TB-Profiler result

Run: ERR7821126
Summary

Run ID: ERR7821126

Sample name:

Date: 02-04-2023 06:21:13

Number of reads: 1582829

Percentage reads mapped: 88.51

Strain: lineage1.1.3.2

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage1 Indo-Oceanic EAI RD239 0.97
lineage1.1 Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239 1.0
lineage1.1.3 Indo-Oceanic EAI6 RD239 1.0
lineage1.1.3.2 Indo-Oceanic NA RD239 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6112 p.Met291Ile missense_variant 1.0
gyrA 7147 c.-155G>C upstream_gene_variant 0.13
gyrA 7165 c.-137C>G upstream_gene_variant 0.17
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8188 p.Leu296Pro missense_variant 1.0
gyrA 8452 p.Ala384Val missense_variant 0.95
gyrA 8672 c.1371A>G synonymous_variant 0.14
gyrA 8967 p.Ala556Arg missense_variant 0.17
gyrA 8978 c.1677C>T synonymous_variant 0.19
gyrA 8987 c.1686C>G synonymous_variant 0.18
gyrA 8990 c.1689C>G synonymous_variant 0.2
gyrA 8996 c.1695T>C synonymous_variant 0.2
gyrA 8998 p.Leu566Trp missense_variant 0.2
gyrA 9017 c.1716C>G synonymous_variant 0.18
gyrA 9023 c.1722A>C synonymous_variant 0.19
gyrA 9029 c.1728T>C synonymous_variant 0.22
gyrA 9050 c.1749C>T synonymous_variant 0.17
gyrA 9051 c.1750_1752delTTGinsCTT synonymous_variant 0.15
gyrA 9056 c.1755C>G synonymous_variant 0.16
gyrA 9065 c.1764C>G synonymous_variant 0.15
gyrA 9074 c.1773G>T synonymous_variant 0.16
gyrA 9080 c.1779G>T synonymous_variant 0.15
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9267 p.Asn656Gly missense_variant 0.16
gyrA 9293 c.1992G>C synonymous_variant 0.17
gyrA 9296 c.1995T>C synonymous_variant 0.18
gyrA 9299 c.1998G>C synonymous_variant 0.16
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.18
ccsA 619695 c.-196G>A upstream_gene_variant 0.95
rpoB 760547 c.741G>T synonymous_variant 0.16
rpoB 760973 c.1167G>C synonymous_variant 0.15
rpoB 760982 c.1176G>C synonymous_variant 0.15
rpoB 761003 c.1197C>G synonymous_variant 0.17
rpoB 761006 c.1200C>G synonymous_variant 0.16
rpoB 761015 c.1209G>C synonymous_variant 0.18
rpoB 761021 c.1215G>C synonymous_variant 0.19
rpoB 761027 c.1221A>C synonymous_variant 0.22
rpoB 761036 c.1230G>C synonymous_variant 0.21
rpoB 761057 c.1251G>C synonymous_variant 0.21
rpoB 761097 p.Ser431Cys missense_variant 0.14
rpoB 761102 c.1296A>G synonymous_variant 0.16
rpoB 761133 c.1327T>C synonymous_variant 0.16
rpoB 761147 c.1341C>T synonymous_variant 0.16
rpoB 761150 c.1344A>T synonymous_variant 0.16
rpoB 761165 c.1359G>C synonymous_variant 0.15
rpoB 761171 c.1365C>T synonymous_variant 0.15
rpoB 761180 c.1374A>C synonymous_variant 0.16
rpoB 761189 c.1383T>C synonymous_variant 0.14
rpoB 761195 c.1389G>C synonymous_variant 0.15
rpoB 761207 c.1401C>T synonymous_variant 0.15
rpoB 761510 c.1704T>C synonymous_variant 0.14
rpoB 761531 c.1725C>G synonymous_variant 0.2
rpoB 761537 c.1731C>G synonymous_variant 0.21
rpoB 761561 c.1755C>G synonymous_variant 0.24
rpoB 761564 c.1758G>C synonymous_variant 0.27
rpoB 761570 c.1764T>C synonymous_variant 0.28
rpoB 761573 c.1767C>G synonymous_variant 0.26
rpoB 761579 c.1773G>C synonymous_variant 0.27
rpoB 761606 c.1800C>G synonymous_variant 0.22
rpoB 761612 c.1806G>T synonymous_variant 0.19
rpoB 761615 c.1809A>C synonymous_variant 0.2
rpoB 761636 c.1830G>T synonymous_variant 0.23
rpoB 761645 c.1839C>G synonymous_variant 0.2
rpoB 761648 c.1842T>C synonymous_variant 0.19
rpoB 761657 c.1851C>G synonymous_variant 0.18
rpoB 761669 c.1863C>T synonymous_variant 0.16
rpoB 761675 c.1869G>T synonymous_variant 0.19
rpoB 761870 p.Asp688Glu missense_variant 0.16
rpoB 761873 c.2067A>G synonymous_variant 0.17
rpoB 762062 c.2256T>C synonymous_variant 0.16
rpoB 762065 c.2259T>C synonymous_variant 0.16
rpoB 762083 c.2277T>C synonymous_variant 0.16
rpoB 762086 c.2280G>C synonymous_variant 0.18
rpoB 762101 c.2295C>G synonymous_variant 0.16
rpoB 762114 p.Ile770Val missense_variant 0.18
rpoB 762122 c.2316C>T synonymous_variant 0.2
rpoB 762129 c.2323_2325delCTCinsTTG synonymous_variant 0.17
rpoB 762143 c.2337T>C synonymous_variant 0.2
rpoB 762149 c.2343G>C synonymous_variant 0.21
rpoB 762185 c.2379G>C synonymous_variant 0.3
rpoB 762221 c.2415G>A synonymous_variant 0.25
rpoB 762233 c.2427G>C synonymous_variant 0.24
rpoB 762254 c.2448T>C synonymous_variant 0.17
rpoB 762257 c.2451C>G synonymous_variant 0.17
rpoB 762284 c.2478G>T synonymous_variant 0.17
rpoB 762293 c.2487T>C synonymous_variant 0.15
rpoB 762296 c.2490G>C synonymous_variant 0.14
rpoB 762297 c.2491C>T synonymous_variant 0.14
rpoC 763028 c.-342T>C upstream_gene_variant 0.15
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.16
rpoC 763040 c.-330C>G upstream_gene_variant 0.16
rpoC 763070 c.-300T>C upstream_gene_variant 0.13
rpoC 763441 c.72C>T synonymous_variant 0.16
rpoC 763444 c.75T>C synonymous_variant 0.16
rpoC 763456 c.87A>G synonymous_variant 0.2
rpoC 763486 c.117T>G synonymous_variant 0.16
rpoC 763492 c.123G>C synonymous_variant 0.17
rpoC 763528 c.159G>A synonymous_variant 0.16
rpoC 763546 c.177A>G synonymous_variant 0.18
rpoC 763570 c.201G>T synonymous_variant 0.21
rpoC 763573 c.204G>C synonymous_variant 0.2
rpoC 763594 c.225C>T synonymous_variant 0.21
rpoC 763636 c.267T>C synonymous_variant 0.22
rpoC 763660 c.291T>G synonymous_variant 0.21
rpoC 763675 c.306C>G synonymous_variant 0.23
rpoC 763696 c.327T>C synonymous_variant 0.2
rpoC 763702 c.333C>G synonymous_variant 0.2
rpoC 763723 c.354G>C synonymous_variant 0.19
rpoC 763732 c.363C>G synonymous_variant 0.2
rpoC 763884 p.Ala172Val missense_variant 0.9
rpoC 763886 c.517C>A synonymous_variant 0.89
rpoC 764458 c.1089G>C synonymous_variant 0.15
rpoC 764461 c.1092A>G synonymous_variant 0.17
rpoC 764521 c.1152T>C synonymous_variant 0.13
rpoC 764536 c.1167G>C synonymous_variant 0.14
rpoC 764539 c.1170C>G synonymous_variant 0.14
rpoC 764815 c.1446A>G synonymous_variant 0.17
rpoC 764827 c.1458G>C synonymous_variant 0.16
rpoC 765171 p.Pro601Leu missense_variant 1.0
rpoC 765230 p.Ala621Thr missense_variant 0.98
rpoC 765478 c.2109T>C synonymous_variant 0.15
rpoC 765493 c.2124G>C synonymous_variant 0.19
rpoC 765499 c.2130C>G synonymous_variant 0.19
rpoC 765508 c.2139C>G synonymous_variant 0.19
rpoC 765541 c.2172C>G synonymous_variant 0.23
rpoC 765553 c.2184C>T synonymous_variant 0.18
rpoC 765556 c.2187G>C synonymous_variant 0.17
rpoC 765562 c.2193G>C synonymous_variant 0.14
rpoC 765580 c.2211G>C synonymous_variant 0.15
rpoC 765583 c.2214G>C synonymous_variant 0.15
rpoC 765592 c.2223C>T synonymous_variant 0.15
rpoC 765613 p.His748Gln missense_variant 0.16
rpoC 765622 p.Glu751Asp missense_variant 0.13
rpoC 765694 c.2325G>C synonymous_variant 0.16
rpoC 765700 c.2331T>C synonymous_variant 0.18
rpoC 765734 c.2365T>C synonymous_variant 0.26
rpoC 765739 c.2370G>T synonymous_variant 0.24
rpoC 765751 c.2382C>G synonymous_variant 0.21
rpoC 765753 p.Asp795Ala missense_variant 0.21
