Run ID: ERR2229401
Sample name:
Date: 31-03-2023 17:09:20
Number of reads: 1021379
Percentage reads mapped: 99.0
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6930 | p.Ala564Val | missense_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8026 | p.Asp242Val | missense_variant | 0.13 |
mshA | 576225 | p.Val293Glu | missense_variant | 0.17 |
mshA | 576486 | p.Ala380Glu | missense_variant | 0.12 |
rpoC | 766539 | p.Asp1057Gly | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776008 | p.His825Asp | missense_variant | 0.12 |
mmpL5 | 776009 | c.2472A>G | synonymous_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.3 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167745 | p.Thr956Arg | missense_variant | 0.17 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169013 | p.Val534Leu | missense_variant | 0.21 |
PPE35 | 2169029 | c.1584T>C | synonymous_variant | 0.18 |
PPE35 | 2169269 | c.1344A>G | synonymous_variant | 0.15 |
PPE35 | 2169272 | c.1341C>G | synonymous_variant | 0.15 |
PPE35 | 2169278 | c.1335T>C | synonymous_variant | 0.32 |
PPE35 | 2169281 | c.1332T>G | synonymous_variant | 0.38 |
PPE35 | 2169287 | c.1326T>C | synonymous_variant | 0.17 |
PPE35 | 2169902 | c.711G>C | synonymous_variant | 0.11 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.62 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.61 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289711 | c.-470T>C | upstream_gene_variant | 0.25 |
pncA | 2290202 | c.-961C>A | upstream_gene_variant | 0.33 |
pncA | 2290220 | c.-979G>T | upstream_gene_variant | 0.29 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.18 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.18 |
kasA | 2519153 | p.Ile347Val | missense_variant | 0.17 |
pepQ | 2859792 | c.627C>T | synonymous_variant | 0.12 |
thyX | 3067528 | p.Arg140Ser | missense_variant | 0.67 |
thyA | 3074310 | c.162G>T | synonymous_variant | 0.17 |
ald | 3087917 | c.1098C>G | synonymous_variant | 0.13 |
fbiD | 3339266 | p.Ala50Glu | missense_variant | 0.12 |
fbiD | 3339364 | p.Pro83Ala | missense_variant | 0.19 |
Rv3236c | 3613186 | c.-70G>T | upstream_gene_variant | 0.17 |
fbiB | 3642024 | p.Ala164Ser | missense_variant | 0.18 |
fbiB | 3642047 | c.513G>C | synonymous_variant | 0.2 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.17 |
rpoA | 3877683 | c.825G>T | synonymous_variant | 0.12 |
clpC1 | 4040144 | c.561G>C | synonymous_variant | 0.14 |
clpC1 | 4040346 | p.Ala120Gly | missense_variant | 0.12 |
panD | 4044223 | p.Leu20Gln | missense_variant | 0.12 |
embC | 4239950 | p.Arg30Trp | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.38 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.56 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.62 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.62 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.4 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.22 |
ethR | 4327885 | p.Thr113Ser | missense_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |