TB-Profiler result

Run: SRR18003047
Summary

Run ID: SRR18003047

Sample name:

Date: 03-04-2023 19:15:37

Number of reads: 1019312

Percentage reads mapped: 26.38

Strain: lineage2.2.1

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.3 rifampicin
rpoB 761155 p.Ser450Leu missense_variant 0.97 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.14 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 1.0 streptomycin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.27 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.4 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.47 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.32 kanamycin, capreomycin, aminoglycosides, amikacin
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
embA 4243222 c.-11C>A upstream_gene_variant 0.86 ethambutol
embB 4247429 p.Met306Val missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8921 c.1620C>G synonymous_variant 0.94
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 0.18
rpoB 761051 c.1245G>C synonymous_variant 0.18
rpoB 761054 c.1248G>C synonymous_variant 0.27
rpoB 761057 c.1251G>C synonymous_variant 0.19
rpoB 761060 c.1254C>G synonymous_variant 0.29
rpoB 761084 c.1278C>A synonymous_variant 0.16
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.24
rpoB 761096 c.1290G>C synonymous_variant 0.2
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.16
rpoB 761102 c.1296A>G synonymous_variant 0.23
rpoB 761126 c.1320G>C synonymous_variant 0.2
rpoB 761132 c.1326G>C synonymous_variant 0.25
rpoB 761133 c.1327T>C synonymous_variant 0.28
rpoB 761150 c.1344A>C synonymous_variant 0.29
rpoB 761159 c.1353G>C synonymous_variant 0.26
rpoB 761165 c.1359G>C synonymous_variant 0.27
rpoB 761180 c.1374A>G synonymous_variant 0.16
rpoB 761186 p.Glu460Asp missense_variant 0.13
rpoB 761189 c.1383T>C synonymous_variant 0.17
rpoB 761192 c.1386C>G synonymous_variant 0.14
rpoB 761195 c.1389G>C synonymous_variant 0.14
rpoB 761201 c.1395G>A synonymous_variant 0.14
rpoB 761219 c.1413G>C synonymous_variant 0.15
rpoB 761234 c.1428G>T synonymous_variant 0.17
rpoB 761974 p.His723Leu missense_variant 0.13
rpoB 761990 c.2184G>C synonymous_variant 0.13
rpoB 762003 p.Asn733His missense_variant 0.13
rpoB 762009 p.Leu735Val missense_variant 0.15
rpoB 762024 p.Val740Met missense_variant 0.14
rpoB 762053 c.2247T>C synonymous_variant 0.12
rpoB 762057 p.Ile751Val missense_variant 0.13
rpoB 762062 c.2256T>C synonymous_variant 0.11
rpoB 762065 c.2259T>C synonymous_variant 0.11
rpoB 762071 p.Asp755Glu missense_variant 0.12
rpoB 762080 c.2274G>C synonymous_variant 0.17
rpoB 762085 p.Ala760Glu missense_variant 0.16
rpoB 762089 c.2283G>A synonymous_variant 0.15
rpoB 762110 c.2304G>C synonymous_variant 0.12
rpoB 762143 c.2337T>C synonymous_variant 0.18
rpoB 762149 c.2343G>C synonymous_variant 0.17
rpoB 762156 p.Val784Ile missense_variant 0.16
rpoB 762176 c.2370T>C synonymous_variant 0.18
rpoB 762178 p.Arg791Pro missense_variant 0.11
rpoB 762181 p.Asp792Ala missense_variant 0.12
rpoB 762185 c.2379G>C synonymous_variant 0.15
rpoB 762194 c.2388G>C synonymous_variant 0.19
rpoB 762212 c.2406G>C synonymous_variant 0.18
rpoB 762218 c.2412T>C synonymous_variant 0.11
rpoB 762855 p.Val1017Ile missense_variant 0.12
rpoB 762858 p.Thr1018Ser missense_variant 0.12
rpoC 762863 c.-507T>G upstream_gene_variant 0.12
rpoB 762871 p.Met1022Thr missense_variant 0.12
rpoB 762878 p.Ile1024Met missense_variant 0.12
rpoB 762879 p.Met1025Leu missense_variant 0.12
rpoC 762899 c.-471G>C upstream_gene_variant 0.11
rpoC 762926 c.-444C>G upstream_gene_variant 0.24
rpoC 762929 c.-441G>C upstream_gene_variant 0.24
rpoC 762947 c.-423C>G upstream_gene_variant 0.3
rpoC 762971 c.-399G>C upstream_gene_variant 0.33
rpoC 762977 c.-393C>T upstream_gene_variant 0.26
rpoC 762980 c.-390T>C upstream_gene_variant 0.28
rpoC 762989 c.-381G>C upstream_gene_variant 0.3
rpoC 762995 c.-375G>C upstream_gene_variant 0.28
rpoB 763005 p.Cys1067Val missense_variant 0.25
rpoB 763014 p.Met1070Leu missense_variant 0.28
rpoB 763017 p.Gln1071Glu missense_variant 0.28
rpoC 763022 c.-348C>G upstream_gene_variant 0.27
rpoC 763028 c.-342T>C upstream_gene_variant 0.28
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 0.29
rpoC 763043 c.-327G>C upstream_gene_variant 0.28
rpoC 763053 c.-317T>C upstream_gene_variant 0.27
rpoC 763070 c.-300T>C upstream_gene_variant 0.18
rpoB 763077 p.Val1091Ser missense_variant 0.21
rpoC 763486 c.117T>C synonymous_variant 0.16
rpoC 763492 c.123G>C synonymous_variant 0.14
rpoC 763507 c.138G>C synonymous_variant 0.21
rpoC 763528 c.159G>C synonymous_variant 0.23
rpoC 763531 c.162G>C synonymous_variant 0.23
rpoC 763534 c.165T>C synonymous_variant 0.23
rpoC 763537 c.168C>G synonymous_variant 0.19
rpoC 763546 c.177A>G synonymous_variant 0.23
rpoC 763550 p.Tyr61Ala missense_variant 0.23
rpoC 763570 c.201G>C synonymous_variant 0.35
rpoC 763578 p.Phe70Tyr missense_variant 0.35
rpoC 763585 c.216C>G synonymous_variant 0.19
rpoC 763589 p.Ile74Val missense_variant 0.23
rpoC 763600 c.231C>G synonymous_variant 0.12
rpoC 763606 c.237C>A synonymous_variant 0.31
rpoC 763615 c.246G>C synonymous_variant 0.31
rpoC 763618 c.249C>T synonymous_variant 0.31
rpoC 763622 p.Ala85Ser missense_variant 0.31
rpoC 763625 p.Lys86Arg missense_variant 0.12
rpoC 763630 c.261G>C synonymous_variant 0.11
rpoC 763633 c.264T>C synonymous_variant 0.11
rpoC 763636 c.267T>C synonymous_variant 0.15
rpoC 763642 c.273G>C synonymous_variant 0.29
rpoC 763647 p.Gly93Ala missense_variant 0.11
rpoC 763657 p.Glu96Asp missense_variant 0.14
rpoC 763660 c.291T>G synonymous_variant 0.15
rpoC 763666 c.297G>C synonymous_variant 0.14
rpoC 763675 c.306C>G synonymous_variant 0.14
rpoC 763699 c.330G>T synonymous_variant 0.16
rpoC 764310 p.Leu314His missense_variant 0.14
rpoC 764347 c.978G>C synonymous_variant 0.14
rpoC 764371 c.1002G>C synonymous_variant 0.15
rpoC 764377 c.1008C>G synonymous_variant 0.13
rpoC 764380 c.1011G>C synonymous_variant 0.12
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.12
rpoC 764407 p.Arg346Ser missense_variant 0.11
rpoC 764485 c.1116G>C synonymous_variant 0.14
rpoC 764491 c.1122G>T synonymous_variant 0.15
rpoC 764497 c.1128A>G synonymous_variant 0.16
rpoC 764503 c.1134G>T synonymous_variant 0.18
rpoC 764512 c.1143G>C synonymous_variant 0.18
rpoC 764521 c.1152T>C synonymous_variant 0.23
rpoC 764530 c.1161C>T synonymous_variant 0.23
rpoC 764536 c.1167G>C synonymous_variant 0.25
rpoC 764543 p.Thr392Ala missense_variant 0.24
rpoC 764548 c.1179G>C synonymous_variant 0.26
rpoC 764573 p.Leu402Ile missense_variant 0.3
rpoC 764578 c.1209C>G synonymous_variant 0.3
rpoC 764581 c.1212T>C synonymous_variant 0.33
rpoC 764582 p.Leu405Met missense_variant 0.33
rpoC 764593 c.1224C>T synonymous_variant 0.29
rpoC 764602 c.1233C>G synonymous_variant 0.31
rpoC 764605 c.1236G>T synonymous_variant 0.33
rpoC 764611 c.1242G>T synonymous_variant 0.32
rpoC 764626 c.1257C>T synonymous_variant 0.29
rpoC 764632 c.1263T>C synonymous_variant 0.32
rpoC 764647 c.1278C>T synonymous_variant 0.2
rpoC 764650 c.1281G>T synonymous_variant 0.24
rpoC 764653 c.1284G>C synonymous_variant 0.25
rpoC 764656 c.1287C>T synonymous_variant 0.21
rpoC 764662 c.1293G>C synonymous_variant 0.23
rpoC 764724 p.Phe452Cys missense_variant 0.96
rpoC 766722 p.Pro1118Leu missense_variant 0.11
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.17