rpoC 765772 c.2403C>G synonymous_variant 0.18
rpoC 765778 c.2409C>G synonymous_variant 0.19
rpoC 765793 c.2424C>G synonymous_variant 0.15
rpoC 765811 c.2442T>G synonymous_variant 0.16
rpoC 765826 c.2457T>C synonymous_variant 0.15
rpoC 765835 c.2466C>T synonymous_variant 0.16
rpoC 765883 c.2514C>G synonymous_variant 0.16
rpoC 765886 c.2517C>G synonymous_variant 0.16
rpoC 766312 c.2943T>G synonymous_variant 0.13
rpoC 766408 c.3039C>T synonymous_variant 0.13
rpoC 766426 c.3057C>T synonymous_variant 0.14
rpoC 766765 c.3396A>C synonymous_variant 0.18
rpoC 766774 c.3405T>C synonymous_variant 0.22
rpoC 766804 c.3435A>G synonymous_variant 0.22
rpoC 766861 c.3492G>C synonymous_variant 0.18
rpoC 766864 c.3495G>C synonymous_variant 0.19
rpoC 766900 c.3531T>C synonymous_variant 0.15
rpoC 767009 p.Ser1214Arg missense_variant 0.15
rpoC 767014 c.3645G>C synonymous_variant 0.16
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.25
rpoC 767059 c.3690T>G synonymous_variant 0.28
rpoC 767062 c.3693C>A synonymous_variant 0.28
rpoC 767098 c.3729T>C synonymous_variant 0.23
rpoC 767119 c.3750A>G synonymous_variant 0.24
rpoC 767134 c.3765C>A synonymous_variant 0.21
rpoC 767167 c.3798C>G synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776288 c.2193C>G synonymous_variant 1.0
mmpS5 778701 p.Ile69Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781754 c.195G>C synonymous_variant 0.17
rpsL 781760 c.201T>C synonymous_variant 0.15
rpsL 781769 c.210G>A synonymous_variant 0.15
rpsL 781808 c.249C>T synonymous_variant 0.15
rpsL 781817 c.258G>T synonymous_variant 0.15
rpsL 781832 c.273T>C synonymous_variant 0.14
rpsL 781838 c.279G>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.13
rpsL 781871 c.312G>C synonymous_variant 0.14
rplC 800690 c.-119C>T upstream_gene_variant 0.22
rplC 800693 c.-116A>C upstream_gene_variant 0.21
rplC 800703 c.-106T>C upstream_gene_variant 0.18
rplC 800715 c.-94A>C upstream_gene_variant 0.18
rplC 800720 c.-89T>C upstream_gene_variant 0.15
rplC 800723 c.-86C>G upstream_gene_variant 0.16
rplC 800738 c.-71T>C upstream_gene_variant 0.14
rplC 800747 c.-62C>G upstream_gene_variant 0.15
rplC 801166 p.Gly120Ser missense_variant 0.9
fbiC 1303740 c.810C>T synonymous_variant 0.15
fbiC 1303746 c.816T>C synonymous_variant 0.14
fbiC 1303752 c.822A>G synonymous_variant 0.15
fbiC 1303755 c.825T>C synonymous_variant 0.15
fbiC 1303761 c.831T>C synonymous_variant 0.19
fbiC 1303785 c.855G>C synonymous_variant 0.22
fbiC 1303788 c.858T>C synonymous_variant 0.22
fbiC 1303789 p.Ile287Val missense_variant 0.22
fbiC 1303794 c.864A>G synonymous_variant 0.19
fbiC 1303800 c.870G>T synonymous_variant 0.22
fbiC 1303818 c.888C>G synonymous_variant 0.24
fbiC 1303846 p.Phe306Val missense_variant 0.19
fbiC 1303854 c.924T>C synonymous_variant 0.19
fbiC 1303860 c.930A>C synonymous_variant 0.19
fbiC 1303869 c.939T>C synonymous_variant 0.19
fbiC 1303881 c.951G>C synonymous_variant 0.21
fbiC 1303884 c.954T>G synonymous_variant 0.22
fbiC 1303890 c.960G>A synonymous_variant 0.2
fbiC 1303897 c.967C>T synonymous_variant 0.23
fbiC 1303905 c.975G>C synonymous_variant 0.16
fbiC 1303908 c.978C>G synonymous_variant 0.16
fbiC 1303913 p.Gly328Ala missense_variant 0.15
fbiC 1303947 c.1017T>G synonymous_variant 0.16
fbiC 1303948 p.Gly340Arg missense_variant 0.16
fbiC 1303956 c.1026A>G synonymous_variant 0.16
fbiC 1303961 p.Arg344Leu missense_variant 0.14
embR 1417019 p.Cys110Tyr missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.14
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.18
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.19
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.16
rrl 1473971 n.314G>T non_coding_transcript_exon_variant 0.17
rrl 1473981 n.324_325insT non_coding_transcript_exon_variant 0.2
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.21
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.27
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.23
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.21
rrl 1474036 n.379G>A non_coding_transcript_exon_variant 0.25
rrl 1474040 n.383G>A non_coding_transcript_exon_variant 0.2
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.12
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.16
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.4
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.32
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.27
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.25
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.25
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.21
rrl 1475028 n.1371G>A non_coding_transcript_exon_variant 0.24
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.14
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.14
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.2
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.26
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.15
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.29
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.29
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.25
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.24
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.21
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.24
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.13
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.17
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.17
inhA 1674690 c.489C>G synonymous_variant 0.17
inhA 1674703 c.502T>C synonymous_variant 0.17
inhA 1674708 c.507G>A synonymous_variant 0.18
inhA 1674718 c.517A>C synonymous_variant 0.14
inhA 1674729 c.528G>C synonymous_variant 0.17
inhA 1674883 p.Ile228Val missense_variant 0.91
rpsA 1833595 c.54T>G synonymous_variant 0.16
rpsA 1833667 c.126C>G synonymous_variant 0.15
rpsA 1833703 c.162C>T synonymous_variant 0.17
rpsA 1833928 c.387G>C synonymous_variant 0.16
rpsA 1833940 c.399C>G synonymous_variant 0.18
rpsA 1833971 c.430C>T synonymous_variant 0.17
rpsA 1833979 c.438T>C synonymous_variant 0.17
rpsA 1833997 c.456G>C synonymous_variant 0.18
rpsA 1834021 c.480C>T synonymous_variant 0.2
rpsA 1834030 c.489C>G synonymous_variant 0.18
rpsA 1834294 c.753G>T synonymous_variant 0.14
rpsA 1834297 c.756C>G synonymous_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.19
rpsA 1834357 c.816T>C synonymous_variant 0.18
rpsA 1834366 c.825A>G synonymous_variant 0.19
rpsA 1834369 c.828C>G synonymous_variant 0.19
rpsA 1834375 c.834G>A synonymous_variant 0.17
rpsA 1834633 c.1092A>G synonymous_variant 0.15
rpsA 1834639 c.1098T>C synonymous_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2154917 p.Glu399Lys missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2167983 p.Gly877Asp missense_variant 1.0
PPE35 2170048 p.Leu189Val missense_variant 0.21
PPE35 2170053 p.Thr187Ser missense_variant 0.19
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
ahpC 2726051 c.-142G>A upstream_gene_variant 1.0
Rv2752c 3064632 c.1560C>T synonymous_variant 1.0
thyX 3067349 c.597G>C synonymous_variant 0.13
thyX 3067355 c.591A>G synonymous_variant 0.14
thyX 3067817 c.129C>T synonymous_variant 0.96
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474597 c.591C>A synonymous_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
fbiB 3642173 c.639G>A synonymous_variant 1.0
rpoA 3877542 c.966C>T synonymous_variant 0.17
rpoA 3877553 p.Glu319Gln missense_variant 0.19
rpoA 3877587 c.921A>G synonymous_variant 0.21
rpoA 3877599 c.909G>A synonymous_variant 0.18
rpoA 3877656 c.852T>C synonymous_variant 0.16
rpoA 3877770 c.738A>G synonymous_variant 0.18
rpoA 3877776 c.732T>C synonymous_variant 0.18
rpoA 3877782 c.726T>C synonymous_variant 0.17
rpoA 3877818 c.690A>G synonymous_variant 0.2
rpoA 3877839 c.669G>C synonymous_variant 0.2
rpoA 3877857 c.651G>A synonymous_variant 0.26
rpoA 3877866 c.642G>C synonymous_variant 0.25
rpoA 3877872 c.636C>T synonymous_variant 0.27
rpoA 3877875 c.633T>C synonymous_variant 0.29
rpoA 3877896 c.612G>C synonymous_variant 0.23
rpoA 3877900 p.Ser203Asn missense_variant 0.2
rpoA 3877905 c.603A>G synonymous_variant 0.19
rpoA 3877909 p.Asn200Ser missense_variant 0.17
rpoA 3877920 c.588G>C synonymous_variant 0.17
rpoA 3877962 c.546G>T synonymous_variant 0.13
rpoA 3877965 c.543C>T synonymous_variant 0.14
rpoA 3878076 c.432C>T synonymous_variant 0.14
rpoA 3878082 c.426T>C synonymous_variant 0.15
rpoA 3878094 c.414C>G synonymous_variant 0.18
rpoA 3878103 c.405A>G synonymous_variant 0.17
rpoA 3878106 c.402G>C synonymous_variant 0.14
rpoA 3878118 c.390T>C synonymous_variant 0.16
rpoA 3878687 c.-180A>C upstream_gene_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 0.14
clpC1 4038908 c.1797C>G synonymous_variant 0.16
clpC1 4038911 c.1794G>C synonymous_variant 0.16
clpC1 4038923 c.1782A>G synonymous_variant 0.15
clpC1 4038932 c.1773G>C synonymous_variant 0.15
clpC1 4038989 c.1716T>C synonymous_variant 0.15
clpC1 4039022 c.1683A>G synonymous_variant 0.17
clpC1 4039034 c.1671C>G synonymous_variant 0.18
clpC1 4039037 c.1668T>C synonymous_variant 0.17
clpC1 4039064 c.1641C>T synonymous_variant 0.17
clpC1 4039094 c.1611C>G synonymous_variant 0.17
clpC1 4039103 c.1602T>C synonymous_variant 0.15
clpC1 4039106 c.1599G>C synonymous_variant 0.15
clpC1 4039112 c.1593C>G synonymous_variant 0.15
clpC1 4040033 c.672G>C synonymous_variant 0.17
clpC1 4040042 c.663C>T synonymous_variant 0.17
clpC1 4040048 c.657C>T synonymous_variant 0.18
clpC1 4040517 p.Val63Ala missense_variant 0.97
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241042 p.Asn394Asp missense_variant 0.86
embC 4241047 c.1185C>A synonymous_variant 0.14
embC 4241050 c.1188T>G synonymous_variant 0.14
embC 4241053 c.1191G>C synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243848 p.Val206Met missense_variant 1.0
embA 4244612 c.1380C>G synonymous_variant 0.16
embA 4244615 c.1383G>C synonymous_variant 0.17
embA 4244619 c.1387T>C synonymous_variant 0.17
embA 4244631 p.Thr467Leu missense_variant 0.15
embA 4245969 p.Pro913Ser missense_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338603 c.-82C>T upstream_gene_variant 1.0
whiB6 4338613 c.-92G>A upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407780 c.423G>A synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 0.96
Rv3083 3432818 c.-15685_*836del transcript_ablation 1.0