Run ID: ERR2229471
Sample name:
Date: 31-03-2023 17:14:20
Number of reads: 1765671
Percentage reads mapped: 99.48
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.24 |
mshA | 576144 | p.Arg266His | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777297 | p.Val395Ala | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
embR | 1416975 | p.Ala125Thr | missense_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155340 | p.Asn258Asp | missense_variant | 0.11 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169287 | c.1326T>C | synonymous_variant | 0.11 |
PPE35 | 2169293 | c.1320T>C | synonymous_variant | 0.13 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.21 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.14 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.34 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.35 |
PPE35 | 2170157 | p.Ala152Ser | missense_variant | 0.17 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
clpC1 | 4039829 | p.Leu292Phe | missense_variant | 0.11 |
embC | 4241705 | p.Ser615Thr | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.14 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.31 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.31 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.27 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.29 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.19 |
aftB | 4267942 | p.Gly299Ser | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |