Run ID: ERR230102
Sample name:
Date: 31-03-2023 17:58:02
Number of reads: 3250024
Percentage reads mapped: 99.65
Strain: lineage4.6.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.3 | Euro-American | T;LAM | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8049 | p.Ser250Ala | missense_variant | 0.97 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620072 | p.Pro61Leu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776987 | c.1493delC | frameshift_variant | 1.0 |
mmpS5 | 778673 | p.Pro78Leu | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474076 | n.419C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475816 | n.2159C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476443 | n.2786G>A | non_coding_transcript_exon_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156437 | c.-326C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242185 | p.Asp775Asn | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268573 | p.Met88Ile | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |