Run ID: ERR176762
Sample name:
Date: 19-10-2023 18:20:28
Number of reads: 1863958
Percentage reads mapped: 91.7
Strain: lineage4.9.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
lineage4.9.1 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8978 | c.1677C>T | synonymous_variant | 1.0 |
rpoC | 764576 | p.Ser403Ala | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289138 | p.Leu35Arg | missense_variant | 1.0 |
fbiD | 3339385 | p.Asp90Asn | missense_variant | 1.0 |
embA | 4243979 | c.747C>T | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |