Rv0006 - c.1677C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
232 Sensitive
15 RR-TB
10 HR-TB
30 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 1 |
| lineage4.9.1 | 249 |
| lineage4.9 | 33 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.4.1.1;lineage4.9.1 | 3 |
| lineage4 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.2.2 | 1 |
| lineage2.2.1;lineage4.9.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| lineage4.3;lineage4.9.1 | 1 |
| lineage1.2.2.1;lineage4.9.1 | 1 |
| 1 | |
| lineage3;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.3.3;lineage4.3.4.2;lineage4.9.1 | 1 |
| lineage3.1;lineage4.9.1 | 1 |
| lineage4.1.1.3;lineage4.9.1 | 1 |
| lineage4.3.4 | 1 |
| lineage1.1.2;lineage4.9.1 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 321 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR21732393 | Sensitive | lineage3 | None | ERR8975544 | Sensitive | lineage4.9.1 | None | SRR2101414 | Sensitive | lineage4.9.1 | None | SRR2101449 | Sensitive | lineage4.9.1 | None | ERR176762 | Sensitive | lineage4.9.1 | mw | ERR11465409 | Sensitive | lineage4.9.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6789618 | Sensitive | lineage4.9.1 | None | ERR11465662 | Sensitive | lineage4.9.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR11466504 | Sensitive | lineage4.4.1.1;lineage4.9.1 | None | SRR2101553 | Sensitive | lineage4.9.1 | None | ERR3275450 | Other | lineage4 | None | ERR13286188 | RR-TB | lineage4.9.1 | None | ERR13289275 | RR-TB | lineage4.9.1 | None | ERR9993001 | Other | lineage4.9.1 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR11466078 | Sensitive | lineage4.9.1 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR11466061 | Sensitive | lineage4.9.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR6982291 | Sensitive | lineage4.9.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR126611 | Sensitive | lineage4.9.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176756 | Sensitive | lineage4.9.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR176811 | Sensitive | lineage4.9.1 | None | ERR11466092 | Sensitive | lineage4.9.1 | None | ERR245810 | Sensitive | lineage4.9.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR13093957 | Sensitive | lineage4.9.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR6896332 | Sensitive | lineage4.9.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6789636 | Sensitive | lineage4.9.1 | None | ERR245847 | Sensitive | lineage4.9.1 | mw | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465663 | Sensitive | lineage4.9.1 | None | ERR4195635 | Sensitive | lineage4.9.1 | None | SRR16156244 | Sensitive | lineage4.9.1 | None | SRR26331631 | RR-TB | lineage4.9.1 | None | ERR245731 | Sensitive | lineage4.9.1 | mw | ERR11488328 | MDR-TB | lineage4.9.1 | None | ERR1750893 | Sensitive | lineage4.9.1 | zw | SRR29093767 | MDR-TB | lineage4.9.1 | None | ERR2515338 | Sensitive | lineage4.9.1 | za | SRR10869321 | Sensitive | lineage4.9.1 | None | ERR11466054 | Sensitive | lineage4.9.1 | None | ERR13267763 | Sensitive | lineage4.9.1 | None | ERR176808 | Sensitive | lineage4.9.1 | mw | ERR2515120 | Sensitive | lineage4.9.1 | za | ERR11488432 | MDR-TB | lineage4.9.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR7801262 | Sensitive | lineage4.9.1 | None | ERR2660471 | Sensitive | lineage4.9.1 | None | SRR6982040 | Sensitive | lineage4.9.1 | None | ERR176824 | Sensitive | lineage4.9.1 | mw | SRR29055918 | MDR-TB | lineage4.9.1 | None | ERR245653 | Sensitive | lineage4.9.1 | mw | ERR11488694 | MDR-TB | lineage4.9.1 | None | ERR176608 | Sensitive | lineage4.9.1 | mw | ERR176761 | Sensitive | lineage4.9.1 | mw | ERR176636 | Sensitive | lineage4.9.1 | mw | ERR190381 | Sensitive | lineage4.9.1 | mw | ERR11466079 | Sensitive | lineage4.9.1 | None | ERR037526 | Sensitive | lineage4.9.1 | mw | SRR27450045 | Sensitive | lineage4.9.1 | None | SRR6982416 | Sensitive | lineage4.9.1 | None | SRR2100439 | Sensitive | lineage4.9.1 | None | ERR11252514 | Sensitive | lineage4.9.1 | None | ERR9993153 | Other | lineage4.9.1 | None | ERR323076 | Sensitive | lineage4.9.1 | mw | SRR27450232 | Sensitive | lineage4.9.1 | None | ERR181967 | Sensitive | lineage4.9.1 | mw | ERR11465322 | Sensitive | lineage4.9.1 | None | ERR7821203 | Other | lineage4.9.1 | None | ERR245845 | Sensitive | lineage4.9.1 | mw | ERR11252585 | Sensitive | lineage4.9.1 | None | SRR6896538 | Sensitive | lineage4.9.1 | None | ERR11465131 | Sensitive | lineage4.9.1 | None | SRR29093978 | Sensitive | lineage4.9.1 | None | ERR10112871 | RR-TB | lineage4.9.1 | None | SRR16156264 | Sensitive | lineage4.9.1 | None | ERR11465393 | Sensitive | lineage4.9.1 | None | ERR11252484 | Sensitive | lineage4.9.1 | None | SRR29093647 | Sensitive | lineage4.9.1 | None | ERR9119108 | Sensitive | lineage4.9.1 | None | ERR176529 | Sensitive | lineage4.9.1 | mw | ERR161196 | Sensitive | lineage4.9.1 | mw | ERR2513363 | Sensitive | lineage4.9.1 | gb | ERR037517 | Sensitive | lineage4.9.1 | mw | SRR29093461 | Sensitive | lineage4.9.1 | None | SRR10869266 | Sensitive | lineage4.9.1 | None | ERR7801300 | HR-TB | lineage4.9.1 | None | ERR190396 | Sensitive | lineage4.9.1 | mw | SRR2100547 | Sensitive | lineage4.9.1 | None | ERR212158 | HR-TB | lineage4.9.1 | mw | ERR11465547 | Sensitive | lineage4.9.1 | None | SRR29049029 | MDR-TB | lineage4.9.1 | None | ERR11067648 | Sensitive | lineage4.9.1 | None | SRR21732620 | Sensitive | lineage4.9.1 | None | ERR11465989 | Sensitive | lineage4.9.1 | None | ERR245719 | Sensitive | lineage4.9.1 | mw | ERR037509 | Sensitive | lineage4.9.1 | mw | ERR11465042 | Sensitive | lineage4.9.1 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | ERR11488480 | HR-TB | lineage4.9.1 | None | ERR2517475 | Other | lineage4 | None | ERR2515967 | Sensitive | lineage4.9.1 | za | ERR2515585 | Pre-XDR-TB | lineage4.9.1 | za | ERR2515329 | RR-TB | lineage4.9.1 | za | ERR2515528 | MDR-TB | lineage4.9.1 | za | ERR2200005 | Sensitive | lineage4.9.1 | sz | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR11465065 | Sensitive | lineage4.9.1 | None | ERR216975 | Sensitive | lineage4.9.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR11465410 | Sensitive | lineage4.9.1 | None | SRR6982527 | Sensitive | lineage4.9.1 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR11466006 | Sensitive | lineage4.9.1 | None | ERR8975672 | RR-TB | lineage4.9.1 | None | SRR15722998 | Pre-XDR-TB | lineage4.2.2 | None | SRR6789633 | Sensitive | lineage4.9.1 | None | SRR3675522 | Other | lineage4.9 | None | ERR9119906 | MDR-TB | lineage2.2.1;lineage4.9.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR212082 | Sensitive | lineage4.9.1 | None | ERR036191 | Sensitive | lineage4.9.1 | None | ERR13093956 | Sensitive | lineage4.9.1 | None | SRR6982415 | Other | lineage4.9.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR6896547 | Sensitive | lineage4.9.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR6982053 | Sensitive | lineage4.3;lineage4.9.1 | None | ERR13582774 | Sensitive | lineage1.2.2.1;lineage4.9.1 | None | ERR176751 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR11466038 | Sensitive | lineage4.9.1 | None | ERR1034946 | Sensitive | lineage4.9.1 | za | ERR176598 | Sensitive | lineage4.9.1 | mw | ERR4798204 | RR-TB | lineage4.9.1 | in | ERR2515225 | MDR-TB | lineage4.9.1 | za | ERR11069101 | MDR-TB | lineage4.9.1 | None | ERR245712 | Sensitive | lineage4.9.1 | mw | ERR11466117 | Sensitive | lineage4.9.1 | None | SRR29056085 | Sensitive | lineage4.9.1 | None | ERR11466012 | Sensitive | lineage4.9.1 | None | ERR11466459 | Sensitive | lineage4.9.1 | None | SRR29093639 | MDR-TB | lineage4.9.1 | None | ERR11466409 | Sensitive | lineage4.9.1 | None | SRR29096730 | Sensitive | lineage4.9.1 | None | SRR29093417 | Sensitive | lineage4.9.1 | None | ERR7801258 | Sensitive | lineage4.9.1 | None | SRR6982529 | MDR-TB | lineage4.9.1 | None | ERR7737795 | MDR-TB | lineage4.9.1 | None | ERR1063842 | HR-TB | lineage4.9.1 | None | ERR11465315 | Sensitive | lineage4.9.1 | None | ERR1750894 | Sensitive | lineage4.9.1 | zw | ERR11466263 | RR-TB | lineage4.9.1 | None | ERR176625 | Sensitive | lineage4.9.1 | mw | ERR245650 | Sensitive | lineage4.9.1 | mw | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR245658 | Sensitive | lineage4.9.1 | mw | ERR2660423 | Sensitive | lineage4.9.1 | None | ERR161042 | Sensitive | lineage4.9.1 | mw | ERR228190 | Sensitive | lineage4.9.1 | None | ERR779669 | Sensitive | lineage4.9.1 | None | ERR190392 | Sensitive | lineage4.9.1 | mw | ERR11466179 | Sensitive | lineage4.9.1 | None | ERR176733 | Sensitive | lineage4.9.1 | mw | ERR245685 | Sensitive | lineage4.9.1 | mw | SRR29049028 | MDR-TB | lineage4.9.1 | None | ERR126635 | Sensitive | lineage4.9.1 | mw | ERR7801295 | Sensitive | lineage4.9.1 | None | ERR4821577 | Sensitive | lineage4.9.1 | gb | SRR29055580 | Sensitive | lineage4.9.1 | None | SRR6896589 | Sensitive | lineage4.9.1 | None | ERR1750903 | Sensitive | lineage4.9.1 | za | SRR2101609 | Sensitive | lineage4.9.1 | None | ERR161052 | Sensitive | lineage4.9.1 | mw | ERR4010975 | Sensitive | lineage4.9.1 | None | SRR29093631 | MDR-TB | lineage4.9.1 | None | ERR161171 | Sensitive | lineage4.9.1 | mw | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR11811432 | Sensitive | lineage4.9.1 | None | SRR29094052 | MDR-TB | lineage4.9.1 | None | SRR29093566 | Sensitive | lineage4.9.1 | None | ERR221547 | Sensitive | lineage4.9.1 | mw | ERR11465761 | Sensitive | lineage4.9.1 | None | ERR181901 | Sensitive | lineage4.9.1 | mw | ERR11465183 | Sensitive | lineage4.9.1 | None | ERR2516030 | Sensitive | lineage4.9.1 | za | ERR11466157 | Sensitive | lineage4.9.1 | None | ERR11488506 | MDR-TB | lineage4.9.1 | None | ERR7801290 | Sensitive | lineage4.9.1 | None | ERR11465952 | Sensitive | lineage4.9.1 | None | ERR037468 | Sensitive | lineage4.9.1 | mw | SRR6982488 | Sensitive | lineage4.9.1 | None | ERR11465064 | Sensitive | lineage4.9.1 | None | ERR221595 | Other | lineage4.9.1 | mw | ERR4822041 | Sensitive | lineage4.9.1 | gb | ERR2516695 | MDR-TB | lineage4.9.1 | nl | ERR1750904 | Sensitive | lineage4.9.1 | za | ERR190380 | Sensitive | lineage4.9.1 | mw | ERR11811474 | Sensitive | lineage4.9.1 | None | SRR10869055 | Sensitive | lineage4.9.1 | None | ERR11775060 | MDR-TB | lineage4.9.1 | None | ERR11488481 | MDR-TB | lineage4.9.1 | None | ERR164007 | Sensitive | lineage4.9.1 | mw | ERR9121768 | Sensitive | lineage4.9.1 | None | ERR11466556 | Sensitive | lineage4.9.1 | None | ERR11775076 | RR-TB | lineage4.9.1 | None | ERR245714 | Sensitive | lineage4.9.1 | mw | ERR1023437 | Sensitive | lineage4.9.1 | None | ERR5908174 | Sensitive | lineage4.9.1 | None | SRR6153116 | Other | lineage4.9.1 | ca | SRR29096555 | MDR-TB | lineage4.9.1 | None | ERR245835 | Sensitive | lineage4.9.1 | mw | ERR11466262 | Sensitive | lineage4.9.1 | None | ERR4809133 | Sensitive | lineage4.9.1 | za | ERR216974 | Sensitive | lineage4.9.1 | None | ERR176804 | Sensitive | lineage4.9.1 | mw | SRR6896559 | Sensitive | lineage4.9.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR11466505 | Sensitive | lineage4.4.1.1;lineage4.9.1 | None | ERR13288953 | Other | lineage4.9.1 | None | ERR11465335 | RR-TB | lineage4.4.1.1;lineage4.9.1 | None | ERR13288999 | MDR-TB | lineage4.9.1 | None | ERR2515166 | MDR-TB | lineage4.9.1 | za | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR8975658 | RR-TB | lineage4.9.1 | None | ERR8975415 | Sensitive | lineage4.9.1 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR6789632 | Sensitive | lineage4.9.1 | None | ERR11488668 | Pre-XDR-TB | lineage4.9.1 | None | ERR11466039 | Sensitive | lineage4.9.1 | None | SRR29055943 | MDR-TB | lineage4.9.1 | None | SRR19428606 | Sensitive | lineage4.3.3;lineage4.3.4.2;lineage4.9.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR11466005 | Sensitive | lineage4.9.1 | None | SRR6789627 | Sensitive | lineage4.9.1 | None | ERR190340 | Sensitive | lineage3.1;lineage4.9.1 | None | ERR212123 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245772 | Sensitive | lineage4.9.1 | None | ERR11466164 | Sensitive | lineage4.1.1.3;lineage4.9.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6855838 | Sensitive | lineage4.9.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR6982550 | Sensitive | lineage4.9.1 | None | SRR29096142 | Sensitive | lineage1.1.2;lineage4.9.1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR11466555 | Sensitive | lineage4.9.1 | None | ERR2446382 | Other | lineage4 | None | SRR6896329 | Sensitive | lineage4.9.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR11466264 | RR-TB | lineage4.9.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR216928 | Other | lineage4.9.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR7737766 | RR-TB | lineage4.9.1 | None | ERR11466482 | Sensitive | lineage4.9.1 | None | ERR11252656 | Sensitive | lineage4.9.1 | None | SRR29055847 | Sensitive | lineage4.9.1 | None | ERR2515520 | MDR-TB | lineage4.9.1 | za | ERR11044587 | Other | lineage4.9.1 | None | ERR2200017 | Sensitive | lineage4.9.1 | sz | ERR11465337 | Sensitive | lineage4.9.1 | None | SRR29096237 | Sensitive | lineage4.9.1 | None | ERR176538 | Sensitive | lineage4.9.1 | mw | ERR11466338 | Sensitive | lineage4.9.1 | None | ERR11465884 | Sensitive | lineage4.9.1 | None | ERR1023451 | Sensitive | lineage4.9.1 | None | ERR11252688 | Sensitive | lineage4.9.1 | None | ERR212076 | Sensitive | lineage4.9.1 | mw | ERR037507 | Sensitive | lineage4.9.1 | mw | ERR126610 | Sensitive | lineage4.9.1 | mw | ERR11488656 | Pre-XDR-TB | lineage4.9.1 | None | ERR036219 | Sensitive | lineage4.9.1 | mw | ERR11488593 | MDR-TB | lineage4.9.1 | None | ERR13284561 | MDR-TB | lineage4.9.1 | None | ERR11252446 | Sensitive | lineage4.9.1 | None | ERR176594 | Sensitive | lineage4.9.1 | mw | ERR2512392 | Sensitive | lineage4.9.1 | gb | ERR221527 | Sensitive | lineage4.9.1 | mw | SRR18213904 | Sensitive | lineage4.9.1 | None | ERR176585 | Sensitive | lineage4.9.1 | mw | ERR11465960 | Sensitive | lineage4.9.1 | None | ERR11465669 | Sensitive | lineage4.9.1 | None | SRR29093393 | Sensitive | lineage4.9.1 | None | ERR736840 | Sensitive | lineage4.9.1 | None | ERR4809012 | RR-TB | lineage4.9.1 | za | ERR4809160 | Sensitive | lineage4.9.1 | za | ERR5918059 | Sensitive | lineage4.9.1 | za | ERR4797313 | Sensitive | lineage2.2.1 | None |
|---|
