TB-Profiler result

Run: ERR9896153
Summary

Run ID: ERR9896153

Sample name:

Date: 02-04-2023 13:29:26

Number of reads: 651537

Percentage reads mapped: 62.97

Strain: lineage4.4.1.1

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.4 Euro-American S;T None 1.0
lineage4.4.1 Euro-American (S-type) S;T None 1.0
lineage4.4.1.1 Euro-American S;Orphans None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.2 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.17 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
mshA 575920 c.573C>G synonymous_variant 0.13
mshA 575932 c.585G>A synonymous_variant 0.12
mshA 575944 c.597T>C synonymous_variant 0.13
ccsA 619801 c.-90C>A upstream_gene_variant 0.22
ccsA 619936 p.Trp16Arg missense_variant 0.17
rpoB 760859 c.1053T>C synonymous_variant 0.14
rpoB 760862 c.1056G>C synonymous_variant 0.13
rpoB 760869 p.Val355Thr missense_variant 0.14
rpoB 760886 c.1080A>G synonymous_variant 0.15
rpoB 761037 c.1231T>C synonymous_variant 0.21
rpoB 761051 c.1245G>C synonymous_variant 0.17
rpoB 761054 c.1248G>C synonymous_variant 0.17
rpoB 761057 c.1251G>C synonymous_variant 0.16
rpoB 761060 c.1254C>G synonymous_variant 0.17
rpoB 761084 c.1278C>A synonymous_variant 0.2
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.19
rpoB 761096 c.1290G>C synonymous_variant 0.19
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.29
rpoB 761102 c.1296A>G synonymous_variant 0.28
rpoB 761132 c.1326G>C synonymous_variant 0.2
rpoB 761133 c.1327T>C synonymous_variant 0.3
rpoB 761150 c.1344A>T synonymous_variant 0.21
rpoB 761159 c.1353G>C synonymous_variant 0.18
rpoB 761165 c.1359G>C synonymous_variant 0.26
rpoB 761180 c.1374A>C synonymous_variant 0.26
rpoB 761186 p.Glu460Asp missense_variant 0.17
rpoB 761189 c.1383T>C synonymous_variant 0.27
rpoB 761192 c.1386C>G synonymous_variant 0.17
rpoB 761195 c.1389G>C synonymous_variant 0.28
rpoB 761201 c.1395G>A synonymous_variant 0.17
rpoB 761204 c.1398C>T synonymous_variant 0.18
rpoB 761207 c.1401C>A synonymous_variant 0.19
rpoB 761213 c.1407G>C synonymous_variant 0.29
rpoB 761219 c.1413G>C synonymous_variant 0.18
rpoB 761234 c.1428G>C synonymous_variant 0.14
rpoB 761249 c.1443A>G synonymous_variant 0.19
rpoB 763014 p.Met1070Leu missense_variant 0.13
rpoB 763017 p.Gln1071Glu missense_variant 0.13
rpoC 763022 c.-348C>T upstream_gene_variant 0.19
rpoC 763028 c.-342T>C upstream_gene_variant 0.2
rpoC 763031 c.-339T>C upstream_gene_variant 0.18
rpoB 763038 p.Thr1078Ala missense_variant 0.17
rpoC 763043 c.-327G>C upstream_gene_variant 0.17
rpoC 763053 c.-317T>C upstream_gene_variant 0.18
rpoC 763067 c.-303C>G upstream_gene_variant 0.16
rpoC 763070 c.-300T>C upstream_gene_variant 0.19
rpoB 763077 p.Val1091Thr missense_variant 0.15
rpoC 763103 c.-267G>C upstream_gene_variant 0.15
rpoC 763115 c.-255T>C upstream_gene_variant 0.19
rpoC 763642 c.273G>C synonymous_variant 0.14
rpoC 763648 c.279C>T synonymous_variant 0.14
rpoC 763657 p.Glu96Asp missense_variant 0.14
rpoC 763660 c.291T>G synonymous_variant 0.14
rpoC 763666 c.297G>C synonymous_variant 0.14
rpoC 763675 c.306C>G synonymous_variant 0.14
rpoC 763699 c.330G>T synonymous_variant 0.18
rpoC 763708 c.339G>C synonymous_variant 0.21
rpoC 763714 c.345G>C synonymous_variant 0.15
rpoC 763717 c.348T>C synonymous_variant 0.15
rpoC 763718 p.Leu117Val missense_variant 0.14
rpoC 763723 c.354G>C synonymous_variant 0.14
rpoC 763729 c.360G>C synonymous_variant 0.16
rpoC 763732 c.363C>G synonymous_variant 0.16
rpoC 763735 c.366G>C synonymous_variant 0.16
rpoC 763744 c.375G>C synonymous_variant 0.15
rpoC 763751 p.Ile128Val missense_variant 0.15
rpoC 764140 c.771C>T synonymous_variant 0.13
rpoC 764266 c.897T>C synonymous_variant 0.13
rpoC 764269 c.900G>C synonymous_variant 0.13
rpoC 764278 c.909A>G synonymous_variant 0.14
rpoC 764293 c.924G>C synonymous_variant 0.15
rpoC 764485 c.1116G>C synonymous_variant 0.21
rpoC 764491 c.1122G>T synonymous_variant 0.18
rpoC 764497 c.1128A>G synonymous_variant 0.17
rpoC 764503 c.1134G>T synonymous_variant 0.19
rpoC 764509 c.1140G>C synonymous_variant 0.19
rpoC 764512 c.1143G>C synonymous_variant 0.18
rpoC 764521 c.1152T>C synonymous_variant 0.22
rpoC 764530 c.1161C>T synonymous_variant 0.17
rpoC 764536 c.1167G>C synonymous_variant 0.21
rpoC 764566 c.1197C>G synonymous_variant 0.15
rpoC 764626 c.1257C>T synonymous_variant 0.15
rpoC 764632 c.1263T>C synonymous_variant 0.14
rpoC 764650 c.1281G>T synonymous_variant 0.14
rpoC 766918 c.3549C>T synonymous_variant 0.15
rpoC 766933 c.3564A>G synonymous_variant 0.17
rpoC 766945 c.3576A>G synonymous_variant 0.17
rpoC 766963 c.3594T>C synonymous_variant 0.16
rpoC 766972 c.3603G>C synonymous_variant 0.17
rpoC 766978 c.3609C>A synonymous_variant 0.16
rpoC 766996 c.3627C>T synonymous_variant 0.19
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 0.14
rpsL 781898 c.339A>T synonymous_variant 0.14
rpsL 781929 p.Gly124Ser missense_variant 0.13
fbiC 1304137 p.Ala403Ser missense_variant 0.13
fbiC 1304142 c.1212G>C synonymous_variant 0.13
fbiC 1305021 c.2091C>A synonymous_variant 0.14
fbiC 1305033 c.2103T>G synonymous_variant 0.14
fbiC 1305321 c.2391G>A synonymous_variant 0.96
Rv1258c 1406938 p.Ala135Thr missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.14
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.14
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.14
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.18
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.21
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.23
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.25
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.23
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.16
rrs 1472286 n.441_442insT non_coding_transcript_exon_variant 0.15
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.15
rrs 1472292 n.447A>T non_coding_transcript_exon_variant 0.15
rrs 1472293 n.449delG non_coding_transcript_exon_variant 0.16
rrs 1472297 n.453_454delGT non_coding_transcript_exon_variant 0.15
rrs 1472308 n.464_466delCTC non_coding_transcript_exon_variant 0.14
rrs 1472313 n.469_470delAT non_coding_transcript_exon_variant 0.14
rrs 1472319 n.474C>G non_coding_transcript_exon_variant 0.13
rrs 1472325 n.480G>T non_coding_transcript_exon_variant 0.13
rrs 1472326 n.481T>G non_coding_transcript_exon_variant 0.13
rrs 1472329 n.484A>T non_coding_transcript_exon_variant 0.13
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.23
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.26
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.39
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.39
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.38
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.37
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.35
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.34
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.32
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.3
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.31
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.31
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.3
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.3
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.31
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.31
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.34
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.34
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.36
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.36
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.35
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.35
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.35
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.37
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.37
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.35
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.4
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.45
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.46
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.48
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.39
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.35
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.33
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.31
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.3
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.31
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.31
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.36
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.38
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.47
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.41
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.38
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.39
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 0.37
rrs 1472841 n.996_997insC non_coding_transcript_exon_variant 0.34
rrs 1472845 n.1000G>A non_coding_transcript_exon_variant 0.35
rrs 1472846 n.1002delG non_coding_transcript_exon_variant 0.33
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.33
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.33
rrs 1472868 n.1023T>G non_coding_transcript_exon_variant 0.31
rrs 1472874 n.1029C>A non_coding_transcript_exon_variant 0.31
rrs 1472875 n.1030_1031insTTAGTTGGTC non_coding_transcript_exon_variant 0.32
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.36
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.31
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.31
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.31
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.34
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.38
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.36
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.4
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.41
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.42
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.42
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.46
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.5
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.5
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.47
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.48
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.46
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.46
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.47
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.45
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.45
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.45
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.48
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.5
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.52
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.55
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.54
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.54
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.48
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.41
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.41
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.34
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.34
rrs 1473288 n.1443C>G non_coding_transcript_exon_variant 0.32
rrs 1473289 n.1444_1445insTTTTG non_coding_transcript_exon_variant 0.33
rrs 1473293 n.1449delA non_coding_transcript_exon_variant 0.34
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.34
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.34
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.33
rrl 1473384 n.-274A>G upstream_gene_variant 0.2
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.2
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.15
rrl 1474483 n.826C>T non_coding_transcript_exon_variant 0.14
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.13
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.13
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.14
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 0.14
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 0.14
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.14
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.14
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.14
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.14
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.14
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.14
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.14
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.14
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.14
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.18
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.39
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 0.4
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.4
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.4
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.4
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.4
rrl 1474674 n.1018delC non_coding_transcript_exon_variant 0.47
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.49
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.49
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.47
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.47
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.49
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.51
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.5
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.46
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.46
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.45
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.47
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.44
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.44
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.39
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.36
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.39
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.36
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.3
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.25
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.3
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.2
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.15
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.17
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.17
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.17
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.25
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.32
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.31
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.32
rrl 1475767 n.2110_2111insT non_coding_transcript_exon_variant 0.3
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.37
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.56
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.56
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.54
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.53
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.54
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.54
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.56
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.57
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.52
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.5
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.49
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.47
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.46
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.44
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.43
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.35
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 0.29
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.29
rrl 1475998 n.2341C>G non_coding_transcript_exon_variant 0.29
rrl 1476000 n.2343G>A non_coding_transcript_exon_variant 0.27
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.28
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.24
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.19
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.19
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.19
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.2
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.18
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.23
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.17
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.18
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.18
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.18
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.18
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.18
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.17
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.18
rrl 1476268 n.2611A>G non_coding_transcript_exon_variant 0.18
rrl 1476275 n.2618T>C non_coding_transcript_exon_variant 0.18
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.18
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.18
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.21
rrl 1476290 n.2636_2637insCATGGC non_coding_transcript_exon_variant 0.17
rrl 1476295 n.2639_2644delCCCCGA non_coding_transcript_exon_variant 0.18
rrl 1476306 n.2649A>G non_coding_transcript_exon_variant 0.15
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.15
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.16
rrl 1476311 n.2654G>T non_coding_transcript_exon_variant 0.16
rrl 1476312 n.2655T>G non_coding_transcript_exon_variant 0.17
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.32
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.3
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.3
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.3
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.32
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.3
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.24
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.13
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.13
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.13
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.13
inhA 1674501 p.Gln100His missense_variant 0.13
rpsA 1834228 c.687C>T synonymous_variant 0.19
rpsA 1834234 c.693G>C synonymous_variant 0.22
rpsA 1834240 c.699T>C synonymous_variant 0.19
rpsA 1834246 c.705G>T synonymous_variant 0.19
rpsA 1834249 c.708T>C synonymous_variant 0.14
rpsA 1834261 c.720A>G synonymous_variant 0.15
rpsA 1834264 c.723G>C synonymous_variant 0.15
rpsA 1834294 c.753G>C synonymous_variant 0.17
rpsA 1834298 p.Gln253Glu missense_variant 0.15
rpsA 1834306 c.765T>C synonymous_variant 0.17
rpsA 1834307 p.Asp256Gln missense_variant 0.15
rpsA 1834312 c.771G>A synonymous_variant 0.15
rpsA 1834327 c.786G>T synonymous_variant 0.14
rpsA 1834345 c.804C>T synonymous_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.18
rpsA 1834354 c.813G>C synonymous_variant 0.15
rpsA 1834357 c.816T>C synonymous_variant 0.15
rpsA 1834360 c.819G>C synonymous_variant 0.15
rpsA 1834361 c.820T>C synonymous_variant 0.15
rpsA 1834366 c.825A>G synonymous_variant 0.19
rpsA 1834375 c.834G>C synonymous_variant 0.14
rpsA 1834378 c.837T>C synonymous_variant 0.14
rpsA 1834387 c.846C>T synonymous_variant 0.15
rpsA 1834411 c.870T>C synonymous_variant 0.17
rpsA 1834417 c.876G>C synonymous_variant 0.15
rpsA 1834423 c.882G>C synonymous_variant 0.14
rpsA 1834435 c.894G>C synonymous_variant 0.13
rpsA 1834451 c.910T>C synonymous_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102990 p.Val18Ala missense_variant 1.0
katG 2155538 p.Glu192* stop_gained 0.17
PPE35 2169840 p.Gly258Asp missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518532 p.Leu140Met missense_variant 0.12
kasA 2518627 c.513T>C synonymous_variant 0.13
kasA 2518636 c.522C>T synonymous_variant 0.13
kasA 2518642 c.528A>G synonymous_variant 0.14
kasA 2518672 c.558G>C synonymous_variant 0.18
kasA 2518678 c.564C>T synonymous_variant 0.18
kasA 2518684 c.570C>G synonymous_variant 0.2
kasA 2518687 c.573C>T synonymous_variant 0.18
kasA 2518688 p.Val192Phe missense_variant 0.18
kasA 2518705 c.591T>G synonymous_variant 0.18
kasA 2518711 c.597A>G synonymous_variant 0.18
kasA 2518714 c.600A>T synonymous_variant 0.2
kasA 2518717 c.603C>T synonymous_variant 0.18
kasA 2518723 c.609G>A synonymous_variant 0.18
kasA 2518747 c.633C>G synonymous_variant 0.13
kasA 2518768 c.654C>G synonymous_variant 0.15
kasA 2518789 c.675G>C synonymous_variant 0.12
kasA 2518792 c.678C>A synonymous_variant 0.12
folC 2746393 c.1206C>G synonymous_variant 0.13
folC 2746401 p.Ser400Ala missense_variant 0.13
folC 2746402 c.1197T>C synonymous_variant 0.13
folC 2746416 p.Glu395Gln missense_variant 0.14
folC 2746420 c.1179A>C synonymous_variant 0.13
thyX 3067619 c.327A>C synonymous_variant 0.14
thyX 3067634 c.312C>G synonymous_variant 0.14
thyX 3067643 c.303C>T synonymous_variant 0.14
thyX 3067652 c.294T>C synonymous_variant 0.14
thyX 3067661 c.285C>G synonymous_variant 0.18
thyX 3067685 c.261A>C synonymous_variant 0.17
thyX 3067694 c.252G>C synonymous_variant 0.17
thyX 3067718 c.228C>G synonymous_variant 0.18
thyX 3067721 c.225T>C synonymous_variant 0.19
thyX 3067724 c.222G>A synonymous_variant 0.2
thyX 3067727 c.219A>C synonymous_variant 0.25
thyX 3067736 c.210C>T synonymous_variant 0.25
thyX 3067739 c.207T>C synonymous_variant 0.25
thyX 3067742 c.204A>C synonymous_variant 0.25
thyX 3067762 c.184C>A synonymous_variant 0.21
thyX 3067765 p.Leu61Ile missense_variant 0.21
thyX 3067781 c.165C>G synonymous_variant 0.21
thyX 3067793 c.153T>C synonymous_variant 0.13
thyX 3067799 c.147G>A synonymous_variant 0.17
thyX 3067802 c.144C>G synonymous_variant 0.17
thyX 3067811 c.135G>A synonymous_variant 0.13
thyX 3067937 p.Glu3Asp missense_variant 0.25
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339689 p.Thr191Asn missense_variant 0.14
Rv3083 3448608 c.105G>A synonymous_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612665 p.Val151Ala missense_variant 1.0
clpC1 4039364 c.1341C>G synonymous_variant 0.15
clpC1 4039724 c.981A>G synonymous_variant 0.14
clpC1 4039751 c.954A>G synonymous_variant 0.13
clpC1 4039757 c.948A>G synonymous_variant 0.13
clpC1 4039760 c.945T>C synonymous_variant 0.14
clpC1 4039769 c.936C>G synonymous_variant 0.14
clpC1 4039775 c.930G>C synonymous_variant 0.14
clpC1 4039778 c.927A>G synonymous_variant 0.14
clpC1 4039831 c.874T>C synonymous_variant 0.15
clpC1 4039865 c.840T>C synonymous_variant 0.14
embC 4240780 c.918T>C synonymous_variant 0.13
embC 4240783 c.921G>C synonymous_variant 0.13
embC 4240789 c.927T>C synonymous_variant 0.13
embC 4240811 p.Phe317Leu missense_variant 0.14
embC 4240819 c.957A>G synonymous_variant 0.14
embC 4240831 c.969T>G synonymous_variant 0.14
embC 4240867 c.1005T>G synonymous_variant 0.17
embC 4240870 c.1008T>C synonymous_variant 0.18
embC 4240873 c.1011C>G synonymous_variant 0.18
embC 4240880 p.Ala340Thr missense_variant 0.2
embC 4240885 c.1023T>C synonymous_variant 0.2
embC 4240897 c.1035C>G synonymous_variant 0.18
embC 4240898 c.1036_1038delCTAinsTTG synonymous_variant 0.18
embC 4240921 c.1059C>G synonymous_variant 0.12
embC 4240924 c.1062C>G synonymous_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4246764 p.Pro84Gln missense_variant 0.14
ethA 4328384 c.-911A>G upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0