Rv0668 - c.1008C>G
Drug resistance types
96 Sensitive
25 RR-TB
78 HR-TB
34 MDR-TB
18 Pre-XDR-TB
2 XDR-TB
90 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 6 |
| lineage4.9 | 146 |
| lineage2.2.1 | 40 |
| lineage1.1.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.4.1.2 | 2 |
| lineage4 | 10 |
| lineage2.2.2 | 22 |
| lineage2.2;lineage4 | 3 |
| lineage3 | 11 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.1.2.1 | 5 |
| lineage4.5 | 4 |
| La3;lineage4 | 1 |
| 3 | |
| lineage4.6.5 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage2.2.1;lineage2.2.2 | 4 |
| lineage4.4.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;lineage4.9 | 9 |
| lineage2.2.1.1 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.3.3 | 3 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 5 |
| La1.3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2.2;lineage4 | 5 |
| lineage1.1.1;lineage4 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.4.1.1 | 2 |
| lineage2;lineage4.9 | 3 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| La1.8.1 | 2 |
| lineage2.2.2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| lineage4.7 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.2.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.2.2.1 | 1 |
| lineage2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 343 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4812155 | Other | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR14066533 | RR-TB | lineage1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4178226 | Sensitive | lineage4 | None | SRR5341293 | Sensitive | lineage4.9 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | ERR373947 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1048981 | HR-TB | lineage3 | None | ERR2517475 | Other | lineage4 | None | ERR363500 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SAMN02360585 | HR-TB | lineage4.5 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | ERR4817069 | RR-TB | None | ERR369158 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1181256 | Other | lineage4.9 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR6046839 | Other | lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR2513259 | Other | lineage3 | None | SRR1013614 | Sensitive | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR1049004 | HR-TB | lineage2.2.2 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR349265 | Other | lineage4.9 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048993 | HR-TB | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | ERR349264 | Other | lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR1175474 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4769436 | Other | La1.3 | None | SRR6046376 | Other | lineage3 | None | SRR1180250 | Other | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675387 | Other | lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | ERR363502 | Other | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR363453 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1180399 | Sensitive | lineage4.9 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR1023509 | MDR-TB | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR4819241 | Other | lineage4.9 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR926155 | Other | lineage4.9 | None | ERR363479 | Other | lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1013553 | MDR-TB | lineage2.2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1049023 | HR-TB | lineage4.9 | None | ERR369159 | Other | lineage4.9 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | ERR971389 | Other | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR349300 | Other | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR373945 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR1013634 | MDR-TB | lineage2.2.2 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR363421 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013596 | Sensitive | lineage3 | None | ERR926165 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046245 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR369163 | Other | lineage4.9 | None | SRR1048996 | Sensitive | lineage4.5 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR373946 | Other | lineage4.9 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | ERR4188213 | Other | La1.8.1 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR4816478 | HR-TB | lineage4 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | SRR1013610 | Sensitive | lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR4817915 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1180446 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR7496523 | Other | lineage4.7 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | ERR987722 | MDR-TB | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR5341373 | Other | lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR369151 | Other | lineage4.9 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1013613 | Sensitive | lineage2.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1013612 | Sensitive | lineage4.5 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4817204 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4815556 | RR-TB | lineage3 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR4820773 | HR-TB | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR926156 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | ERR926157 | Other | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR16149126 | MDR-TB | lineage4.2.2.1 | None | ERR400345 | Other | lineage4.9 | None | SRR1013633 | MDR-TB | lineage2.2.2 | None | ERR6865502 | Sensitive | lineage4 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049040 | HR-TB | lineage2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4811030 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | ERR926163 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None |
|---|
