Run ID: ERR245847
Sample name:
Date: 31-03-2023 18:24:51
Number of reads: 10980871
Percentage reads mapped: 91.11
Strain: lineage4.9.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
lineage4.9.1 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8445 | p.Arg382Gly | missense_variant | 0.26 |
gyrA | 8978 | c.1677C>T | synonymous_variant | 1.0 |
ccsA | 620407 | p.Pro173Ala | missense_variant | 0.2 |
rpoB | 759831 | p.Thr9Pro | missense_variant | 0.27 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.23 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.22 |
rpoC | 767305 | p.Tyr1312* | stop_gained | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 0.99 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474380 | n.723G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.1 |
fabG1 | 1673449 | p.Thr4Pro | missense_variant | 0.36 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169379 | p.Phe412Val | missense_variant | 0.25 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.42 |
PPE35 | 2170156 | p.Ala153Pro | missense_variant | 0.32 |
Rv1979c | 2223145 | p.Arg7Lys | missense_variant | 0.99 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289138 | p.Leu35Arg | missense_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.21 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.67 |
ahpC | 2725954 | c.-239C>T | upstream_gene_variant | 0.25 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.23 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.3 |
Rv2752c | 3067191 | c.-1000G>A | upstream_gene_variant | 0.99 |
thyX | 3067995 | c.-50A>C | upstream_gene_variant | 0.16 |
fbiD | 3339385 | p.Asp90Asn | missense_variant | 1.0 |
Rv3083 | 3449058 | p.Ser185Arg | missense_variant | 0.27 |
fprA | 3474601 | p.Arg199Gly | missense_variant | 0.25 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.3 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.2 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.18 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.16 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.31 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.21 |
embC | 4241056 | c.1194C>G | synonymous_variant | 0.27 |
embC | 4241128 | c.1266G>C | synonymous_variant | 0.2 |
embC | 4241429 | p.Phe523Val | missense_variant | 0.39 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.4 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.17 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.55 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.35 |
aftB | 4268812 | p.Ser9Ala | missense_variant | 0.23 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.23 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.34 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |