Run ID: SRR6982488
Sample name:
Date: 04-04-2023 18:38:58
Number of reads: 690944
Percentage reads mapped: 99.68
Strain: lineage4.9.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
lineage4.9.1 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8978 | c.1677C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776919 | p.Arg521Lys | missense_variant | 0.15 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781609 | p.Ser17Asn | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289138 | p.Leu35Arg | missense_variant | 1.0 |
Rv2752c | 3067003 | c.-812T>G | upstream_gene_variant | 0.12 |
fbiD | 3339385 | p.Asp90Asn | missense_variant | 1.0 |
Rv3236c | 3612223 | c.894C>T | synonymous_variant | 0.13 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.15 |
embC | 4240559 | p.Ala233Thr | missense_variant | 0.12 |
embC | 4242489 | p.Gln876Pro | missense_variant | 0.11 |
embB | 4246472 | c.-42T>C | upstream_gene_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |