Run ID: ERR2446253
Sample name:
Date: 15-08-2022 11:02:57
Number of reads: 2797962
Percentage reads mapped: 99.96
Strain: lineage4.2.2.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 1.0 |
lineage4.2.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6281 | p.Asp348Tyr | missense_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8688 | p.Ala463Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490873 | p.Gly31Cys | missense_variant | 0.14 |
mshA | 576077 | c.730C>T | synonymous_variant | 1.0 |
rpoB | 761450 | p.Phe548Leu | missense_variant | 0.2 |
rpoB | 763248 | p.Asp1148Tyr | missense_variant | 0.14 |
rpoC | 763274 | c.-96G>T | upstream_gene_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776344 | p.Gly713Trp | missense_variant | 0.18 |
mmpR5 | 779186 | p.Gly66Val | missense_variant | 0.15 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474372 | n.715C>A | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.12 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.12 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.12 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.11 |
inhA | 1674655 | p.Ser152Cys | missense_variant | 0.13 |
rpsA | 1834017 | p.Arg159His | missense_variant | 0.14 |
rpsA | 1834324 | p.Glu261Asp | missense_variant | 0.17 |
tlyA | 1917926 | c.-14G>T | upstream_gene_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168467 | p.Leu716Ile | missense_variant | 0.14 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.31 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.25 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.95 |
kasA | 2518613 | p.Pro167Thr | missense_variant | 0.2 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 0.97 |
thyX | 3067947 | c.-2C>A | upstream_gene_variant | 0.12 |
thyA | 3074356 | p.Ser39* | stop_gained | 0.12 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087851 | c.1032G>T | synonymous_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474950 | p.Ala315Val | missense_variant | 0.17 |
fbiA | 3640772 | p.Arg77Pro | missense_variant | 0.12 |
fbiA | 3640774 | p.Gly78Arg | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245260 | c.2028C>A | synonymous_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407999 | c.204C>T | synonymous_variant | 0.2 |