TB-Profiler result

Run: ERR2229386
Summary

Run ID: ERR2229386

Sample name:

Date: 18-08-2022 10:21:50

Number of reads: 446860

Percentage reads mapped: 98.86

Strain: lineage4.8

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.98
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fabG1 1673380 c.-60C>G upstream_gene_variant 0.46
alr 3841326 p.Pro32His missense_variant 0.2
alr 3841589 c.-170delG upstream_gene_variant 0.18
alr 3841612 c.-193_-192insC upstream_gene_variant 0.14