Rv0668 - c.1008C>G


Drug resistance types
96 Sensitive 25 RR-TB 78 HR-TB 34 MDR-TB 18 Pre-XDR-TB 2 XDR-TB 90 Other
lineage Counts
lineage Count
lineage4.9 146
lineage2.2.1 40
lineage2.2.2 22
lineage4 10
lineage4.9;lineage9 2
lineage4.8 6
lineage4.4.2 1
lineage2.2.1.1 2
lineage2.2.1;lineage4.5 1
lineage3.1.2.1;lineage4.9 1
lineage4.3.3 3
La1.3 1
lineage3 11
La1.7;lineage4.9 2
lineage4.1.2.1 5
La1.8.1 2
La3;lineage4.9 9
lineage3.1.1 1
lineage2.2.1.1;lineage4 1
lineage4.3.4.1 2
lineage4.1.1.3;lineage4.9 2
La1.2.BCG 1
lineage2.2.1;lineage4 5
lineage2.2.2;lineage4 5
La3;lineage4 1
3
lineage4.1.2 1
lineage4.1.1.1 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.2;lineage4 3
lineage4.5 4
lineage3.1.2.1;lineage3.1.2.2 1
lineage2.2;lineage4.9 1
lineage4.2.2.1 1
lineage4.3.4.2.1 1
lineage4.3.2.1 1
lineage4.9;lineage6.3 1
lineage4.3.2;lineage4.9 1
lineage2.2.2;lineage4.9 1
La2;lineage4.9;lineage9 1
lineage2.2.1;lineage2.2.2 4
lineage4.4.1.1 2
La1.7;lineage4.9;lineage7 3
La2;lineage4.9 1
lineage2;lineage4.9 3
lineage4.9;lineage7 1
lineage4.4.1.2 2
La1.7;lineage3;lineage4.9;lineage7 1
lineage1.1.1;lineage4 1
lineage4.4.1.1.1 2
La1.7.1 1
lineage4.6.5 2
lineage4.2.2.2 1
lineage4.2.1 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.2;La1.8.1 1
lineage1;lineage4.9 1
lineage2 1
lineage3.1.2.2 1
M.canetti;lineage4.9 1
lineage1.1.1 1
lineage2.2.1;lineage4.9 2
lineage4.1;lineage4.9 1
lineage4.9.1 1
lineage2;lineage4 1
lineage4.7 1
lineage3.1.2.1 1
spoligotype Counts
spoligotype Count
None 343
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1180226 HR-TB lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
SRR1184021 Sensitive lineage4.9 None
ERR369163 Other lineage4.9 None
SRR1049004 HR-TB lineage2.2.2 None
SRR1013609 Sensitive lineage4 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR10315751 MDR-TB lineage4.8 None
SRR1013603 HR-TB lineage2.2.1 None
SAMN02360590 MDR-TB lineage2.2.2 None
SRR20969542 Other lineage4.4.2 None
ERR349330 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR15315797 RR-TB lineage2.2.1 None
SRR1048982 HR-TB lineage2.2.1.1 None
ERR1063846 HR-TB lineage4.9 None
ERR4811035 Pre-XDR-TB lineage2.2.1;lineage4.5 None
ERR2027290 Other lineage3.1.2.1;lineage4.9 None
SRR1048868 Pre-XDR-TB lineage2.2.2 None
ERR4818583 Other lineage4.3.3 None
SRR9971270 RR-TB lineage2.2.1 None
ERR4815441 HR-TB lineage4.9 None
SRR1013608 Sensitive lineage2.2.2 None
SRR1180355 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
ERR4769436 Other La1.3 None
SRR1180250 Other lineage4.9 None
SRR5341267 Pre-XDR-TB lineage3 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
SRR1013629 Pre-XDR-TB lineage2.2.2 None
SRR1183111 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR3797073 Other La1.8.1 None
ERR4817731 HR-TB lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR1013569 Pre-XDR-TB lineage2.2.1 None
ERR926164 Other lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR363453 Other lineage4.9 None
SRR1048997 HR-TB lineage2.2.1 None
SRR1180399 Sensitive lineage4.9 None
SRR1013570 Pre-XDR-TB lineage2.2.1 None
ERR369156 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR373947 Other lineage4.9 None
SRR1173310 Other lineage3.1.1 None
SRR9971122 MDR-TB lineage4.8 None
SRR6045191 Sensitive lineage4.9 None
SRR1013599 HR-TB lineage2.2.1.1;lineage4 None
ERR2517475 Other lineage4 None
ERR363500 Other lineage4.9 None
SRR1175491 MDR-TB lineage4.3.4.1 None
ERR4819422 HR-TB lineage4.9 None
SRR1144744 HR-TB lineage2.2.1 None
ERR1034634 HR-TB lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR1915487 Other La1.2.BCG None
SRR1013618 RR-TB lineage2.2.1;lineage4 None
SRR1013597 Sensitive lineage2.2.2;lineage4 None
ERR349266 Other lineage4.9 None
SRR1013553 MDR-TB lineage2.2.2 None
ERR3283028 Other La3;lineage4 None
ERR363456 Sensitive lineage4.9 None
SAMN02360579 HR-TB lineage2.2.1.1 None
ERR987722 MDR-TB None
ERR349300 Other lineage4.9 None
SRR3675510 Sensitive La3;lineage4.9 None
ERR4808964 RR-TB lineage2.2.1 None
ERR363449 Other lineage4.9 None
ERR4817998 Other lineage3 None
SRR1181403 Other lineage4.9 None
SRR1013589 HR-TB lineage2.2.1 None
SRR1013604 HR-TB lineage2.2.1 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR369158 Other lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1048965 HR-TB lineage2.2.1 None
SRR1013577 HR-TB lineage2.2.2 None
SRR1013601 HR-TB lineage2.2.1 None
SRR1048980 HR-TB lineage3 None
SRR1013613 Sensitive lineage2.2.1 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR1013596 Sensitive lineage3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR4817204 Other lineage4.9 None
ERR926165 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR1144809 HR-TB lineage2.2.1 None
SRR5341400 Sensitive lineage4.9 None
ERR363506 Sensitive lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR736848 Other lineage4.9 None
SRR1013621 Pre-XDR-TB lineage2.2.2 None
SAMN02360556 Pre-XDR-TB lineage2.2.2 None
ERR926157 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR16156832 RR-TB lineage2.2;lineage4 None
SRR5341365 Pre-XDR-TB lineage3 None
SRR1048996 Sensitive lineage4.5 None
ERR369161 Sensitive lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR987729 MDR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR1049026 HR-TB lineage2.2;lineage4.9 None
ERR349265 Other lineage4.9 None
SAMN02360586 HR-TB lineage2.2.1 None
SRR1181351 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR16149126 MDR-TB lineage4.2.2.1 None
ERR400345 Other lineage4.9 None
SRR1048885 HR-TB lineage2.2;lineage4 None
SRR11662694 Other lineage4.9 None
ERR9029360 MDR-TB lineage2.2.1 None
ERR4821811 Sensitive lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
ERR3797063 Other La3;lineage4.9 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR4811031 Other lineage4.5 None
ERR400336 Sensitive lineage4.9 None
SAMN02360570 Pre-XDR-TB lineage2.2.1 None
SRR7496471 Sensitive lineage4 None
ERR4811030 Other lineage4.9 None
SRR1048993 HR-TB lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
ERR349299 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR349264 Other lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
SRR1175474 Other lineage4.9 None
SRR1013617 Sensitive lineage2.2.1;lineage4 None
SRR6045371 Other lineage4.9 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR1049027 HR-TB lineage2.2.2;lineage4.9 None
SAMN02360580 HR-TB lineage2.2.1 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR1048870 HR-TB lineage2.2.1;lineage2.2.2 None
SRR6046376 Other lineage3 None
SRR1049041 HR-TB lineage2.2.1;lineage4 None
SRR1183054 Sensitive lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
SRR1180977 Sensitive lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR1048975 HR-TB lineage2.2.1 None
SRR12708384 Sensitive lineage4.9 None
ERR4816478 HR-TB lineage4 None
SAMN02360577 HR-TB lineage3 None
SRR9971112 HR-TB lineage2.2.1 None
SRR12708409 HR-TB lineage4.3.3 None
SRR3675387 Other lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR363502 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR4178226 Sensitive lineage4 None
SRR5341293 Sensitive lineage4.9 None
SRR9971065 RR-TB lineage2.2.1 None
SAMN02360563 Pre-XDR-TB lineage2.2.2 None
SRR1048853 HR-TB lineage2;lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3283040 HR-TB lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR1048969 HR-TB lineage2.2.1;lineage2.2.2 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR9992879 XDR-TB lineage4.3.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR1023509 MDR-TB lineage4.9 None
SRR1180446 Other lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
SRR1049006 HR-TB lineage2.2.2;lineage4 None
ERR4819241 Other lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR4818110 Sensitive lineage4.9 None
ERR3283006 RR-TB lineage4.9 None
ERR363479 Other lineage4.9 None
SAMN02360585 HR-TB lineage4.5 None
SRR1013622 Pre-XDR-TB lineage2.2.2 None
SRR1049023 HR-TB lineage4.9 None
ERR369159 Other lineage4.9 None
ERR363446 Other lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR4817069 RR-TB None
SRR12708416 Sensitive None
ERR9786444 Sensitive lineage4.8 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR5341373 Other lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR4821172 RR-TB lineage4.9 None
SRR1013634 MDR-TB lineage2.2.2 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
SRR1048991 HR-TB lineage2;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR1180440 Other lineage4.9 None
ERR363421 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR16156697 RR-TB lineage2.2.1 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR4818929 HR-TB lineage4.9 None
ERR3797065 RR-TB lineage4.9 None
SRR1013612 Sensitive lineage4.5 None
ERR349296 Sensitive lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR3797048 Other La3;lineage4.9 None
SRR1047993 HR-TB lineage2.2.1 None
ERR7801176 RR-TB lineage4.6.5 None
ERR4178309 Other lineage4.1.2.1 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR926156 Other lineage4.9 None
ERR4816322 Other lineage4.9 None
ERR2513259 Other lineage3 None
ERR926162 Sensitive lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
SRR3675473 Sensitive lineage4.9 None
SAMN02360581 HR-TB lineage2.2.1 None
SRR6046245 Other lineage4.9 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR1048985 HR-TB lineage2.2.1 None
SRR5341345 Sensitive lineage4.9 None
ERR4872269 XDR-TB lineage2.2.1 None
ERR373946 Other lineage4.9 None
SRR1048987 HR-TB lineage2.2.1 None
SAMN02360571 HR-TB lineage2.2.1;lineage2.2.2 None
ERR363426 Sensitive lineage4.9 None
SRR1013633 MDR-TB lineage2.2.2 None
ERR6865502 Sensitive lineage4 None
SRR1181349 Sensitive lineage4 None
SRR7240033 Other La1.2;La1.8.1 None
SRR11342660 MDR-TB lineage2.2.1 None
SRR1048869 HR-TB lineage2.2.1;lineage2.2.2 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR1049040 HR-TB lineage2 None
ERR4816470 HR-TB lineage3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR1175508 Sensitive lineage4.9 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SAMN02360595 Pre-XDR-TB lineage2.2.2 None
SRR1048998 HR-TB lineage2.2.1 None
ERR4188213 Other La1.8.1 None
SAMN02360574 HR-TB lineage2.2.1 None
SRR1013584 HR-TB lineage2.2.2 None
SAMN02360591 Pre-XDR-TB lineage2.2.2 None
SRR5341323 Sensitive lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR363498 Other lineage4.9 None
SRR3675522 Other lineage4.9 None
SRR1013554 MDR-TB lineage2.2.2;lineage4 None
ERR926163 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR978766 RR-TB lineage4.8 None
ERR978767_ERR978765_ERR978766 RR-TB lineage4.8 None
ERR4812155 Other lineage4.9 None
SRR1013610 Sensitive lineage4 None
SRR1049007 HR-TB lineage2.2.2 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3797062 RR-TB lineage4.9 None
SRR1013567 Pre-XDR-TB lineage2.2.2 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
ERR126597 HR-TB lineage4.4.1.2 None
SRR1048992 HR-TB lineage2.2;lineage4 None
SRR1180391 Sensitive lineage4.9 None
SAMN02360564 Pre-XDR-TB lineage2.2.1 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
SRR1184329 Other lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR1048981 HR-TB lineage3 None
ERR502470 RR-TB lineage4.9 None
ERR11465189 RR-TB lineage4.9.1 None
ERR4817915 Other lineage4.9 None
ERR1023502 MDR-TB lineage2;lineage4 None
ERR2446382 Other lineage4 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR1196478 Other lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
ERR926155 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
SRR7496523 Other lineage4.7 None
ERR4811493 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
SRR1048966 MDR-TB lineage2.2.1 None
ERR971389 Other lineage4.9 None
SRR1013630 Pre-XDR-TB lineage2.2.2;lineage4 None
SRR1047996 MDR-TB lineage2.2.2 None
SRR1013607 HR-TB lineage2.2.2 None
SRR1180406 Sensitive lineage4.9 None
ERR369162 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR1013602 HR-TB lineage2.2.1 None
SRR1180300 Sensitive lineage4.9 None
ERR373945 Other lineage4.9 None
SRR1175472 RR-TB lineage4.3.4.1 None
SRR20632814 Sensitive lineage4.9 None
SRR17567917 RR-TB lineage4.4.1.1 None
SRR1180345 Other lineage4.9 None
SAMN02360583 HR-TB lineage2.2.2 None
SRR1175496 Sensitive lineage4.9 None
ERR369157 Sensitive lineage4.9 None
ERR3275450 Other lineage4 None
ERR369151 Other lineage4.9 None
SRR1181256 Other lineage4.9 None
SRR6046839 Other lineage4.9 None
SRR1013598 Sensitive lineage2.2.2;lineage4 None
ERR4188247 HR-TB lineage4.9 None
ERR4816717 RR-TB lineage3.1.2.1 None
ERR4815556 RR-TB lineage3 None
ERR7801175 HR-TB lineage4.6.5 None
ERR4820773 HR-TB lineage4.9 None
SAMEA3501073 RR-TB lineage4.8 None
SRR1048994 HR-TB lineage4.9 None
ERR363474 Sensitive lineage4.9 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR3283031 Other La3;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
SRR1013614 Sensitive lineage2.2.1 None
ERR926154 Sensitive lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None