EBG00000313339 - n.2378G>C
Drug resistance types
111 Sensitive
21 RR-TB
94 HR-TB
28 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
138 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 81 |
| lineage2.2.1 | 28 |
| lineage4.8 | 13 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.3.3 | 6 |
| lineage4.2.1 | 3 |
| lineage4.8.1 | 1 |
| lineage4.4.2 | 1 |
| 61 | |
| lineage4.4.1.2 | 1 |
| lineage2.2 | 6 |
| lineage4.9 | 118 |
| lineage4.6.1.1 | 2 |
| La1 | 1 |
| La1.7.X-unk4 | 1 |
| La1.8.1 | 8 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 3 |
| lineage3 | 8 |
| lineage3.1.2.1 | 3 |
| lineage2.2.2 | 1 |
| lineage4.5 | 4 |
| lineage4.4.1.1 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4.3.4 | 1 |
| lineage4.3.4.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6.1.3 | 2 |
| lineage6 | 3 |
| lineage4.7 | 2 |
| lineage2.2.1.2 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2 | 1 |
| La1.4 | 1 |
| La2 | 1 |
| lineage2.2.1.1 | 3 |
| lineage3.1.3 | 2 |
| lineage1.1.1 | 4 |
| lineage4;lineage2.2 | 1 |
| lineage2.1 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.2 | 3 |
| lineage4;lineage2 | 1 |
| lineage4.1 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 401 |
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR502510 | Sensitive | lineage4 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323107 | Other | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1063857 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796597 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3283025 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283041 | Other | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3445503 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797019 | Other | La1.8.1 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797068 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR387051 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR400320 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769421 | Other | La1.2 | None | ERR4769427 | Other | La1.2 | None | ERR4769452 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798823 | HR-TB | lineage4 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4799908 | Pre-XDR-TB | lineage3 | in | ERR4799025 | Pre-XDR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR5866451 | MDR-TB | lineage2.2 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR5864556 | Pre-XDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6865502 | Sensitive | lineage4 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR5908124 | Other | lineage4.8 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736834 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR752229 | Other | lineage4.5 | None | ERR9117679 | Sensitive | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119120 | Other | lineage4.8 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9786705 | Sensitive | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | ERR9787362 | Sensitive | lineage6 | None | ERR9787336 | Other | lineage6 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173568 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR13888750 | Other | La2 | None | SRR14801749 | Sensitive | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR1791725 | Other | La1.8.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR8692807 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692868 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692759 | Other | lineage4.9 | None | SRR8692783 | Other | lineage4.9 | None | SRR8692858 | Sensitive | lineage4.9 | None | SRR8692865 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692886 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692781 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692782 | Other | lineage4.9 | None | SRR8692904 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692811 | Other | lineage4.9 | None | SRR8692775 | Other | lineage4.9 | None | SRR8692776 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692823 | Other | lineage4.9 | None | SRR8692831 | Other | lineage4.9 | None | SRR8692867 | Other | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR8692887 | Other | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR176778 | HR-TB | None | ERR4815165 | Other | lineage4.1.2.1 | None | ERR176779 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4815310 | Other | None | ERR4814639 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176651 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | ERR181887 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4817070 | Other | lineage1.1.2 | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675555 | HR-TB | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816417 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR2229760 | Other | lineage4.8 | dk | ERR2229198 | MDR-TB | lineage4.8 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4817294 | Other | lineage4.1.2 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816828 | Other | lineage1.1.1 | gb | ERR4816571 | Other | lineage1.1.2 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817948 | Other | lineage3 | gb | ERR4818831 | Other | lineage3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.1 | None | ERR4819051 | Other | lineage4 | None | ERR4819041 | Sensitive | lineage4.3.3 | gb | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818432 | HR-TB | lineage4.5 | gb | SRR5341453 | Sensitive | None | ERR4818561 | HR-TB | lineage4 | None | ERR2513273 | Other | lineage4.1.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4817628 | Sensitive | lineage4.8 | gb | SRR5341373 | HR-TB | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4 | None | ERR4819462 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341408 | Sensitive | lineage3 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341456 | Other | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | SRR5341303 | RR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341315 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | ERR4820152 | Sensitive | lineage4.6.1.2 | gb | SRR5341467 | Other | lineage4 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | ERR4821288 | Other | lineage4.7 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | ERR4821519 | Other | lineage3 | gb | ERR2693227 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045642 | Other | lineage3.1.2.2 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR5818446 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6046299 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046492 | Other | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | SRR6046376 | Other | lineage3 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6511621 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | ERR4832061 | Sensitive | lineage2.2.1 | vn | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6981999 | Sensitive | lineage2.2.1 | None | ERR4831826 | MDR-TB | lineage2.2.1 | vn | ERR4831839 | MDR-TB | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6981961 | Sensitive | lineage2.2.1 | None |
|---|
