EBG00000313325 - n.628G>T
Drug resistance types
26 Sensitive
35 RR-TB
13 HR-TB
26 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
92 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 27 |
| lineage4.4.2 | 2 |
| lineage4 | 12 |
| lineage4.2.2 | 1 |
| lineage2.2.2 | 3 |
| lineage4.3.3 | 5 |
| lineage4.9 | 52 |
| La1.8.1 | 1 |
| La1.3 | 2 |
| lineage6 | 4 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.2.1 | 3 |
| lineage3.1.1 | 3 |
| lineage4.6 | 1 |
| lineage4.3.1.1 | 2 |
| lineage3 | 16 |
| lineage1.2.2.2 | 2 |
| lineage4.4.1.1 | 3 |
| La1.6 | 1 |
| La1.2 | 1 |
| La2 | 1 |
| lineage4.4 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.5 | 2 |
| lineage4.8 | 14 |
| lineage2.2.1.1 | 3 |
| lineage1.1.2 | 4 |
| La1.7.1 | 1 |
| lineage2.2 | 2 |
| lineage4.1.2.1 | 10 |
| lineage4.3.2.1 | 2 |
| 6 | |
| lineage5 | 1 |
| lineage3.1.3 | 1 |
| lineage3.1.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.1.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.1.1.3.1 | 3 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.7 | 1 |
| lineage4.3.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.3.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 209 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | DRR184982 | RR-TB | lineage2.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | DRR034348 | Other | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | DRR188816 | Sensitive | lineage4.2.2 | None | DRR185024 | Other | lineage2.2.2 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR3439441 | Other | La1.8.1 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769517 | Other | La1.3 | None | ERR3806588 | Other | lineage6 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769516 | Other | La1.3 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR5908226 | Sensitive | lineage4.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358951 | HR-TB | lineage4 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117788 | Other | lineage3 | None | ERR9787033 | Sensitive | lineage6 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | ERR9787336 | Other | lineage6 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR13199734 | Other | La1.2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR13888750 | Other | La2 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18213726 | Other | lineage3 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | SRR19304094 | Other | lineage6 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR21469201 | Other | La1.7.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR6207283 | Sensitive | lineage4.3.3 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR22424884 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815777 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814699 | HR-TB | lineage4.1.2.1 | gb | SRR3675265 | Other | lineage4 | None | ERR4814748 | Other | lineage4.8 | None | ERR1750926 | Other | lineage4.3.2.1 | za | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR5818419 | Sensitive | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675509 | Other | lineage4.9 | None | ERR4816967 | RR-TB | lineage5 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR4815994 | Other | lineage3 | gb | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027250 | Other | lineage3.1.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816183 | Other | None | SRR3675565 | Other | lineage3 | None | ERR2229198 | MDR-TB | lineage4.8 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR4033493 | Sensitive | lineage4.3.2.1 | None | SRR5818426 | Other | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2432997 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818977 | RR-TB | lineage4.1.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4817555 | RR-TB | lineage3 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819217 | Other | lineage1.2.2.2 | None | SRR5818458 | Other | None | ERR4819456 | Other | lineage4.8 | None | ERR4819357 | Other | lineage4.9 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR2514491 | Sensitive | lineage1.1.2 | gb | ERR4819933 | Other | lineage4.9 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR2514565 | Other | lineage3.1.2.1 | gb | ERR4820889 | Other | lineage3 | gb | ERR4819784 | Other | lineage4.1.2.1 | None | SRR5818445 | Other | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR5535701 | Sensitive | lineage4.1.2.1 | None | ERR4821214 | RR-TB | None | ERR4821981 | Other | lineage4.1.2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818410 | Sensitive | lineage4.9 | None | SRR5818411 | MDR-TB | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818413 | HR-TB | lineage4.9 | None | SRR5818430 | Sensitive | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818435 | Sensitive | lineage4.9 | None | SRR5818421 | Sensitive | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818437 | MDR-TB | lineage4.9 | None | SRR6045759 | RR-TB | lineage2.2.1 | gb | SRR5818462 | Other | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044904 | Other | lineage3 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR6044936 | Other | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046246 | Other | lineage3 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046818 | Other | lineage4.2.1 | gb | SRR6046359 | Other | lineage4.7 | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR4830667 | Sensitive | lineage4.1.2.1 | dz | SRR6046616 | Other | lineage4.3.1.1 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046815 | Other | lineage3 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6046852 | MDR-TB | lineage3 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None |
|---|
