Rv0006 - c.1677C>T
Drug resistance types
156 Sensitive
8 RR-TB
15 HR-TB
14 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9.1 | 155 |
| 16 | |
| lineage4.9 | 25 |
| lineage3 | 1 |
| lineage4 | 16 |
| lineage4.1.2.1 | 1 |
| lineage2.2.1 | 5 |
| lineage4.9;lineage4.3.4.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.5 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9.1;lineage2.2.1 | 1 |
| lineage2.2 | 1 |
| lineage4.2.2 | 1 |
| lineage4.9.1;lineage4.3.4.2;lineage4.3.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.1 | 1 |
| lineage4.9;lineage3.1 | 1 |
| lineage4.3.4 | 1 |
| lineage3.1.1 | 1 |
| lineage5.1.4 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 234 |
Geographic prevalence
Country level data for this variant is available for 79 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2515585 | Pre-XDR-TB | lineage4.9.1 | za | ERR1035138 | MDR-TB | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2516695 | MDR-TB | lineage4.9.1 | nl | ERR2514552 | Sensitive | lineage3 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2515120 | Sensitive | lineage4.9.1 | za | ERR2515967 | Sensitive | lineage4.9.1 | za | ERR2516030 | Sensitive | lineage4.9.1 | za | SRR6044819 | Sensitive | lineage4.9 | None | ERR2660423 | Sensitive | lineage4.9.1 | None | ERR2660471 | Sensitive | lineage4.9.1 | None | ERR4821577 | Sensitive | lineage4.9.1 | gb | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR2515166 | MDR-TB | lineage4.9.1 | za | ERR2515225 | MDR-TB | lineage4.9.1 | za | ERR2517475 | Other | lineage4 | None | ERR4822041 | Sensitive | lineage4.9.1 | gb | SRR6153116 | Other | lineage4.9.1 | ca | SRR6046245 | Other | lineage4.9 | None | SRR6896332 | Sensitive | lineage4.9.1 | None | ERR4831638 | Sensitive | None | ERR4831719 | MDR-TB | lineage2.2.1 | None | SRR6982415 | HR-TB | lineage4.9.1 | None | SRR6982416 | Sensitive | lineage4.9.1 | None | SRR6896329 | Sensitive | lineage4.9.1 | None | SRR6982488 | Sensitive | lineage4.9.1 | None | SRR6789633 | Other | lineage4.9.1 | None | SRR6789618 | Sensitive | lineage4.9.1 | None | SRR6789627 | Sensitive | lineage4.9.1 | None | SRR6789632 | Sensitive | lineage4.9.1 | None | SRR6896538 | Sensitive | lineage4.9.1 | None | SRR6789636 | Sensitive | lineage4.9.1 | None | SRR6896559 | Sensitive | lineage4.9.1 | None | SRR6896547 | Sensitive | lineage4.9.1 | None | SRR6982527 | Sensitive | lineage4.9.1 | None | SRR6896589 | Sensitive | lineage4.9.1 | None | SRR6982291 | Sensitive | lineage4.9.1 | None | SRR6855838 | Sensitive | lineage4.9.1 | None | SRR6982053 | Sensitive | lineage4.9;lineage4.3.4.1 | None | ERR502943 | HR-TB | None | SRR6982040 | Sensitive | lineage4.9.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6982529 | MDR-TB | lineage4.9.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6982550 | Sensitive | lineage4.9.1 | None | ERR323076 | Sensitive | lineage4.9.1 | mw | ERR036191 | Sensitive | lineage4.9.1 | None | ERR037507 | Sensitive | lineage4.9.1 | mw | ERR037504 | Other | lineage4.9.1 | None | ERR037509 | Sensitive | lineage4.9.1 | mw | ERR036219 | Sensitive | lineage4.9.1 | mw | ERR037468 | Sensitive | lineage4.9.1 | mw | ERR1023437 | Sensitive | lineage4.9.1 | None | ERR037517 | Sensitive | lineage4.9.1 | mw | ERR037526 | Sensitive | lineage4.9.1 | mw | ERR1034652 | Other | None | ERR1023451 | Sensitive | lineage4.9.1 | None | ERR1023527 | RR-TB | lineage4 | None | ERR11044587 | Other | lineage4.9.1 | None | ERR1034946 | Sensitive | lineage4.9.1 | za | ERR1063842 | HR-TB | lineage4.9.1 | None | ERR126610 | Sensitive | lineage4.9.1 | mw | ERR126611 | Sensitive | lineage4.9.1 | None | ERR126635 | Sensitive | lineage4.9.1 | mw | ERR400336 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4195635 | Sensitive | lineage4.9.1 | None | ERR400345 | Other | lineage4 | None | ERR4010975 | Sensitive | lineage4.9.1 | None | ERR4798204 | RR-TB | lineage4.9.1 | in | ERR4796929 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4809012 | RR-TB | lineage4.9.1 | za | ERR4809133 | Sensitive | lineage4.9.1 | za | ERR4811031 | Sensitive | lineage4.5 | None | ERR4809160 | Sensitive | lineage4.9.1 | za | ERR4812155 | Sensitive | None | ERR4811030 | Sensitive | None | ERR736840 | Sensitive | lineage4.9.1 | None | ERR5918059 | Sensitive | lineage4.9.1 | za | ERR5908174 | Sensitive | lineage4.9.1 | None | ERR7737766 | RR-TB | lineage4.9.1 | None | ERR736839 | Other | None | ERR7801290 | Sensitive | lineage4.9.1 | None | ERR7737795 | MDR-TB | lineage4.9.1 | None | ERR779669 | Sensitive | lineage4.9.1 | None | ERR7801262 | Sensitive | lineage4.9.1 | None | ERR7801295 | Sensitive | lineage4.9.1 | None | ERR7801258 | Sensitive | lineage4.9.1 | None | ERR7801300 | HR-TB | lineage4.9.1 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR8975672 | RR-TB | lineage4.9.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8975415 | Sensitive | lineage4.9.1 | None | ERR8975658 | RR-TB | lineage4.9.1 | None | ERR7821203 | Other | lineage4.9.1 | None | ERR8975544 | Sensitive | lineage4.9.1 | None | ERR9119108 | Sensitive | lineage4.9.1 | None | ERR9121768 | Sensitive | lineage4.9.1 | None | ERR9119906 | MDR-TB | lineage4.9.1;lineage2.2.1 | None | SRR10869321 | Sensitive | lineage4.9.1 | None | ERR9993001 | Other | lineage4.9.1 | None | SRR1013530 | HR-TB | lineage4.9 | None | ERR9993153 | Other | lineage4.9.1 | None | SRR10869055 | Sensitive | lineage4.9.1 | None | SRR10869266 | Sensitive | lineage4.9.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR1175508 | Other | lineage4.9 | None | ERR11067648 | Sensitive | lineage4.9.1 | None | SRR15722998 | Pre-XDR-TB | lineage4.2.2 | None | SRR16156244 | Sensitive | lineage4.9.1 | None | SRR16156264 | Sensitive | lineage4.9.1 | None | SRR18213904 | Sensitive | lineage4.9.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19428606 | Sensitive | lineage4.9.1;lineage4.3.4.2;lineage4.3.3 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2100439 | Sensitive | lineage4.9.1 | None | SRR2100547 | Sensitive | lineage4.9.1 | None | SRR2101414 | Sensitive | lineage4.9.1 | None | SRR2101449 | Sensitive | lineage4.9.1 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | SRR2101553 | Sensitive | lineage4.9.1 | None | SRR2101609 | Sensitive | lineage4.9.1 | None | SRR24035900 | Sensitive | lineage2.2.1.2 | None | ERR10112871 | RR-TB | lineage4.9.1 | None | ERR176756 | Sensitive | lineage4.9.1 | None | ERR176762 | Sensitive | lineage4.9.1 | mw | ERR11069101 | MDR-TB | lineage4.9.