lineage | Count |
---|---|
40 | |
lineage4.9;lineage4.2.1 | 1 |
lineage4.3.4.2.1 | 3 |
lineage4 | 92 |
lineage4.2.2.2;lineage3 | 1 |
lineage4.9 | 93 |
lineage4.3.2.1 | 3 |
lineage4.2.1 | 3 |
lineage4.4.1.1 | 2 |
lineage4.3.1 | 1 |
lineage1.1.2 | 2 |
lineage2.2.1 | 19 |
lineage2.2 | 4 |
lineage4.1 | 3 |
lineage4.1.1.3 | 3 |
lineage4.4.2;lineage2.2.1 | 1 |
lineage4.1.2 | 3 |
lineage4.8 | 3 |
lineage4.8.1 | 1 |
lineage4.4.1.2 | 1 |
lineage4.9.1 | 1 |
La1.7.X-unk4 | 1 |
lineage4.1.2.1 | 6 |
La1.8.1 | 6 |
lineage5.1.2 | 1 |
lineage3.1.1 | 3 |
La1.3 | 5 |
lineage4.9;La1.3 | 2 |
lineage2.2.1.2 | 1 |
lineage2.2.2 | 1 |
lineage4.5 | 3 |
lineage1.1.3.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
La1.7.1 | 1 |
lineage3 | 13 |
lineage1.2.1.1 | 2 |
lineage2.1 | 2 |
lineage4.1.1 | 1 |
lineage3.1 | 1 |
lineage5.1.4 | 1 |
lineage1.1.1 | 1 |
lineage4.2.2 | 1 |
lineage4.6.2.2 | 2 |
lineage4.9;lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 340 |
ID | Drug resistance | Lineage | Country iso2 | ERR4821712 | HR-TB | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6046385 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046611 | HR-TB | lineage4.9 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR4830353 | Other | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046802 | Other | lineage4 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6511621 | HR-TB | None | ERR4831117 | HR-TB | None | ERR4831746 | MDR-TB | lineage2.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831638 | Sensitive | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR502943 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831841 | HR-TB | lineage4.4.2;lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323085 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR1063855 | Other | lineage4 | None | ERR10796569 | Other | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283055 | HR-TB | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363449 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR373947 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4024991 | Other | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4187604 | RR-TB | La1.8.1 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4188222 | MDR-TB | La1.8.1 | None | ERR4188247 | HR-TB | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769408 | Other | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4798431 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6359070 | Other | lineage4.9 | None | ERR4811493 | HR-TB | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR4812155 | Sensitive | None | ERR6359069 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR752229 | Other | lineage4.5 | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9634265 | Sensitive | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13837443 | Sensitive | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR16134492 | RR-TB | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692905 | HR-TB | None | SRR3675488 | HR-TB | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675501 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4814496 | RR-TB | lineage4.1.2 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675222 | Other | None | ERR3275450 | Other | lineage4 | None | SRR3675229 | Other | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR1750921 | Sensitive | lineage4.1.1.3 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675265 | Other | lineage4 | None | ERR4814841 | Other | lineage4.1 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675279 | Other | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | ERR4816470 | Other | lineage3 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR212001 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR2509886 | RR-TB | lineage3 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4816604 | RR-TB | lineage4.1.2 | None | ERR2512606 | MDR-TB | lineage3 | None | ERR2512770 | Other | lineage4.2.1 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR4817584 | MDR-TB | lineage3 | None | SRR5341453 | Sensitive | None | SRR5341396 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4820266 | RR-TB | lineage3 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341395 | Sensitive | lineage3 | None | ERR4820746 | RR-TB | lineage3 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4820318 | Other | lineage4.2.2 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | ERR2446382 | Other | lineage4 | None | SRR5341315 | Sensitive | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR6045503 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517475 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045519 | HR-TB | None |
---|