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.29
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.47
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.36
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.35
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.33
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.15
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.19
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.29
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.89
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.12
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.27
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.21
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.71
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.23
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.11
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.87
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.18
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.21
rrs 1472279 n.434T>G non_coding_transcript_exon_variant 0.11
rrs 1472282 n.437T>G non_coding_transcript_exon_variant 0.25
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.25
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.27
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.3
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.22
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.2
rrs 1472295 n.451_466delAGGTCCGGGTTCTCTC non_coding_transcript_exon_variant 0.25
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.17
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.25
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.27
rrs 1472338 n.493A>C non_coding_transcript_exon_variant 0.18
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.27
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.12
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.29
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.25
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.25
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.28
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.25
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.28
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.28
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.28
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.24
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.27
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.26
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.3
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.26
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.27
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.27
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.25
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.25
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.24
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.16
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.2
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.44
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.38
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.54
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.29
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.37
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.34
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.35
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.37
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.4
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.37
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.37
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.4
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.3
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.34
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.3
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.4
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.25
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.15
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.84
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.13
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.31
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.39
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.36
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.31
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.4
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.14
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.85
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.87
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.43
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.48
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.44
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.53
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.44
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.41
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.17
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.45
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.46
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.44
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.38
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.45
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.15
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.23
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.35
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.17
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.13
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.38
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.31
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.12
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.38
rrs 1472842 n.997G>A non_coding_transcript_exon_variant 0.12
rrs 1472843 n.998A>T non_coding_transcript_exon_variant 0.12
rrs 1472849 n.1005delT non_coding_transcript_exon_variant 0.12
rrs 1472856 n.1012delA non_coding_transcript_exon_variant 0.12
rrs 1472861 n.1018dupT non_coding_transcript_exon_variant 0.14
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.12
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.12
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.16
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.59
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.4
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.19
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.4
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.71
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.62
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.19
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.61
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.76
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.47
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.22
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.4
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.83
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.19
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.36
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.91
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.88
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.92
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.88
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.21
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.25
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.89
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.76
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.9
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.13
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.71
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.84
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.84
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.86
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.49
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.89
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.42
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.29
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.85
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.83
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.23
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.29
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.32
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.84
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.85
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.16
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.8
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.87
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.28
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.29
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.83
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.76
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.42
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.83
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.14
rrl 1473384 n.-274A>G upstream_gene_variant 0.2
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.2
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.36
rrl 1474125 n.468C>G non_coding_transcript_exon_variant 0.36
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.33
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.36
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.31
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.36
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.36
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.36
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.36
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.33
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.29
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.37
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.26
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.37
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.29
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.29
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.63
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.5
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.59
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.48
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.45
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.61
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.45
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.45
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.62
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.68
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.62
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.61
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.68
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.5
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.65
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.25
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.4
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.5
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.47
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.55
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.35
rrl 1474483 n.826C>T non_coding_transcript_exon_variant 0.17
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.9
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.57
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.43
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.44
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.4
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.4
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.43
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.37
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.52
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.89
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.49
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.47
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.41
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.9
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.41
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.47
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.46
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.18
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.4
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.39
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.49
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.35
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.58
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 0.36
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.8
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.74
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.67
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.88
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.39
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.29
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.21
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.24
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.23
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.62
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.29
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.9
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.18
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.27
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.21
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.56
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.79
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.18
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.65
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.79
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.75
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.3
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.76
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.51
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.75
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.19
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.88
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.44
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.44
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.77
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.17
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.35
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.75
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.61
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.8
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.75
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.4
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.89
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.33
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.31
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.16
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.66
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.47
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.32
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.29
rrl 1475068 n.1411A>G non_coding_transcript_exon_variant 0.29
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.22
rrl 1475078 n.1421T>C non_coding_transcript_exon_variant 0.22
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.25
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.2
rrl 1475089 n.1432A>T non_coding_transcript_exon_variant 0.18
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.27
rrl 1475094 n.1437C>T non_coding_transcript_exon_variant 0.18
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.33
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.22
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.33
rrl 1475115 n.1458A>G non_coding_transcript_exon_variant 0.22
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.22
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.33
rrl 1475129 n.1472G>T non_coding_transcript_exon_variant 0.2
rrl 1475137 n.1480A>T non_coding_transcript_exon_variant 0.2
rrl 1475155 n.1498A>G non_coding_transcript_exon_variant 0.14
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.14
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.45
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.51
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.31
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.44
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.77
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.47
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.33
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.36
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.77
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.68
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.34
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.35
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.14
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.49
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.32
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.14
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.35
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.57
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.36
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.46
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.77
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.73
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.43
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.38
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.87
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.87
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.44
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.84
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.79
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.77
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.29
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.77
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.48
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.71
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.68
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.72
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.48
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.68
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.52
rrl 1475996 n.2339T>G non_coding_transcript_exon_variant 0.16
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.67
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.64
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.67
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.5
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.2
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.24
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.3
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.24
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.46
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.25
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.22
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.26
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.22
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.48
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.22
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.5
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.31
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.4
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.5
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.53
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.54
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.31
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.83
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.46
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.4
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.83
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.78
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.45
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.35
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.41
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.42
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.55
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.76
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.71
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.72
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.41
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.47
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.17
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.36
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.37
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.24
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.54
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.48
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.3
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.42
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.24
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.89
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.56
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.31
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.45
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.8
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.79
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.8
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.56
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.23
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.23
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.67
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.39
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.23
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.77
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.79
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.42
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.51
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.29
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.49
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.5
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.54
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.38
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.54
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.56
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.36
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.54
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.56
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.13
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.46
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.87
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.81
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.56
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.87
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.9
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.19
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.39
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.48
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.35
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.21
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.67
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.59
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.76
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.16
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.59
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.71
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.12
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.49
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.48
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.55
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.46
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.34
rrl 1476573 n.2916A>C non_coding_transcript_exon_variant 0.24
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.22
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.53
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.25
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.18
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.17
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.16
rpsA 1833661 c.120A>G synonymous_variant 0.11
rpsA 1833668 p.Ile43Val missense_variant 0.11
rpsA 1833676 c.135A>G synonymous_variant 0.12
rpsA 1833694 c.153G>C synonymous_variant 0.12
rpsA 1833727 c.186G>C synonymous_variant 0.12
rpsA 1833742 c.201A>G synonymous_variant 0.13
rpsA 1833770 p.Asn77Asp missense_variant 0.13
rpsA 1833856 c.315A>G synonymous_variant 0.12
rpsA 1833874 c.333T>C synonymous_variant 0.11
rpsA 1833905 p.Lys122Glu missense_variant 0.17
rpsA 1833912 p.Glu124Gly missense_variant 0.16
rpsA 1833915 p.Ala125Val missense_variant 0.15
rpsA 1833921 p.Lys127Thr missense_variant 0.16
rpsA 1833928 c.387G>C synonymous_variant 0.18
rpsA 1833949 c.408T>C synonymous_variant 0.26
rpsA 1833952 c.411C>T synonymous_variant 0.13
rpsA 1833955 c.414G>C synonymous_variant 0.13
rpsA 1833961 c.420C>G synonymous_variant 0.15
rpsA 1833970 c.429G>C synonymous_variant 0.34
rpsA 1833976 c.435C>T synonymous_variant 0.21
rpsA 1833979 c.438T>C synonymous_variant 0.38
rpsA 1833994 c.453G>C synonymous_variant 0.39
rpsA 1833997 c.456G>C synonymous_variant 0.21
rpsA 1834000 c.459G>C synonymous_variant 0.13
rpsA 1834009 c.468C>T synonymous_variant 0.24
rpsA 1834012 c.471G>C synonymous_variant 0.36
rpsA 1834015 c.474G>C synonymous_variant 0.26
rpsA 1834039 c.498C>T synonymous_variant 0.13
rpsA 1834040 p.Lys167Arg missense_variant 0.34
rpsA 1834046 p.Ile169Leu missense_variant 0.21
rpsA 1834051 c.510G>A synonymous_variant 0.23
rpsA 1834054 c.513C>G synonymous_variant 0.26
rpsA 1834069 c.528G>C synonymous_variant 0.14
rpsA 1834093 c.552G>C synonymous_variant 0.25
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 0.12
rpsA 1834234 c.693G>C synonymous_variant 0.23
rpsA 1834240 c.699T>C synonymous_variant 0.29
rpsA 1834249 c.708T>C synonymous_variant 0.39
rpsA 1834261 c.720A>G synonymous_variant 0.41
rpsA 1834264 c.723G>C synonymous_variant 0.4
rpsA 1834294 c.753G>C synonymous_variant 0.36
rpsA 1834298 p.Gln253Glu missense_variant 0.36
rpsA 1834306 c.765T>C synonymous_variant 0.38
rpsA 1834307 p.Asp256Gln missense_variant 0.33
rpsA 1834312 c.771G>A synonymous_variant 0.31
rpsA 1834327 c.786G>T synonymous_variant 0.31
rpsA 1834345 c.804C>T synonymous_variant 0.24
rpsA 1834348 c.807T>C synonymous_variant 0.31
rpsA 1834354 c.813G>C synonymous_variant 0.28
rpsA 1834361 c.820T>C synonymous_variant 0.29
rpsA 1834366 c.825A>C synonymous_variant 0.25
rpsA 1834375 c.834G>C synonymous_variant 0.24
rpsA 1834378 c.837T>C synonymous_variant 0.27
rpsA 1834387 c.846C>T synonymous_variant 0.22
rpsA 1834395 p.Arg285Gln missense_variant 0.14
rpsA 1834398 p.His286Pro missense_variant 0.14
rpsA 1834411 c.870T>C synonymous_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2153950 p.Val721Ala missense_variant 0.13
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168023 p.Leu864Phe missense_variant 0.12
PPE35 2169985 p.Ala210Thr missense_variant 0.17
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289239 c.3G>T start_lost 0.97
eis 2714299 p.Ala345Val missense_variant 0.14
folC 2746200 p.Val467Ile missense_variant 0.12
folC 2746467 p.Val378Met missense_variant 0.17
folC 2746665 p.Phe312Leu missense_variant 0.12
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448524 c.21C>T synonymous_variant 0.13
Rv3083 3448948 p.Tyr149Asp missense_variant 0.17
Rv3083 3449121 c.618C>T synonymous_variant 0.12
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3878609 c.-102T>A upstream_gene_variant 0.27
clpC1 4039886 c.819C>G synonymous_variant 0.18
clpC1 4039889 c.816G>C synonymous_variant 0.24
clpC1 4039898 c.807C>G synonymous_variant 0.22
clpC1 4039904 c.801A>G synonymous_variant 0.22
clpC1 4039907 c.798G>A synonymous_variant 0.23
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.19
clpC1 4039934 c.771G>A synonymous_variant 0.19
clpC1 4039937 c.768G>C synonymous_variant 0.19
clpC1 4039943 c.762G>C synonymous_variant 0.2
clpC1 4039946 c.759A>C synonymous_variant 0.2
clpC1 4039952 c.753T>C synonymous_variant 0.2
clpC1 4039958 c.747G>C synonymous_variant 0.19
clpC1 4039964 c.741C>G synonymous_variant 0.19
clpC1 4039967 p.Gln246His missense_variant 0.19
clpC1 4039982 c.723G>C synonymous_variant 0.2
clpC1 4039991 c.714G>C synonymous_variant 0.21
clpC1 4039994 p.Glu237Asp missense_variant 0.2
clpC1 4039997 c.708C>T synonymous_variant 0.2
clpC1 4040009 c.696C>T synonymous_variant 0.2
clpC1 4040015 c.690G>A synonymous_variant 0.21
clpC1 4040021 c.684A>C synonymous_variant 0.22
clpC1 4040024 c.681A>G synonymous_variant 0.22
clpC1 4040027 c.678C>G synonymous_variant 0.2
clpC1 4040033 c.672G>C synonymous_variant 0.12
embC 4241741 p.Val627Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
ubiA 4269784 c.49dupG frameshift_variant 0.12
ethA 4326676 p.Ser266Arg missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0