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | ERR176761 | Sensitive | lineage4.9.1 | mw | ERR161042 | Sensitive | lineage4.9.1 | mw | SRR3675477 | Other | lineage4.9 | None | ERR176804 | Sensitive | lineage4.9.1 | mw | ERR176808 | Sensitive | lineage4.9.1 | mw | SRR3675472 | Sensitive | lineage4.9 | None | ERR190340 | HR-TB | lineage4.9;lineage3.1 | None | ERR176811 | Sensitive | lineage4.9.1 | None | ERR2200005 | Sensitive | lineage4.9.1 | sz | ERR176824 | Sensitive | lineage4.9.1 | mw | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161052 | Sensitive | lineage4.9.1 | mw | ERR190392 | Sensitive | lineage4.9.1 | mw | ERR190380 | Sensitive | lineage4.9.1 | mw | ERR181967 | Sensitive | lineage4.9.1 | mw | ERR190396 | Sensitive | lineage4.9.1 | mw | ERR161171 | Sensitive | lineage4.9.1 | mw | ERR161196 | Sensitive | lineage4.9.1 | mw | ERR181744 | HR-TB | None | SRR3675229 | Other | lineage4 | None | ERR1750904 | Sensitive | lineage4.9.1 | za | SRR3675247 | Other | lineage4.9 | None | ERR176538 | Sensitive | lineage4.9.1 | mw | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR164007 | Sensitive | lineage4.9.1 | mw | ERR3275450 | Other | lineage4 | None | ERR1750894 | Sensitive | lineage4.9.1 | zw | ERR1750893 | Sensitive | lineage4.9.1 | zw | ERR1750903 | Sensitive | lineage4.9.1 | za | SRR3675249 | Sensitive | lineage4.9 | None | ERR176529 | Sensitive | lineage4.9.1 | mw | ERR190381 | Sensitive | lineage4.9.1 | mw | SRR3675279 | Other | None | ERR176598 | Sensitive | lineage4.9.1 | mw | ERR176594 | Sensitive | lineage4.9.1 | mw | ERR176585 | Sensitive | lineage4.9.1 | mw | ERR176608 | Other | lineage4.9.1 | mw | SRR3675318 | Other | lineage4.9 | None | ERR176625 | Sensitive | lineage4.9.1 | mw | ERR176636 | Sensitive | lineage4.9.1 | mw | ERR2200017 | Sensitive | lineage4.9.1 | sz | ERR176733 | Sensitive | lineage4.9.1 | mw | ERR176751 | HR-TB | None | SRR3675387 | Sensitive | None | ERR181901 | Sensitive | lineage4.9.1 | mw | SRR3675455 | Sensitive | lineage4 | None | ERR212076 | Sensitive | lineage4.9.1 | mw | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR2513363 | Sensitive | lineage4.9.1 | gb | ERR212082 | Sensitive | lineage4.9.1 | None | ERR212123 | Other | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | None | ERR212158 | HR-TB | lineage4.9.1 | mw | ERR216928 | Other | lineage4.9.1 | None | ERR216975 | Sensitive | lineage4.9.1 | None | ERR2245360 | Sensitive | lineage3.1.1 | None | ERR212121 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR216974 | Sensitive | lineage4.9.1 | None | ERR221527 | Sensitive | lineage4.9.1 | mw | ERR221547 | Sensitive | lineage4.9.1 | mw | ERR221595 | Other | lineage4.9.1 | mw | ERR245650 | Sensitive | lineage4.9.1 | mw | ERR228190 | Sensitive | lineage4.9.1 | None | ERR2512392 | Sensitive | lineage4.9.1 | gb | ERR245714 | Sensitive | lineage4.9.1 | mw | ERR245653 | Sensitive | lineage4.9.1 | mw | ERR245658 | Sensitive | lineage4.9.1 | mw | ERR245659 | Other | lineage4.9.1 | mw | ERR245685 | Sensitive | lineage4.9.1 | mw | ERR245758 | Other | lineage4.9.1 | None | ERR245719 | Sensitive | lineage4.9.1 | mw | ERR245731 | Sensitive | lineage4.9.1 | mw | ERR245712 | Sensitive | lineage4.9.1 | mw | ERR2515520 | MDR-TB | lineage4.9.1 | za | ERR2513283 | Other | lineage5.1.4 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2515338 | Sensitive | lineage4.9.1 | za | ERR245772 | Sensitive | lineage4.9.1 | None | ERR245810 | Sensitive | lineage4.9.1 | None | ERR245835 | Other | lineage4.9.1 | mw | ERR245845 | Sensitive | lineage4.9.1 | mw | ERR245847 | Sensitive | lineage4.9.1 | mw | ERR2515329 | RR-TB | lineage4.9.1 | za | SRR5341396 | Other | lineage4 | None | ERR2515528 | Pre-XDR-TB | lineage4.9.1 | za |
|---|
