Run ID: ERR2229720
Sample name:
Date: 31-03-2023 17:29:36
Number of reads: 1057933
Percentage reads mapped: 99.17
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
embC | 4240592 | p.Ala244Thr | missense_variant | 0.14 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491315 | p.Gly178Asp | missense_variant | 0.12 |
fgd1 | 491321 | p.Ala180Val | missense_variant | 0.13 |
mshA | 576232 | p.Ile295Met | missense_variant | 0.2 |
ccsA | 620117 | p.Val76Asp | missense_variant | 0.15 |
ccsA | 620212 | p.Gly108Arg | missense_variant | 0.14 |
rpoB | 761389 | p.Asp528Gly | missense_variant | 0.12 |
rpoB | 762273 | p.Ala823Ser | missense_variant | 0.12 |
rpoB | 763041 | p.Leu1079Met | missense_variant | 0.13 |
rpoC | 763220 | c.-150G>C | upstream_gene_variant | 0.14 |
rpoB | 763222 | p.Ile1139Thr | missense_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776080 | p.Ala801Ser | missense_variant | 0.11 |
mmpL5 | 776081 | c.2400G>A | synonymous_variant | 0.11 |
mmpL5 | 776087 | c.2394C>G | synonymous_variant | 0.1 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1303799 | p.Val290Ala | missense_variant | 0.11 |
fbiC | 1304270 | p.Val447Asp | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472761 | n.916A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476292 | n.2635G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476467 | n.2810A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476521 | n.2864C>A | non_coding_transcript_exon_variant | 0.29 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.3 |
fabG1 | 1673751 | p.Lys104Asn | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103240 | c.-198C>G | upstream_gene_variant | 0.12 |
katG | 2154081 | c.2031C>T | synonymous_variant | 0.12 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.24 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.24 |
PPE35 | 2168047 | p.Leu856Val | missense_variant | 0.12 |
PPE35 | 2168051 | c.2562G>C | synonymous_variant | 0.12 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169125 | p.Val496Ile | missense_variant | 0.23 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.59 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.61 |
PPE35 | 2170147 | p.Ser156Ala | missense_variant | 0.14 |
PPE35 | 2170235 | c.378T>C | synonymous_variant | 0.13 |
PPE35 | 2170238 | c.375T>G | synonymous_variant | 0.13 |
PPE35 | 2170244 | c.369G>A | synonymous_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289525 | c.-284G>T | upstream_gene_variant | 0.14 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.15 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.15 |
pepQ | 2859900 | p.Ser173Arg | missense_variant | 0.18 |
thyX | 3068011 | c.-66C>T | upstream_gene_variant | 0.15 |
thyX | 3068015 | c.-70T>G | upstream_gene_variant | 0.15 |
whiB7 | 3568720 | c.-41C>T | upstream_gene_variant | 0.13 |
Rv3236c | 3613308 | c.-192T>A | upstream_gene_variant | 0.11 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.18 |
rpoA | 3877885 | p.Leu208Arg | missense_variant | 0.13 |
rpoA | 3877891 | p.Asp206Val | missense_variant | 0.12 |
rpoA | 3877897 | p.Pro204Gln | missense_variant | 0.13 |
rpoA | 3878545 | c.-38A>G | upstream_gene_variant | 0.5 |
clpC1 | 4039691 | c.1014G>C | synonymous_variant | 0.11 |
clpC1 | 4039829 | p.Leu292Phe | missense_variant | 0.14 |
embC | 4241781 | p.Trp640Leu | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243551 | p.Val107Phe | missense_variant | 0.17 |
embA | 4244451 | p.Pro407Thr | missense_variant | 0.17 |
embA | 4246026 | p.Ala932Ser | missense_variant | 0.12 |
embA | 4246069 | p.Pro946Gln | missense_variant | 0.12 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.62 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.67 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.67 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.29 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.4 |
embB | 4249664 | p.Thr1051Ser | missense_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408215 | c.-13G>A | upstream_gene_variant | 0.15 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |