TB-Profiler result

Run: ERR6866125
Summary

Run ID: ERR6866125

Sample name:

Date: 02-04-2023 03:16:16

Number of reads: 493774

Percentage reads mapped: 28.09

Strain: lineage4.1.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 0.99
lineage4.1.2 Euro-American T;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6269 p.Asn344Glu missense_variant 0.15
gyrB 6280 c.1041T>C synonymous_variant 0.21
gyrB 6286 c.1047T>C synonymous_variant 0.21
gyrB 6292 c.1053G>C synonymous_variant 0.21
gyrB 6295 c.1056A>G synonymous_variant 0.2
gyrB 6301 c.1062G>C synonymous_variant 0.21
gyrA 6307 c.-995T>G upstream_gene_variant 0.2
gyrB 6308 p.Val357Ile missense_variant 0.2
gyrA 6316 c.-986G>C upstream_gene_variant 0.2
gyrB 6326 p.Ser363Ala missense_variant 0.19
gyrA 6331 c.-971A>G upstream_gene_variant 0.2
gyrA 6362 c.-940_-938delTTGinsCTC upstream_gene_variant 0.19
gyrA 6382 c.-920A>G upstream_gene_variant 0.18
gyrA 6388 c.-914T>C upstream_gene_variant 0.18
gyrB 6399 p.Val387Ala missense_variant 0.2
gyrA 6403 c.-899T>C upstream_gene_variant 0.14
gyrA 6649 c.-653T>C upstream_gene_variant 0.25
gyrA 6655 c.-647T>C upstream_gene_variant 0.5
gyrB 6663 p.Phe475Tyr missense_variant 0.46
gyrA 6673 c.-629A>C upstream_gene_variant 0.5
gyrA 6676 c.-626T>G upstream_gene_variant 0.46
gyrA 6700 c.-602T>C upstream_gene_variant 0.59
gyrA 6703 c.-599G>C upstream_gene_variant 0.61
gyrA 6709 c.-593A>G upstream_gene_variant 0.61
gyrA 6712 c.-590G>C upstream_gene_variant 0.61
gyrA 6724 c.-578G>C upstream_gene_variant 0.61
gyrA 6727 c.-575G>C upstream_gene_variant 0.61
gyrA 6730 c.-572A>C upstream_gene_variant 0.61
gyrB 6737 p.Thr500Ala missense_variant 0.58
gyrA 6742 c.-560A>G upstream_gene_variant 0.55
gyrA 6745 c.-557T>C upstream_gene_variant 0.52
gyrB 6749 p.Ala504Ser missense_variant 0.5
gyrA 6760 c.-542G>C upstream_gene_variant 0.48
gyrB 6764 p.Leu509Phe missense_variant 0.48
gyrA 6775 c.-527G>C upstream_gene_variant 0.48
gyrA 6793 c.-509T>C upstream_gene_variant 0.48
gyrB 6797 p.Gly520Ser missense_variant 0.47
gyrA 6811 c.-491C>T upstream_gene_variant 0.33
gyrA 6841 c.-461T>C upstream_gene_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7547 c.246C>T synonymous_variant 0.22
gyrA 7569 p.Ala90Ser missense_variant 0.29
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491386 p.Leu202Ile missense_variant 0.25
fgd1 491590 p.Lys270Val missense_variant 0.23
fgd1 491604 c.822G>C synonymous_variant 0.23
fgd1 491610 c.828A>G synonymous_variant 0.27
fgd1 491616 c.834A>G synonymous_variant 0.27
fgd1 491620 p.Ile280Val missense_variant 0.25
fgd1 491631 c.849C>G synonymous_variant 0.25
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 760101 c.295T>C synonymous_variant 0.24
rpoB 760106 c.300G>C synonymous_variant 0.24
rpoB 760112 c.306T>G synonymous_variant 0.25
rpoB 760115 c.309C>T synonymous_variant 0.71
rpoB 760118 c.312T>G synonymous_variant 0.29
rpoB 760121 c.315T>C synonymous_variant 0.27
rpoB 760130 p.Asp108Glu missense_variant 0.27
rpoB 760133 c.327C>G synonymous_variant 0.27
rpoB 760139 c.333A>C synonymous_variant 0.24
rpoB 760140 p.Pro112Ser missense_variant 0.24
rpoB 760172 c.366G>C synonymous_variant 0.32
rpoB 760181 c.375T>G synonymous_variant 0.35
rpoB 760184 c.378A>G synonymous_variant 0.32
rpoB 760185 c.379C>T synonymous_variant 0.32
rpoB 760199 c.393C>G synonymous_variant 0.3
rpoB 760235 c.429T>C synonymous_variant 0.21
rpoB 760256 c.450C>T synonymous_variant 0.2
rpoB 760274 p.Glu156Asp missense_variant 0.31
rpoB 760283 c.477G>A synonymous_variant 0.33
rpoB 760298 c.492G>C synonymous_variant 0.44
rpoB 760310 c.504G>C synonymous_variant 0.43
rpoB 760313 c.507G>C synonymous_variant 0.43
rpoB 760316 c.510C>G synonymous_variant 0.43
rpoB 760317 c.511_513delAGCinsTCG synonymous_variant 0.43
rpoB 760328 c.522G>C synonymous_variant 0.45
rpoB 760331 c.525G>T synonymous_variant 0.45
rpoB 760337 c.531C>G synonymous_variant 0.44
rpoB 760340 c.534G>C synonymous_variant 0.46
rpoB 760356 p.Thr184Ser missense_variant 0.54
rpoB 760361 c.555T>C synonymous_variant 0.52
rpoB 760368 c.562_563delTCinsAG synonymous_variant 0.56
rpoB 760376 p.Asp190Glu missense_variant 0.6
rpoB 760382 c.576G>C synonymous_variant 0.65
rpoB 760400 c.594G>C synonymous_variant 0.67
rpoB 760407 p.Ser201Gly missense_variant 0.6
rpoB 760412 c.606C>T synonymous_variant 0.6
rpoB 760430 c.624T>C synonymous_variant 0.5
rpoB 760457 c.651C>T synonymous_variant 0.32
rpoB 760460 c.654G>C synonymous_variant 0.3
rpoB 760475 c.669A>G synonymous_variant 0.23
rpoB 760481 c.675G>C synonymous_variant 0.23
rpoB 760484 c.678A>G synonymous_variant 0.19
rpoB 760880 c.1074G>C synonymous_variant 0.18
rpoB 760883 c.1077G>C synonymous_variant 0.2
rpoB 760886 c.1080A>G synonymous_variant 0.2
rpoB 760887 p.Thr361Val missense_variant 0.2
rpoB 760916 c.1110C>T synonymous_variant 0.39
rpoB 760919 c.1113C>T synonymous_variant 0.39
rpoB 760925 c.1119T>C synonymous_variant 0.37
rpoB 760931 c.1125C>G synonymous_variant 0.4
rpoB 760940 c.1134G>C synonymous_variant 0.45
rpoB 760946 c.1140A>G synonymous_variant 0.46
rpoB 760958 c.1152G>C synonymous_variant 0.52
rpoB 760961 c.1155C>G synonymous_variant 0.52
rpoB 760965 p.Met387Leu missense_variant 0.52
rpoB 760970 c.1164G>C synonymous_variant 0.52
rpoB 760973 c.1167G>C synonymous_variant 0.54
rpoB 760982 c.1176G>C synonymous_variant 0.62
rpoB 760985 c.1179G>C synonymous_variant 0.62
rpoB 760991 c.1185G>C synonymous_variant 0.69
rpoB 760997 c.1191G>C synonymous_variant 0.68
rpoB 761003 c.1197C>G synonymous_variant 0.62
rpoB 761006 c.1200C>T synonymous_variant 0.62
rpoB 761015 c.1209G>C synonymous_variant 0.64
rpoB 761027 c.1221A>G synonymous_variant 0.66
rpoB 761036 c.1230G>C synonymous_variant 0.62
rpoB 761037 c.1231T>C synonymous_variant 0.62
rpoB 761051 c.1245G>C synonymous_variant 0.63
rpoB 761057 c.1251G>C synonymous_variant 0.63
rpoB 761084 c.1278C>A synonymous_variant 0.59
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.58
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.58
rpoB 761102 c.1296A>G synonymous_variant 0.61
rpoB 761132 c.1326G>C synonymous_variant 0.57
rpoB 761133 c.1327T>C synonymous_variant 0.57
rpoB 761147 c.1341C>T synonymous_variant 0.59
rpoB 761150 c.1344A>C synonymous_variant 0.65
rpoB 761165 c.1359G>C synonymous_variant 0.62
rpoB 761180 c.1374A>C synonymous_variant 0.62
rpoB 761189 c.1383T>C synonymous_variant 0.63
rpoB 761195 c.1389G>C synonymous_variant 0.65
rpoB 761198 c.1392G>C synonymous_variant 0.66
rpoB 761213 c.1407G>C synonymous_variant 0.69
rpoB 761234 c.1428G>T synonymous_variant 0.67
rpoB 761249 c.1443A>G synonymous_variant 0.65
rpoB 761255 c.1449T>C synonymous_variant 0.64
rpoB 761261 c.1455G>T synonymous_variant 0.61
rpoB 761264 c.1458C>G synonymous_variant 0.62
rpoB 761274 c.1468C>T synonymous_variant 0.59
rpoB 761282 c.1476C>T synonymous_variant 0.58
rpoB 761288 c.1482G>C synonymous_variant 0.59
rpoB 761300 c.1494G>A synonymous_variant 0.48
rpoB 761318 c.1512G>T synonymous_variant 0.36
rpoB 761327 c.1521A>G synonymous_variant 0.33
rpoB 761330 c.1524G>C synonymous_variant 0.32
rpoB 761345 c.1539G>C synonymous_variant 0.27
rpoB 761347 p.Val514Glu missense_variant 0.27
rpoB 761349 p.Asp515Asn missense_variant 0.27
rpoB 761355 p.Val517Gln missense_variant 0.29
rpoB 761360 c.1554T>C synonymous_variant 0.27
rpoB 761362 p.Ser519Thr missense_variant 0.27
rpoB 761367 p.Glu521Gln missense_variant 0.26
rpoB 761370 p.Ile522Val missense_variant 0.27
rpoB 761374 p.Val523Asp missense_variant 0.25
rpoB 761387 c.1581C>G synonymous_variant 0.26
rpoB 761408 c.1602G>C synonymous_variant 0.26
rpoB 761414 c.1608A>G synonymous_variant 0.24
rpoB 761537 c.1731C>G synonymous_variant 0.35
rpoB 761540 c.1734C>T synonymous_variant 0.33
rpoB 761549 c.1743G>C synonymous_variant 0.4
rpoB 761555 c.1749G>C synonymous_variant 0.48
rpoB 761558 c.1752C>G synonymous_variant 0.48
rpoB 761573 c.1767C>G synonymous_variant 0.45
rpoB 761579 c.1773G>C synonymous_variant 0.45
rpoB 761612 c.1806G>T synonymous_variant 0.44
rpoB 761615 c.1809A>G synonymous_variant 0.44
rpoB 761627 c.1821C>T synonymous_variant 0.43
rpoB 761636 c.1830G>T synonymous_variant 0.43
rpoB 761645 c.1839C>G synonymous_variant 0.43
rpoB 761648 c.1842T>C synonymous_variant 0.43
rpoB 761655 p.Ala617Ser missense_variant 0.43
rpoB 761666 c.1860G>C synonymous_variant 0.37
rpoB 761669 c.1863C>T synonymous_variant 0.33
rpoB 761675 c.1869G>T synonymous_variant 0.32
rpoB 761690 c.1884G>C synonymous_variant 0.21
rpoB 761694 p.Ile630Val missense_variant 0.2
rpoB 761933 c.2127G>C synonymous_variant 0.23
rpoB 761948 c.2142G>C synonymous_variant 0.36
rpoB 761954 c.2148C>G synonymous_variant 0.43
rpoB 761996 c.2190C>T synonymous_variant 0.67
rpoB 762002 c.2196C>G synonymous_variant 0.64
rpoB 762003 p.Asn733Gln missense_variant 0.64
rpoB 762011 c.2205G>C synonymous_variant 0.64
rpoB 762014 c.2208C>G synonymous_variant 0.67
rpoB 762017 c.2211A>G synonymous_variant 0.67
rpoB 762026 c.2220G>C synonymous_variant 0.67
rpoB 762053 c.2247T>C synonymous_variant 0.71
rpoB 762062 c.2256T>C synonymous_variant 0.72
rpoB 762065 c.2259T>C synonymous_variant 0.72
rpoB 762080 c.2274G>C synonymous_variant 0.77
rpoB 762086 c.2280G>C synonymous_variant 0.75
rpoB 762101 c.2295C>G synonymous_variant 0.68
rpoB 762114 p.Ile770Val missense_variant 0.71
rpoB 762128 c.2322G>C synonymous_variant 0.67
rpoB 762137 c.2331C>T synonymous_variant 0.66
rpoB 762140 c.2334G>C synonymous_variant 0.66
rpoB 762143 c.2337T>C synonymous_variant 0.68
rpoB 762149 c.2343G>C synonymous_variant 0.68
rpoB 762156 p.Val784Ile missense_variant 0.61
rpoB 762161 c.2355C>T synonymous_variant 0.66
rpoB 762176 c.2370T>C synonymous_variant 0.62
rpoB 762185 c.2379G>C synonymous_variant 0.59
rpoB 762189 p.Ile795Val missense_variant 0.64
rpoB 762218 c.2412T>C synonymous_variant 0.62
rpoB 762233 c.2427G>C synonymous_variant 0.59
rpoB 762245 c.2439G>C synonymous_variant 0.56
rpoB 762254 c.2448T>C synonymous_variant 0.5
rpoB 762257 c.2451C>G synonymous_variant 0.49
rpoB 762266 c.2460T>C synonymous_variant 0.47
rpoB 762284 c.2478G>C synonymous_variant 0.45
rpoB 762293 c.2487T>G synonymous_variant 0.43
rpoB 762299 c.2493G>C synonymous_variant 0.43
rpoB 762308 c.2502G>C synonymous_variant 0.46
rpoB 762314 c.2508C>T synonymous_variant 0.44
rpoB 762317 c.2511A>G synonymous_variant 0.42
rpoB 762329 c.2523G>C synonymous_variant 0.37
rpoB 762335 c.2529C>T synonymous_variant 0.35
rpoB 762338 c.2532T>C synonymous_variant 0.21
rpoC 762800 c.-570C>G upstream_gene_variant 0.14
rpoC 762812 c.-558C>G upstream_gene_variant 0.33
rpoB 762814 p.Met1003Thr missense_variant 0.32
rpoC 762818 c.-552C>G upstream_gene_variant 0.32
rpoC 762827 c.-543G>T upstream_gene_variant 0.35
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 0.35
rpoC 762857 c.-513C>G upstream_gene_variant 0.61
rpoB 762858 p.Thr1018Ser missense_variant 0.61
rpoC 762863 c.-507T>C upstream_gene_variant 0.58
rpoB 762881 p.Met1025Ile missense_variant 0.68
rpoC 762899 c.-471G>C upstream_gene_variant 0.75
rpoC 762917 c.-453C>G upstream_gene_variant 0.79
rpoC 762920 c.-450C>T upstream_gene_variant 0.79
rpoC 762923 c.-447C>G upstream_gene_variant 0.8
rpoC 762929 c.-441G>C upstream_gene_variant 0.79
rpoC 762959 c.-411G>C upstream_gene_variant 0.76
rpoC 762971 c.-399G>C upstream_gene_variant 0.73
rpoC 762989 c.-381G>C upstream_gene_variant 0.75
rpoC 762995 c.-375G>T upstream_gene_variant 0.74
rpoC 763013 c.-357C>G upstream_gene_variant 0.68
rpoC 763022 c.-348C>G upstream_gene_variant 0.63
rpoC 763028 c.-342T>C upstream_gene_variant 0.61
rpoC 763031 c.-339T>C upstream_gene_variant 0.61
rpoC 763053 c.-317T>C upstream_gene_variant 0.62
rpoC 763067 c.-303C>G upstream_gene_variant 0.57
rpoC 763070 c.-300T>C upstream_gene_variant 0.59
rpoB 763074 p.Thr1090Val missense_variant 0.62
rpoC 763088 c.-282C>G upstream_gene_variant 0.62
rpoC 763103 c.-267G>C upstream_gene_variant 0.62
rpoC 763115 c.-255T>C upstream_gene_variant 0.63
rpoC 763127 c.-243G>C upstream_gene_variant 0.52
rpoC 763148 c.-222G>C upstream_gene_variant 0.39
rpoC 763160 c.-210G>C upstream_gene_variant 0.37
rpoC 763166 c.-204A>G upstream_gene_variant 0.28
rpoC 763169 c.-201A>G upstream_gene_variant 0.26
rpoC 763172 c.-198G>C upstream_gene_variant 0.28
rpoC 763193 c.-177C>G upstream_gene_variant 0.13
rpoC 763411 c.42T>C synonymous_variant 0.33
rpoC 763414 c.45T>G synonymous_variant 0.33
rpoC 763430 c.61_63delAGGinsCGC synonymous_variant 0.37
rpoC 763433 p.Gln22Asn missense_variant 0.38
rpoC 763444 c.75T>C synonymous_variant 0.5
rpoC 763456 c.87A>G synonymous_variant 0.59
rpoC 763468 c.99G>C synonymous_variant 0.63
rpoC 763486 c.117T>C synonymous_variant 0.7
rpoC 763492 c.123G>C synonymous_variant 0.71
rpoC 763507 c.138G>C synonymous_variant 0.77
rpoC 763528 c.159G>C synonymous_variant 0.76
rpoC 763531 c.162G>C synonymous_variant 0.75
rpoC 763534 c.165T>C synonymous_variant 0.73
rpoC 763537 c.168C>G synonymous_variant 0.76
rpoC 763546 c.177A>G synonymous_variant 0.77
rpoC 763558 c.189C>T synonymous_variant 0.74
rpoC 763570 c.201G>C synonymous_variant 0.74
rpoC 763573 c.204G>C synonymous_variant 0.74
rpoC 763624 c.255C>G synonymous_variant 0.58
rpoC 763642 c.273G>C synonymous_variant 0.5
rpoC 763660 c.291T>C synonymous_variant 0.43
rpoC 763666 c.297G>T synonymous_variant 0.45
rpoC 763669 c.300C>G synonymous_variant 0.42
rpoC 763702 c.333C>G synonymous_variant 0.32
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.32
rpoC 763708 c.339G>T synonymous_variant 0.33
rpoC 763711 c.342G>C synonymous_variant 0.32
rpoC 763714 c.345G>C synonymous_variant 0.32
rpoC 763717 c.348T>C synonymous_variant 0.3
rpoC 763732 c.363C>T synonymous_variant 0.3
rpoC 763741 c.372C>T synonymous_variant 0.29
rpoC 763744 c.375G>C synonymous_variant 0.3
rpoC 763774 c.405G>C synonymous_variant 0.22
rpoC 763776 c.409_410delAC frameshift_variant 0.19
rpoC 763780 c.411C>G synonymous_variant 0.19
rpoC 763783 c.415_416dupGT frameshift_variant 0.19
rpoC 763796 p.Met143Leu missense_variant 0.26
rpoC 763801 c.432C>T synonymous_variant 0.26
rpoC 763807 c.438T>C synonymous_variant 0.26
rpoC 763987 c.618C>T synonymous_variant 0.17
rpoC 763991 p.Ile208Leu missense_variant 0.15
rpoC 764002 c.633C>T synonymous_variant 0.14
rpoC 764011 c.642T>C synonymous_variant 0.14
rpoC 764020 c.651C>T synonymous_variant 0.15
rpoC 764023 c.654G>T synonymous_variant 0.15
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.15
rpoC 764029 p.Glu220Asp missense_variant 0.17
rpoC 764032 p.Asp221Glu missense_variant 0.17
rpoC 764040 p.Ser224Thr missense_variant 0.15
rpoC 764044 c.675T>G synonymous_variant 0.15
rpoC 764083 c.714A>G synonymous_variant 0.15
rpoC 764098 c.729A>G synonymous_variant 0.25
rpoC 764149 c.780G>C synonymous_variant 0.18
rpoC 764157 p.Lys263Ile missense_variant 0.18
rpoC 764161 c.792G>C synonymous_variant 0.19
rpoC 764164 p.Ile265Met missense_variant 0.2
rpoC 764165 p.Glu266Arg missense_variant 0.2
rpoC 764182 p.Asp271Glu missense_variant 0.3
rpoC 764188 c.819A>G synonymous_variant 0.3
rpoC 764203 c.834G>C synonymous_variant 0.37
rpoC 764206 p.Asp279Glu missense_variant 0.39
rpoC 764207 p.Val280Thr missense_variant 0.39
rpoC 764215 c.846A>C synonymous_variant 0.44
rpoC 764217 p.Asn283Ser missense_variant 0.42
rpoC 764227 c.858G>T synonymous_variant 0.45
rpoC 764239 c.870T>G synonymous_variant 0.54
rpoC 764242 c.873C>T synonymous_variant 0.5
rpoC 764245 c.876C>G synonymous_variant 0.5
rpoC 764254 c.885G>C synonymous_variant 0.57
rpoC 764257 c.888G>C synonymous_variant 0.57
rpoC 764263 c.894G>C synonymous_variant 0.54
rpoC 764266 c.897T>C synonymous_variant 0.58
rpoC 764278 c.909A>G synonymous_variant 0.62
rpoC 764296 c.927G>C synonymous_variant 0.66
rpoC 764308 c.939G>T synonymous_variant 0.66
rpoC 764320 c.951C>T synonymous_variant 0.61
rpoC 764353 c.984G>C synonymous_variant 0.67
rpoC 764365 c.996C>T synonymous_variant 0.66
rpoC 764368 c.999C>T synonymous_variant 0.68
rpoC 764371 c.1002G>T synonymous_variant 0.67
rpoC 764377 c.1008C>G synonymous_variant 0.66
rpoC 764387 c.1018T>C synonymous_variant 0.63
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.56
rpoC 764410 c.1041G>C synonymous_variant 0.58
rpoC 764428 c.1059G>C synonymous_variant 0.58
rpoC 764431 c.1062G>C synonymous_variant 0.56
rpoC 764434 c.1065A>G synonymous_variant 0.54
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.54
rpoC 764449 c.1080G>C synonymous_variant 0.54
rpoC 764452 c.1083T>C synonymous_variant 0.56
rpoC 764455 c.1086G>T synonymous_variant 0.58
rpoC 764458 c.1089G>C synonymous_variant 0.58
rpoC 764461 c.1092A>G synonymous_variant 0.58
rpoC 764497 c.1128A>G synonymous_variant 0.65
rpoC 764506 c.1137C>T synonymous_variant 0.65
rpoC 764521 c.1152T>C synonymous_variant 0.57
rpoC 764524 c.1155C>T synonymous_variant 0.6
rpoC 764527 c.1158C>T synonymous_variant 0.6
rpoC 764530 c.1161C>T synonymous_variant 0.6
rpoC 764545 c.1176C>G synonymous_variant 0.67
rpoC 764548 c.1179G>T synonymous_variant 0.7
rpoC 764566 c.1197C>G synonymous_variant 0.64
rpoC 764575 c.1206T>G synonymous_variant 0.65
rpoC 764605 c.1236G>C synonymous_variant 0.78
rpoC 764611 c.1242G>T synonymous_variant 0.79
rpoC 764632 c.1263T>C synonymous_variant 0.78
rpoC 764650 c.1281G>T synonymous_variant 0.79
rpoC 764701 c.1332C>G synonymous_variant 0.72
rpoC 764707 c.1338G>C synonymous_variant 0.71
rpoC 764716 c.1347G>C synonymous_variant 0.7
rpoC 764719 c.1350G>A synonymous_variant 0.7
rpoC 764746 c.1377G>T synonymous_variant 0.61
rpoC 764752 c.1383G>C synonymous_variant 0.58
rpoC 764764 c.1395T>C synonymous_variant 0.53
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.54
rpoC 764785 c.1416C>G synonymous_variant 0.56
rpoC 764797 c.1428G>C synonymous_variant 0.5
rpoC 764803 c.1434C>T synonymous_variant 0.48
rpoC 764809 c.1440C>T synonymous_variant 0.48
rpoC 764812 c.1443C>G synonymous_variant 0.45
rpoC 764815 c.1446A>G synonymous_variant 0.39
rpoC 764824 c.1455T>C synonymous_variant 0.38
rpoC 764827 c.1458G>C synonymous_variant 0.39
rpoC 764843 p.Ala492Asn missense_variant 0.35
rpoC 764858 c.1489T>C synonymous_variant 0.39
rpoC 764869 c.1500C>T synonymous_variant 0.38
rpoC 764875 c.1506C>T synonymous_variant 0.43
rpoC 764878 c.1509C>G synonymous_variant 0.38
rpoC 764887 c.1518G>C synonymous_variant 0.29
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.29
rpoC 764893 c.1524T>C synonymous_variant 0.27
rpoC 764923 c.1554A>G synonymous_variant 0.15
rpoC 764935 c.1566T>C synonymous_variant 0.26
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.33
rpoC 764968 c.1599T>C synonymous_variant 0.32
rpoC 764995 c.1626C>A synonymous_variant 0.35
rpoC 765007 c.1638T>G synonymous_variant 0.33
rpoC 765008 c.1639T>C synonymous_variant 0.35
rpoC 765011 c.1642_1644delAGCinsTCG synonymous_variant 0.35
rpoC 765016 c.1647C>G synonymous_variant 0.37
rpoC 765019 c.1650A>G synonymous_variant 0.37
rpoC 765034 c.1665T>C synonymous_variant 0.35
rpoC 765040 c.1671T>C synonymous_variant 0.33
rpoC 765041 c.1672T>C synonymous_variant 0.33
rpoC 765047 c.1678T>C synonymous_variant 0.33
rpoC 765052 c.1683C>G synonymous_variant 0.33
rpoC 765055 c.1686C>G synonymous_variant 0.32
rpoC 765076 c.1707A>G synonymous_variant 0.2
rpoC 765079 c.1710T>G synonymous_variant 0.2
rpoC 765082 c.1713G>T synonymous_variant 0.2
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 765871 c.2502T>G synonymous_variant 0.26
rpoC 765875 p.Val836Ile missense_variant 0.26
rpoC 765883 c.2514C>T synonymous_variant 0.28
rpoC 765890 p.Arg841Lys missense_variant 0.25
rpoC 765904 c.2535C>G synonymous_variant 0.27
rpoC 765907 c.2538G>T synonymous_variant 0.29
rpoC 765910 c.2541G>C synonymous_variant 0.31
rpoC 765928 c.2559C>G synonymous_variant 0.25
rpoC 765934 c.2565C>T synonymous_variant 0.25
rpoC 765940 c.2571A>T synonymous_variant 0.24
rpoC 765946 c.2577C>T synonymous_variant 0.24
rpoC 765947 c.2578T>C synonymous_variant 0.24
rpoC 765952 c.2583G>C synonymous_variant 0.24
rpoC 765955 c.2586C>T synonymous_variant 0.25
rpoC 765961 c.2592G>T synonymous_variant 0.24
rpoC 765962 c.2593T>C synonymous_variant 0.24
rpoC 765967 c.2598C>T synonymous_variant 0.25
rpoC 765979 c.2610C>G synonymous_variant 0.25
rpoC 765982 c.2613C>T synonymous_variant 0.25
rpoC 765994 c.2625A>T synonymous_variant 0.21
rpoC 766345 c.2976T>C synonymous_variant 0.3
rpoC 766348 c.2979A>G synonymous_variant 0.3
rpoC 766357 c.2988C>T synonymous_variant 0.3
rpoC 766363 c.2994G>C synonymous_variant 0.3
rpoC 766369 c.3000C>G synonymous_variant 0.33
rpoC 766375 c.3006C>G synonymous_variant 0.3
rpoC 766381 c.3012C>T synonymous_variant 0.27
rpoC 766384 c.3015A>G synonymous_variant 0.27
rpoC 766390 c.3021C>T synonymous_variant 0.27
rpoC 766402 c.3033C>G synonymous_variant 0.21
rpoC 766408 c.3039C>T synonymous_variant 0.19
rpoC 766425 c.3056_3057insTGCGGC disruptive_inframe_insertion 0.2
rpoC 766428 p.Val1020Gly missense_variant 0.2
rpoC 766431 p.Gly1021Ala missense_variant 0.18
rpoC 766434 p.Glu1022Ala missense_variant 0.18
rpoC 766456 c.3087C>G synonymous_variant 0.18
rpoC 766459 c.3090G>T synonymous_variant 0.18
rpoC 766462 c.3093G>C synonymous_variant 0.18
rpoC 766792 c.3423C>G synonymous_variant 0.2
rpoC 766798 c.3429C>G synonymous_variant 0.2
rpoC 766799 p.Ala1144Ser missense_variant 0.2
rpoC 766804 c.3435A>G synonymous_variant 0.19
rpoC 766837 c.3468G>C synonymous_variant 0.2
rpoC 766843 c.3474T>G synonymous_variant 0.21
rpoC 766858 c.3489C>T synonymous_variant 0.2
rpoC 766861 c.3492G>C synonymous_variant 0.19
rpoC 766864 c.3495G>C synonymous_variant 0.19
rpoC 766867 c.3498C>G synonymous_variant 0.18
rpoC 766876 c.3507C>T synonymous_variant 0.25
rpoC 766882 c.3513C>T synonymous_variant 0.28
rpoC 766894 c.3525T>C synonymous_variant 0.33
rpoC 766895 c.3526T>C synonymous_variant 0.33
rpoC 766900 c.3531T>C synonymous_variant 0.33
rpoC 766910 p.Ile1181Val missense_variant 0.3
rpoC 766915 p.Asp1182Glu missense_variant 0.32
rpoC 766918 c.3549C>T synonymous_variant 0.32
rpoC 766933 c.3564A>G synonymous_variant 0.18
rpoC 766934 p.Glu1189Ser missense_variant 0.18
rpoC 766942 c.3573C>T synonymous_variant 0.17
rpoC 766945 c.3576A>C synonymous_variant 0.17
rpoC 766948 c.3579G>C synonymous_variant 0.17
rpoC 766951 c.3582G>C synonymous_variant 0.19
rpoC 766960 c.3591C>T synonymous_variant 0.18
rpoC 766963 c.3594T>C synonymous_variant 0.18
rpoC 766969 c.3600C>T synonymous_variant 0.24
rpoC 766978 c.3609C>A synonymous_variant 0.33
rpoC 766996 c.3627C>T synonymous_variant 0.43
rpoC 767017 c.3648C>G synonymous_variant 0.53
rpoC 767062 c.3693C>A synonymous_variant 0.63
rpoC 767074 c.3705T>C synonymous_variant 0.62
rpoC 767093 c.3724_3726delAGCinsTCG synonymous_variant 0.56
rpoC 767098 c.3729T>C synonymous_variant 0.56
rpoC 767104 c.3735C>G synonymous_variant 0.56
rpoC 767106 p.Asn1246Ile missense_variant 0.58
rpoC 767113 c.3744G>C synonymous_variant 0.62
rpoC 767119 c.3750A>G synonymous_variant 0.6
rpoC 767152 c.3783T>C synonymous_variant 0.59
rpoC 767158 c.3789T>C synonymous_variant 0.59
rpoC 767167 c.3798C>G synonymous_variant 0.53
rpoC 767173 c.3804C>G synonymous_variant 0.5
rpoC 767180 p.Ala1271Gln missense_variant 0.47
rpoC 767185 c.3816G>T synonymous_variant 0.47
rpoC 767203 c.3834C>T synonymous_variant 0.36
rpoC 767209 c.3840T>G synonymous_variant 0.33
rpoC 767212 c.3843G>T synonymous_variant 0.31
rpoC 767219 p.Thr1284Ala missense_variant 0.31
rpoC 767222 p.Ile1285Val missense_variant 0.29
rpoC 767230 c.3861G>C synonymous_variant 0.33
rpoC 767233 c.3864T>C synonymous_variant 0.33
rpoC 767236 p.Glu1289Asp missense_variant 0.33
rpoC 767239 c.3870T>C synonymous_variant 0.33
rpoC 767256 c.3887_3888insGGG disruptive_inframe_insertion 0.25
rpoC 767263 c.3894T>C synonymous_variant 0.25
rpoC 767264 p.Ala1299Thr missense_variant 0.25
rpoC 767268 p.Ala1300Gly missense_variant 0.25
rpoC 767281 c.3912C>G synonymous_variant 0.25
rpoC 767284 c.3915C>T synonymous_variant 0.25
rpoC 767304 p.Tyr1312Phe missense_variant 0.25
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781559 c.-1G>C upstream_gene_variant 0.33
rpsL 781572 p.Gln5Asn missense_variant 0.29
rpsL 781592 c.33T>C synonymous_variant 0.29
rpsL 781595 c.36T>C synonymous_variant 0.29
rpsL 781598 c.39G>C synonymous_variant 0.29
rpsL 781605 p.Ile16Ala missense_variant 0.28
rpsL 781608 p.Ser17Ala missense_variant 0.28
rpsL 781628 c.69T>C synonymous_variant 0.35
rpsL 781655 c.96T>C synonymous_variant 0.44
rpsL 781658 c.99A>G synonymous_variant 0.44
rpsL 781664 c.105C>T synonymous_variant 0.47
rpsL 781682 c.123T>C synonymous_variant 0.56
rpsL 781700 c.141G>C synonymous_variant 0.5
rpsL 781706 c.147T>G synonymous_variant 0.36
rpsL 781715 c.156T>C synonymous_variant 0.36
rpsL 781721 c.162C>T synonymous_variant 0.4
rpsL 781725 p.Lys56Arg missense_variant 0.4
rpsL 781728 c.169T>C synonymous_variant 0.4
rpsL 781732 c.174_177delGAGT frameshift_variant 0.4
rpsL 781739 c.180_181insCTCT frameshift_variant 0.33
rpsL 781751 c.192G>C synonymous_variant 0.36
rpsL 781754 c.195G>T synonymous_variant 0.31
rpsL 781760 c.201T>C synonymous_variant 0.33
rpsL 781763 c.204C>G synonymous_variant 0.31
rpsL 781766 c.207C>T synonymous_variant 0.31
rpsL 781802 c.243G>C synonymous_variant 0.5
rpsL 781805 c.246G>C synonymous_variant 0.48
rpsL 781814 c.255C>T synonymous_variant 0.45
rpsL 781817 c.258G>T synonymous_variant 0.45
rpsL 781829 c.270G>T synonymous_variant 0.43
rpsL 781832 c.273T>G synonymous_variant 0.43
rpsL 781856 c.297C>T synonymous_variant 0.5
rpsL 781859 c.300T>C synonymous_variant 0.5
rpsL 781868 c.309T>C synonymous_variant 0.46
rpsL 781871 c.312G>C synonymous_variant 0.46
rpsL 781892 c.333A>G synonymous_variant 0.45
rpsL 781898 c.339A>G synonymous_variant 0.47
rpsL 781901 c.342C>T synonymous_variant 0.44
rpsL 781907 c.348T>C synonymous_variant 0.44
rpsL 781916 c.357T>G synonymous_variant 0.44
rplC 800610 c.-199_-197delCTAinsTTG upstream_gene_variant 0.18
rplC 800615 c.-194G>T upstream_gene_variant 0.22
rplC 800618 c.-191T>C upstream_gene_variant 0.22
rplC 800633 c.-176T>C upstream_gene_variant 0.3
rplC 800648 c.-161A>G upstream_gene_variant 0.26
rplC 800654 c.-155T>C upstream_gene_variant 0.22
rplC 800672 c.-137G>C upstream_gene_variant 0.24
rplC 800690 c.-119C>T upstream_gene_variant 0.28
rplC 800693 c.-116A>T upstream_gene_variant 0.26
rplC 800703 c.-106T>C upstream_gene_variant 0.28
rplC 800715 c.-94A>C upstream_gene_variant 0.25
rplC 800720 c.-89T>C upstream_gene_variant 0.26
rplC 800723 c.-86C>G upstream_gene_variant 0.29
rplC 800735 c.-74C>G upstream_gene_variant 0.29
rplC 800738 c.-71T>C upstream_gene_variant 0.32
rplC 800780 c.-29C>G upstream_gene_variant 0.25
fbiC 1303515 c.585G>C synonymous_variant 0.2
fbiC 1303525 p.Ser199Glu missense_variant 0.18
fbiC 1303533 p.Met201Ile missense_variant 0.18
fbiC 1303539 c.609G>A synonymous_variant 0.18
fbiC 1303545 c.615A>G synonymous_variant 0.18
fbiC 1303926 c.996G>A synonymous_variant 0.14
fbiC 1303927 p.Ala333Ser missense_variant 0.14
fbiC 1303932 c.1002G>A synonymous_variant 0.14
fbiC 1303956 c.1026A>G synonymous_variant 0.16
fbiC 1303969 p.Val347Ile missense_variant 0.18
fbiC 1303974 c.1044C>T synonymous_variant 0.17
fbiC 1303977 c.1047C>G synonymous_variant 0.17
fbiC 1303980 c.1050G>C synonymous_variant 0.17
fbiC 1304004 c.1074A>G synonymous_variant 0.16
fbiC 1304019 c.1089C>T synonymous_variant 0.18
fbiC 1304022 c.1092T>C synonymous_variant 0.18
fbiC 1304028 c.1098C>T synonymous_variant 0.18
fbiC 1304040 c.1110C>G synonymous_variant 0.14
fbiC 1304613 c.1683T>C synonymous_variant 0.29
fbiC 1304628 c.1698G>C synonymous_variant 0.28
fbiC 1304634 c.1704C>G synonymous_variant 0.24
fbiC 1304640 c.1710A>C synonymous_variant 0.25
fbiC 1304646 c.1716T>C synonymous_variant 0.25
fbiC 1304649 c.1719C>T synonymous_variant 0.24
fbiC 1304658 c.1728C>G synonymous_variant 0.22
fbiC 1304660 p.Tyr577Phe missense_variant 0.22
fbiC 1304662 p.Ser578Thr missense_variant 0.22
fbiC 1304670 c.1740G>C synonymous_variant 0.23
fbiC 1304671 c.1742delT frameshift_variant 0.24
fbiC 1304676 c.1747dupG frameshift_variant 0.24
fbiC 1304682 c.1752C>G synonymous_variant 0.24
fbiC 1304694 c.1764A>G synonymous_variant 0.25
fbiC 1304703 c.1773C>G synonymous_variant 0.26
fbiC 1304712 c.1782C>G synonymous_variant 0.26
fbiC 1304715 c.1785G>A synonymous_variant 0.28
fbiC 1304724 c.1794A>G synonymous_variant 0.27
fbiC 1304727 c.1797A>C synonymous_variant 0.27
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.52
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.52
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.54
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.56
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.58
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.56
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.68
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.68
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.2
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.5
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.5
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.85
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.92
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.92
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.92
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.92
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.92
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.92
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.92
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.91
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.91
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.93
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.91
rrs 1472312 n.467_468insA non_coding_transcript_exon_variant 0.91
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.91
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.91
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.91
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.91
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.89
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.88
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.88
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.9
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.9
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.9
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.9
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.9
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.9
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.9
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.9
rrs 1472463 n.618G>A non_coding_transcript_exon_variant 0.9
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.9
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.91
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.88
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.92
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.94
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.94
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.95
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.95
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.92
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.92
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.83
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.79
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.79
rrs 1472858 n.1013G>C non_coding_transcript_exon_variant 0.83
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.83
rrs 1472861 n.1016G>C non_coding_transcript_exon_variant 0.83
rrs 1472862 n.1017T>C non_coding_transcript_exon_variant 0.83
rrs 1472863 n.1018T>C non_coding_transcript_exon_variant 0.83
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.84
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.84
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.84
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.85
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.85
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.85
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.85
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.85
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.85
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.87
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.87
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.86
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.89
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.96
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.96
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.96
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.94
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.94
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.9
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.91
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.93
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.92
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.94
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.92
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.57
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.65
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.77
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.77
rrl 1473758 n.101G>A non_coding_transcript_exon_variant 0.77
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.83
rrl 1473791 n.134A>C non_coding_transcript_exon_variant 0.82
rrl 1473792 n.135C>A non_coding_transcript_exon_variant 0.82
rrl 1473793 n.136G>C non_coding_transcript_exon_variant 0.82
rrl 1473802 n.145C>G non_coding_transcript_exon_variant 0.82
rrl 1473803 n.146G>T non_coding_transcript_exon_variant 0.82
rrl 1473804 n.147T>G non_coding_transcript_exon_variant 0.79
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.82
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.85
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.85
rrl 1473830 n.173T>C non_coding_transcript_exon_variant 0.83
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.83
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.8
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.8
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.75
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.73
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.73
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.5
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.5
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.4
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.33
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.79
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.81
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.86
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 0.9
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.91
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.91
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.91
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.91
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.95
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.91
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.83
rrl 1474220 n.563G>A non_coding_transcript_exon_variant 0.88
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.89
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.86
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.83
rrl 1474292 n.636_642delTCCTCTC non_coding_transcript_exon_variant 0.62
rrl 1474303 n.646A>T non_coding_transcript_exon_variant 0.62
rrl 1474305 n.648G>T non_coding_transcript_exon_variant 0.62
rrl 1474306 n.649A>T non_coding_transcript_exon_variant 0.62
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.62
rrl 1474309 n.653delT non_coding_transcript_exon_variant 0.71
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.87
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.87
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.87
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.93
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.88
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.84
rrl 1474411 n.756_778delACCCACACGCGCATACGCGCGTG non_coding_transcript_exon_variant 0.83
rrl 1474437 n.780G>T non_coding_transcript_exon_variant 0.83
rrl 1474438 n.781A>T non_coding_transcript_exon_variant 0.83
rrl 1474439 n.782A>T non_coding_transcript_exon_variant 0.83
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.87
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.89
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.91
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.91
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.9
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.9
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.96
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.94
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.94
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.94
rrl 1474638 n.981C>T non_coding_transcript_exon_variant 0.96
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.96
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.96
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.94
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.94
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.94
rrl 1474710 n.1053T>G non_coding_transcript_exon_variant 0.94
rrl 1474711 n.1054G>A non_coding_transcript_exon_variant 0.94
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.92
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.94
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.94
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.91
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.88
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.89
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.9
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.91
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.89
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.9
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.9
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.87
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.87
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.9
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.9
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.88
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.88
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.88
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.88
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.88
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.88
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.94
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.93
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.93
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.93
rrl 1475406 n.1749T>G non_coding_transcript_exon_variant 0.5
rrl 1475414 n.1757G>C non_coding_transcript_exon_variant 0.89
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.9
rrl 1475422 n.1765A>G non_coding_transcript_exon_variant 0.9
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.92
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.95
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.96
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.96
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 1.0
rrl 1475481 n.1824C>T non_coding_transcript_exon_variant 1.0
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.94
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.94
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.94
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.94
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.94
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.44
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.38
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.44
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.64
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.77
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.91
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.97
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.97
rrl 1475761 n.2104C>A non_coding_transcript_exon_variant 0.97
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.95
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.95
rrl 1475766 n.2109G>T non_coding_transcript_exon_variant 0.95
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.95
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.96
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.94
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.94
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.93
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.94
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.95
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.95
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.95
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.97
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.91
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.9
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.9
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.9
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.88
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.91
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.91
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.91
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.94
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.94
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.96
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.88
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.88
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.88
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.88
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.88
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.9
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.92
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.92
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.92
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.92
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.94
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.94
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.94
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.96
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.98
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.98
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.98
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.99
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.99
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.99
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.99
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.98
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.96
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.95
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.95
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.95
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.95
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.95
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.95
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.96
rrl 1476608 n.2951C>T non_coding_transcript_exon_variant 0.93
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.92
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.92
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.93
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.93
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.93
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.83
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.8
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.8
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.78
rrl 1476689 n.3032A>C non_coding_transcript_exon_variant 0.56
rrl 1476692 n.3035T>C non_coding_transcript_exon_variant 0.43
rrl 1476694 n.3037G>A non_coding_transcript_exon_variant 0.43
rrl 1476695 n.3038T>G non_coding_transcript_exon_variant 0.43
rrl 1476699 n.3042A>G non_coding_transcript_exon_variant 0.43
rpsA 1833589 c.48A>C synonymous_variant 0.23
rpsA 1833595 c.54T>C synonymous_variant 0.21
rpsA 1833596 p.Ser19Ala missense_variant 0.21
rpsA 1833607 c.66T>C synonymous_variant 0.2
rpsA 1833616 c.75A>C synonymous_variant 0.19
rpsA 1833619 c.78A>C synonymous_variant 0.19
rpsA 1833623 p.Lys28Ala missense_variant 0.18
rpsA 1833676 c.135A>G synonymous_variant 0.39
rpsA 1833679 c.138G>C synonymous_variant 0.39
rpsA 1833682 c.141C>T synonymous_variant 0.39
rpsA 1833685 c.144G>T synonymous_variant 0.41
rpsA 1833694 c.153G>C synonymous_variant 0.39
rpsA 1833697 c.156C>T synonymous_variant 0.41
rpsA 1833709 c.168C>T synonymous_variant 0.37
rpsA 1833727 c.186G>C synonymous_variant 0.29
rpsA 1833733 c.192C>T synonymous_variant 0.21
rpsA 1833734 p.Ala65Ser missense_variant 0.21
rpsA 1833739 c.198C>T synonymous_variant 0.23
rpsA 1833742 c.201A>G synonymous_variant 0.21
rpsA 1833745 c.204G>C synonymous_variant 0.2
rpsA 1833781 c.240T>C synonymous_variant 0.5
rpsA 1833787 c.246C>G synonymous_variant 0.52
rpsA 1833790 c.249T>C synonymous_variant 0.52
rpsA 1833793 c.252C>T synonymous_variant 0.57
rpsA 1833811 c.270G>C synonymous_variant 0.56
rpsA 1833829 c.288A>G synonymous_variant 0.56
rpsA 1833832 c.291G>A synonymous_variant 0.56
rpsA 1833835 c.294C>T synonymous_variant 0.56
rpsA 1833838 c.297G>A synonymous_variant 0.56
rpsA 1833841 c.300C>G synonymous_variant 0.58
rpsA 1833847 c.306C>G synonymous_variant 0.58
rpsA 1833850 c.309C>G synonymous_variant 0.58
rpsA 1833856 c.315A>G synonymous_variant 0.54
rpsA 1833862 c.321G>T synonymous_variant 0.52
rpsA 1833894 p.Ala118Glu missense_variant 0.51
rpsA 1833928 c.387G>C synonymous_variant 0.54
rpsA 1833955 c.414G>C synonymous_variant 0.53
rpsA 1833970 c.429G>T synonymous_variant 0.48
rpsA 1833973 c.432G>C synonymous_variant 0.48
rpsA 1833976 c.435C>T synonymous_variant 0.48
rpsA 1833979 c.438T>C synonymous_variant 0.48
rpsA 1833991 c.450C>G synonymous_variant 0.47
rpsA 1833997 c.456G>C synonymous_variant 0.5
rpsA 1834000 c.459G>C synonymous_variant 0.48
rpsA 1834009 c.468C>T synonymous_variant 0.53
rpsA 1834012 c.471G>C synonymous_variant 0.52
rpsA 1834015 c.474G>C synonymous_variant 0.5
rpsA 1834024 c.483G>C synonymous_variant 0.52
rpsA 1834030 c.489C>G synonymous_variant 0.48
rpsA 1834034 p.Ile165Val missense_variant 0.44
rpsA 1834069 c.528G>C synonymous_variant 0.42
rpsA 1834093 c.552G>C synonymous_variant 0.33
rpsA 1834099 c.558C>G synonymous_variant 0.36
rpsA 1834108 c.567C>A synonymous_variant 0.32
rpsA 1834114 c.573G>C synonymous_variant 0.36
rpsA 1834135 c.594G>C synonymous_variant 0.35
rpsA 1834151 p.Asn204His missense_variant 0.25
rpsA 1834154 p.Asn205Gln missense_variant 0.25
rpsA 1834157 c.616T>C synonymous_variant 0.25
rpsA 1834162 c.621A>G synonymous_variant 0.28
rpsA 1834165 c.624A>G synonymous_variant 0.29
rpsA 1834167 c.628_629delAC frameshift_variant 0.29
rpsA 1834172 c.631_632insGG frameshift_variant 0.28
rpsA 1834177 c.636A>C synonymous_variant 0.28
rpsA 1834183 c.642T>C synonymous_variant 0.29
rpsA 1834210 c.669C>T synonymous_variant 0.4
rpsA 1834231 c.690T>C synonymous_variant 0.32
rpsA 1834234 c.693G>C synonymous_variant 0.32
rpsA 1834246 c.705G>C synonymous_variant 0.3
rpsA 1834249 c.708T>C synonymous_variant 0.24
rpsA 1834252 c.711C>T synonymous_variant 0.27
rpsA 1834261 c.720A>G synonymous_variant 0.23
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834294 c.753G>T synonymous_variant 0.36
rpsA 1834298 p.Gln253Glu missense_variant 0.38
rpsA 1834303 c.762T>C synonymous_variant 0.4
rpsA 1834306 c.765T>C synonymous_variant 0.4
rpsA 1834307 p.Asp256Asn missense_variant 0.4
rpsA 1834327 c.786G>T synonymous_variant 0.52
rpsA 1834340 p.Met267Leu missense_variant 0.53
rpsA 1834348 c.807T>C synonymous_variant 0.49
rpsA 1834354 c.813G>T synonymous_variant 0.45
rpsA 1834357 c.816T>C synonymous_variant 0.47
rpsA 1834360 c.819G>C synonymous_variant 0.48
rpsA 1834361 c.820T>C synonymous_variant 0.47
rpsA 1834366 c.825A>G synonymous_variant 0.47
rpsA 1834369 c.828C>G synonymous_variant 0.47
rpsA 1834378 c.837T>G synonymous_variant 0.53
rpsA 1834384 c.843A>G synonymous_variant 0.56
rpsA 1834396 c.855G>T synonymous_variant 0.56
rpsA 1834399 p.His286Gln missense_variant 0.58
rpsA 1834411 c.870T>C synonymous_variant 0.62
rpsA 1834423 c.882G>C synonymous_variant 0.63
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.65
rpsA 1834465 c.924T>C synonymous_variant 0.57
rpsA 1834468 c.927A>G synonymous_variant 0.55
rpsA 1834474 c.933C>T synonymous_variant 0.48
rpsA 1834489 c.948T>C synonymous_variant 0.5
rpsA 1834528 c.987T>C synonymous_variant 0.53
rpsA 1834534 c.993C>G synonymous_variant 0.47
rpsA 1834540 c.999G>C synonymous_variant 0.41
rpsA 1834543 c.1002C>G synonymous_variant 0.44
rpsA 1834546 c.1005T>C synonymous_variant 0.44
rpsA 1834552 c.1011G>T synonymous_variant 0.44
rpsA 1834555 c.1014T>G synonymous_variant 0.44
rpsA 1834557 p.Ala339Gly missense_variant 0.44
rpsA 1834570 c.1029C>T synonymous_variant 0.47
rpsA 1834574 p.Met345Leu missense_variant 0.47
rpsA 1834606 c.1065C>T synonymous_variant 0.48
rpsA 1834609 c.1068T>C synonymous_variant 0.48
rpsA 1834612 c.1071G>C synonymous_variant 0.5
rpsA 1834619 c.1078T>C synonymous_variant 0.55
rpsA 1834627 c.1086C>G synonymous_variant 0.52
rpsA 1834633 c.1092A>G synonymous_variant 0.48
rpsA 1834639 c.1098T>C synonymous_variant 0.44
rpsA 1834650 p.Thr370Asn missense_variant 0.4
rpsA 1834653 p.Glu371Ala missense_variant 0.4
rpsA 1834663 c.1122C>T synonymous_variant 0.38
rpsA 1834667 p.Ala376Ser missense_variant 0.39
rpsA 1834688 c.1147_1149delAGTinsTCG synonymous_variant 0.41
rpsA 1834733 p.Ala398Pro missense_variant 0.35
rpsA 1834738 c.1197A>G synonymous_variant 0.33
rpsA 1834753 c.1212T>C synonymous_variant 0.33
rpsA 1834759 c.1218A>C synonymous_variant 0.3
rpsA 1834765 p.Glu408Asp missense_variant 0.29
rpsA 1834774 c.1233C>T synonymous_variant 0.29
rpsA 1834776 p.Ala412Glu missense_variant 0.2
rpsA 1834780 c.1239A>G synonymous_variant 0.23
rpsA 1834786 c.1245A>G synonymous_variant 0.24
rpsA 1834787 p.Ala416Ser missense_variant 0.24
rpsA 1834792 c.1251G>C synonymous_variant 0.21
rpsA 1834804 c.1263C>T synonymous_variant 0.25
rpsA 1834810 c.1269C>T synonymous_variant 0.25
rpsA 1834813 c.1272G>C synonymous_variant 0.25
rpsA 1834831 c.1290G>T synonymous_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517917 c.-198G>C upstream_gene_variant 0.27
kasA 2517941 c.-174C>G upstream_gene_variant 0.26
kasA 2517950 c.-165C>G upstream_gene_variant 0.25
kasA 2517959 c.-156C>T upstream_gene_variant 0.26
kasA 2517962 c.-153C>G upstream_gene_variant 0.26
kasA 2517968 c.-147T>C upstream_gene_variant 0.26
kasA 2517974 c.-141T>C upstream_gene_variant 0.25
kasA 2517983 c.-132T>C upstream_gene_variant 0.22
kasA 2517986 c.-129C>T upstream_gene_variant 0.18
kasA 2517989 c.-126T>C upstream_gene_variant 0.18
kasA 2518008 c.-107C>G upstream_gene_variant 0.18
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
thyA 3073839 c.633T>C synonymous_variant 0.23
thyA 3073863 c.609T>C synonymous_variant 0.43
thyA 3073874 p.Ile200Val missense_variant 0.5
thyA 3073878 p.Glu198Asp missense_variant 0.5
thyA 3073884 c.588C>G synonymous_variant 0.46
thyA 3073888 p.Ser195Glu missense_variant 0.46
thyA 3073890 c.580_582delTTGinsCTC synonymous_variant 0.43
thyA 3073893 c.579C>G synonymous_variant 0.43
thyA 3073902 p.Ala190Gln missense_variant 0.4
thyA 3073905 c.567C>G synonymous_variant 0.38
thyA 3073910 p.Met188Val missense_variant 0.38
thyA 3073925 c.547T>C synonymous_variant 0.38
thyA 3073929 c.543T>C synonymous_variant 0.39
thyA 3073959 c.513T>C synonymous_variant 0.39
thyA 3073977 c.495A>G synonymous_variant 0.38
thyA 3073983 c.489C>G synonymous_variant 0.36
thyA 3073989 c.483T>C synonymous_variant 0.29
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339040 c.-78T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.21
rpoA 3877638 c.870T>A synonymous_variant 0.27
rpoA 3877644 c.864C>T synonymous_variant 0.29
rpoA 3877656 c.852T>G synonymous_variant 0.33
rpoA 3877668 c.840A>G synonymous_variant 0.33
rpoA 3877674 c.834C>T synonymous_variant 0.33
rpoA 3877677 p.Ala277Gly missense_variant 0.36
rpoA 3877680 c.828G>T synonymous_variant 0.33
rpoA 3877685 c.823C>T synonymous_variant 0.33
rpoA 3877686 c.822A>G synonymous_variant 0.33
rpoA 3877692 c.816G>C synonymous_variant 0.33
rpoA 3877701 c.807G>T synonymous_variant 0.38
rpoA 3877704 c.804G>T synonymous_variant 0.36
rpoA 3877731 c.777G>T synonymous_variant 0.36
rpoA 3877734 c.774G>C synonymous_variant 0.36
rpoA 3877743 c.765T>C synonymous_variant 0.3
rpoA 3877749 c.759C>T synonymous_variant 0.3
rpoA 3878219 p.Leu97Val missense_variant 0.25
rpoA 3878244 c.264G>A synonymous_variant 0.2
rpoA 3878264 p.Ser82Gly missense_variant 0.27
rpoA 3878271 c.237T>C synonymous_variant 0.38
rpoA 3878283 p.Glu75Asp missense_variant 0.43
rpoA 3878292 c.216T>C synonymous_variant 0.4
rpoA 3878298 c.210A>G synonymous_variant 0.4
rpoA 3878301 c.207C>G synonymous_variant 0.4
rpoA 3878304 c.204G>T synonymous_variant 0.5
rpoA 3878310 c.198G>T synonymous_variant 0.46
rpoA 3878313 c.195G>C synonymous_variant 0.46
rpoA 3878322 c.186A>G synonymous_variant 0.46
rpoA 3878331 c.177A>C synonymous_variant 0.46
rpoA 3878334 c.174T>C synonymous_variant 0.46
rpoA 3878337 c.171T>C synonymous_variant 0.5
rpoA 3878343 c.165C>T synonymous_variant 0.5
rpoA 3878346 c.162T>C synonymous_variant 0.46
rpoA 3878358 c.150C>T synonymous_variant 0.46
rpoA 3878361 c.147G>T synonymous_variant 0.46
rpoA 3878364 c.144A>C synonymous_variant 0.46
rpoA 3878370 c.138T>C synonymous_variant 0.36
rpoA 3878391 c.117T>C synonymous_variant 0.38
rpoA 3878406 c.102G>C synonymous_variant 0.42
rpoA 3878415 c.93C>G synonymous_variant 0.27
clpC1 4038701 c.2004G>C synonymous_variant 0.17
clpC1 4038704 c.2001T>C synonymous_variant 0.17
clpC1 4038707 c.1998C>G synonymous_variant 0.17
clpC1 4038710 c.1995G>C synonymous_variant 0.17
clpC1 4038713 c.1992T>C synonymous_variant 0.23
clpC1 4038740 c.1965G>C synonymous_variant 0.42
clpC1 4038746 c.1959C>T synonymous_variant 0.43
clpC1 4038749 c.1956C>T synonymous_variant 0.4
clpC1 4038755 c.1950G>T synonymous_variant 0.4
clpC1 4038767 c.1938G>T synonymous_variant 0.47
clpC1 4038773 c.1932T>C synonymous_variant 0.47
clpC1 4038791 c.1914G>C synonymous_variant 0.53
clpC1 4038794 p.Ser637Thr missense_variant 0.53
clpC1 4038812 c.1893T>C synonymous_variant 0.52
clpC1 4038815 c.1890G>A synonymous_variant 0.54
clpC1 4038839 c.1866G>C synonymous_variant 0.52
clpC1 4038860 c.1845G>C synonymous_variant 0.53
clpC1 4038878 c.1827A>G synonymous_variant 0.53
clpC1 4038881 c.1824C>T synonymous_variant 0.57
clpC1 4038890 c.1815G>A synonymous_variant 0.61
clpC1 4038905 c.1800A>T synonymous_variant 0.62
clpC1 4038911 c.1794G>T synonymous_variant 0.62
clpC1 4038914 c.1791G>C synonymous_variant 0.62
clpC1 4038917 c.1788C>T synonymous_variant 0.62
clpC1 4038923 c.1782A>G synonymous_variant 0.64
clpC1 4038926 c.1779G>T synonymous_variant 0.65
clpC1 4038953 c.1752A>G synonymous_variant 0.62
clpC1 4038956 c.1749T>C synonymous_variant 0.63
clpC1 4038965 c.1740T>C synonymous_variant 0.7
clpC1 4038971 c.1734T>C synonymous_variant 0.7
clpC1 4038974 c.1731T>C synonymous_variant 0.71
clpC1 4038997 c.1708T>C synonymous_variant 0.71
clpC1 4039004 c.1701C>G synonymous_variant 0.67
clpC1 4039007 c.1698G>C synonymous_variant 0.66
clpC1 4039010 c.1695G>A synonymous_variant 0.68
clpC1 4039022 c.1683A>G synonymous_variant 0.66
clpC1 4039067 c.1638G>C synonymous_variant 0.47
clpC1 4039073 c.1632C>T synonymous_variant 0.47
clpC1 4039079 c.1626C>G synonymous_variant 0.44
clpC1 4039082 c.1623C>T synonymous_variant 0.44
clpC1 4039085 c.1620A>G synonymous_variant 0.47
clpC1 4039091 c.1614G>C synonymous_variant 0.47
clpC1 4039097 c.1608G>T synonymous_variant 0.48
clpC1 4039100 c.1605C>G synonymous_variant 0.48
clpC1 4039106 c.1599G>T synonymous_variant 0.49
clpC1 4039112 c.1593C>G synonymous_variant 0.45
clpC1 4039121 c.1584T>C synonymous_variant 0.47
clpC1 4039133 c.1572C>T synonymous_variant 0.46
clpC1 4039142 c.1563A>G synonymous_variant 0.44
clpC1 4039145 c.1560G>C synonymous_variant 0.43
clpC1 4039169 c.1536A>G synonymous_variant 0.43
clpC1 4039172 c.1533A>G synonymous_variant 0.45
clpC1 4039178 c.1527G>C synonymous_variant 0.43
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.37
clpC1 4039187 c.1518G>T synonymous_variant 0.4
clpC1 4039190 c.1515C>G synonymous_variant 0.38
clpC1 4039199 p.Ala502Glu missense_variant 0.5
clpC1 4039217 c.1488G>C synonymous_variant 0.5
clpC1 4039226 c.1479T>C synonymous_variant 0.45
clpC1 4039274 c.1431G>C synonymous_variant 0.45
clpC1 4039279 p.Val476Ile missense_variant 0.43
clpC1 4039280 c.1425G>C synonymous_variant 0.43
clpC1 4039286 c.1419T>G synonymous_variant 0.43
clpC1 4039289 c.1416T>C synonymous_variant 0.43
clpC1 4039295 c.1410A>G synonymous_variant 0.46
clpC1 4039310 c.1395A>G synonymous_variant 0.43
clpC1 4039313 c.1392C>G synonymous_variant 0.43
clpC1 4039319 c.1386T>C synonymous_variant 0.46
clpC1 4039322 c.1383T>C synonymous_variant 0.46
clpC1 4039328 c.1377A>G synonymous_variant 0.44
clpC1 4039334 c.1371G>C synonymous_variant 0.44
clpC1 4039337 c.1368A>C synonymous_variant 0.44
clpC1 4039347 p.Arg453Lys missense_variant 0.43
clpC1 4039355 c.1350G>C synonymous_variant 0.38
clpC1 4039359 p.Ser449Asn missense_variant 0.38
clpC1 4039361 c.1344C>G synonymous_variant 0.36
clpC1 4039382 c.1323C>G synonymous_variant 0.45
clpC1 4039391 c.1314T>G synonymous_variant 0.36
clpC1 4039394 c.1311G>C synonymous_variant 0.33
clpC1 4039397 c.1308A>G synonymous_variant 0.33
clpC1 4039406 c.1299G>C synonymous_variant 0.29
clpC1 4039409 c.1296T>C synonymous_variant 0.27
clpC1 4039412 c.1293T>C synonymous_variant 0.29
clpC1 4039415 p.Glu430Asp missense_variant 0.32
clpC1 4039427 p.Glu426Asp missense_variant 0.27
clpC1 4039430 c.1275T>C synonymous_variant 0.27
clpC1 4039442 c.1263A>G synonymous_variant 0.24
clpC1 4039448 c.1257A>G synonymous_variant 0.24
clpC1 4039454 c.1251A>G synonymous_variant 0.25
clpC1 4039466 c.1239T>C synonymous_variant 0.26
clpC1 4039469 c.1236T>C synonymous_variant 0.21
clpC1 4039472 c.1233G>C synonymous_variant 0.24
clpC1 4039478 c.1227G>A synonymous_variant 0.25
clpC1 4039481 c.1224T>C synonymous_variant 0.25
clpC1 4039484 c.1221T>C synonymous_variant 0.25
clpC1 4039487 c.1218G>C synonymous_variant 0.24
clpC1 4039499 c.1206G>C synonymous_variant 0.33
clpC1 4039508 c.1197G>C synonymous_variant 0.35
clpC1 4039517 c.1188C>G synonymous_variant 0.25
clpC1 4039522 c.1183C>T synonymous_variant 0.25
clpC1 4039526 c.1179G>C synonymous_variant 0.27
clpC1 4039553 c.1152C>T synonymous_variant 0.22
clpC1 4039556 c.1149G>C synonymous_variant 0.22
clpC1 4039559 c.1146C>G synonymous_variant 0.22
clpC1 4039562 c.1143C>G synonymous_variant 0.25
clpC1 4039565 c.1140G>C synonymous_variant 0.25
clpC1 4039568 p.Met379Leu missense_variant 0.29
clpC1 4039574 p.Ala377Ser missense_variant 0.29
clpC1 4039577 c.1128T>C synonymous_variant 0.29
clpC1 4039580 c.1125C>G synonymous_variant 0.29
clpC1 4039589 c.1116G>C synonymous_variant 0.22
clpC1 4039592 c.1113G>C synonymous_variant 0.4
clpC1 4039598 c.1107C>T synonymous_variant 0.5
clpC1 4039610 c.1095G>C synonymous_variant 0.56
clpC1 4039616 c.1089G>C synonymous_variant 0.53
clpC1 4039622 c.1083C>T synonymous_variant 0.5
clpC1 4039649 c.1056G>C synonymous_variant 0.52
clpC1 4039655 c.1050G>C synonymous_variant 0.5
clpC1 4039664 c.1041G>C synonymous_variant 0.45
clpC1 4039670 c.1035G>T synonymous_variant 0.5
clpC1 4039682 c.1023C>A synonymous_variant 0.53
clpC1 4039691 c.1014G>C synonymous_variant 0.46
clpC1 4039694 c.1011G>C synonymous_variant 0.49
clpC1 4039724 c.981A>G synonymous_variant 0.51
clpC1 4039733 c.972G>C synonymous_variant 0.55
clpC1 4039742 c.963C>T synonymous_variant 0.55
clpC1 4039748 c.957G>C synonymous_variant 0.53
clpC1 4039751 c.954A>G synonymous_variant 0.53
clpC1 4039757 c.948A>G synonymous_variant 0.53
clpC1 4039760 c.945T>C synonymous_variant 0.51
clpC1 4039766 c.939T>C synonymous_variant 0.54
clpC1 4039769 c.936C>G synonymous_variant 0.55
clpC1 4039778 c.927A>G synonymous_variant 0.58
clpC1 4039781 c.924G>C synonymous_variant 0.6
clpC1 4039793 c.912C>G synonymous_variant 0.62
clpC1 4039814 c.891C>G synonymous_variant 0.6
clpC1 4039817 c.888A>C synonymous_variant 0.6
clpC1 4039820 c.885T>G synonymous_variant 0.59
clpC1 4039831 c.874T>C synonymous_variant 0.61
clpC1 4039832 c.873C>G synonymous_variant 0.61
clpC1 4039850 c.855T>C synonymous_variant 0.67
clpC1 4039865 c.840T>C synonymous_variant 0.68
clpC1 4039889 c.816G>C synonymous_variant 0.67
clpC1 4039898 c.807C>G synonymous_variant 0.71
clpC1 4039904 c.801A>G synonymous_variant 0.72
clpC1 4039931 c.774T>C synonymous_variant 0.57
clpC1 4039937 c.768G>C synonymous_variant 0.61
clpC1 4039946 c.759A>T synonymous_variant 0.63
clpC1 4039952 c.753T>C synonymous_variant 0.63
clpC1 4039982 c.723G>C synonymous_variant 0.6
clpC1 4039988 c.717C>G synonymous_variant 0.59
clpC1 4039991 c.714G>T synonymous_variant 0.68
clpC1 4040002 p.His235Asn missense_variant 0.67
clpC1 4040003 c.702G>C synonymous_variant 0.67
clpC1 4040018 c.687G>C synonymous_variant 0.65
clpC1 4040021 c.684A>C synonymous_variant 0.65
clpC1 4040024 c.681A>G synonymous_variant 0.65
clpC1 4040030 c.675C>G synonymous_variant 0.65
clpC1 4040033 c.672G>C synonymous_variant 0.65
clpC1 4040036 c.669C>T synonymous_variant 0.65
clpC1 4040048 c.657C>T synonymous_variant 0.52
clpC1 4040051 c.654C>G synonymous_variant 0.43
clpC1 4040054 c.651G>A synonymous_variant 0.43
clpC1 4040063 c.642G>C synonymous_variant 0.4
clpC1 4040066 c.639G>C synonymous_variant 0.35
clpC1 4040069 c.636G>C synonymous_variant 0.33
clpC1 4040087 c.618G>C synonymous_variant 0.25
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.25
clpC1 4040093 c.612C>G synonymous_variant 0.25
clpC1 4040108 c.597G>C synonymous_variant 0.25
clpC1 4040124 p.Glu194Ser missense_variant 0.21
clpC1 4040141 c.564C>T synonymous_variant 0.14
clpC1 4040147 c.558A>G synonymous_variant 0.14
clpC1 4040156 p.Met183Ile missense_variant 0.14
clpC1 4040159 c.546G>C synonymous_variant 0.13
clpC1 4040166 p.Ala180Gln missense_variant 0.13
clpC1 4040168 c.537G>C synonymous_variant 0.13
clpC1 4040411 c.294T>C synonymous_variant 0.23
clpC1 4040423 c.282A>G synonymous_variant 0.33
clpC1 4040426 c.279T>C synonymous_variant 0.33
clpC1 4040429 c.274_276delTTGinsCTC synonymous_variant 0.33
clpC1 4040435 c.270G>C synonymous_variant 0.35
clpC1 4040450 c.255A>G synonymous_variant 0.38
clpC1 4040456 c.249C>T synonymous_variant 0.38
clpC1 4040459 c.246C>G synonymous_variant 0.33
clpC1 4040462 c.243C>T synonymous_variant 0.3
clpC1 4040465 c.240T>C synonymous_variant 0.3
clpC1 4040468 c.237G>C synonymous_variant 0.32
clpC1 4040471 c.234T>C synonymous_variant 0.32
clpC1 4040477 c.228G>A synonymous_variant 0.33
clpC1 4040480 c.225T>C synonymous_variant 0.33
clpC1 4040486 c.219G>C synonymous_variant 0.38
clpC1 4040495 c.210C>T synonymous_variant 0.42
clpC1 4040522 c.183T>C synonymous_variant 0.5
clpC1 4040525 c.180C>T synonymous_variant 0.48
clpC1 4040528 c.177G>C synonymous_variant 0.46
clpC1 4040534 c.171A>G synonymous_variant 0.42
clpC1 4040537 c.168G>C synonymous_variant 0.42
clpC1 4040540 c.165G>C synonymous_variant 0.44
clpC1 4040546 c.159G>T synonymous_variant 0.44
clpC1 4040561 c.144A>G synonymous_variant 0.37
clpC1 4040567 c.138C>G synonymous_variant 0.31
clpC1 4040570 c.135C>G synonymous_variant 0.29
clpC1 4040573 c.132T>G synonymous_variant 0.3
clpC1 4040582 c.123G>T synonymous_variant 0.25
clpC1 4040585 c.120A>G synonymous_variant 0.27
clpC1 4040588 c.117T>C synonymous_variant 0.29
clpC1 4040594 c.111G>C synonymous_variant 0.25
clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 0.24
clpC1 4040603 c.102T>G synonymous_variant 0.24
clpC1 4040606 c.99T>C synonymous_variant 0.24
clpC1 4040612 c.93G>A synonymous_variant 0.28
clpC1 4040615 c.90C>G synonymous_variant 0.28
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embB 4248043 c.1530C>G synonymous_variant 1.0
aftB 4269153 c.-317C>T upstream_gene_variant 0.15
aftB 4269159 c.-323G>C upstream_gene_variant 0.15
aftB 4269171 c.-335C>G upstream_gene_variant 0.15
aftB 4269183 c.-347T>C upstream_gene_variant 0.21
ubiA 4269191 p.Ser215Gly missense_variant 0.21
ubiA 4269199 p.Ser212Tyr missense_variant 0.21
aftB 4269201 c.-365A>G upstream_gene_variant 0.2
aftB 4269204 c.-368G>C upstream_gene_variant 0.2
aftB 4269213 c.-377C>T upstream_gene_variant 0.21
ubiA 4269220 p.Ala205Lys missense_variant 0.2
aftB 4269222 c.-386T>G upstream_gene_variant 0.2
aftB 4269225 c.-389C>T upstream_gene_variant 0.2
aftB 4269234 c.-398A>G upstream_gene_variant 0.2
aftB 4269237 c.-401C>G upstream_gene_variant 0.2
aftB 4269240 c.-404G>C upstream_gene_variant 0.2
ubiA 4269243 p.His197Gln missense_variant 0.2
aftB 4269258 c.-422C>G upstream_gene_variant 0.17
ubiA 4269271 p.Val188Ala missense_variant 0.16
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408312 c.-110C>T upstream_gene_variant 1.0