TB-Profiler result

Run: SRR16156832
Summary

Run ID: SRR16156832

Sample name:

Date: 03-04-2023 16:42:15

Number of reads: 484229

Percentage reads mapped: 12.11

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.97 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.94 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.99 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 1.0 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.97 kanamycin, capreomycin, aminoglycosides, amikacin
embB 4247429 p.Met306Val missense_variant 0.29 ethambutol
ethA 4326333 p.Ala381Pro missense_variant 1.0 ethionamide
gid 4407967 p.Leu79Ser missense_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6659 p.Met474Leu missense_variant 0.4
gyrB 6737 p.Thr500Ala missense_variant 0.5
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8755 p.Glu485Val missense_variant 0.25
gyrA 8787 p.Thr496Ala missense_variant 0.22
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9593 c.2292G>A synonymous_variant 0.67
fgd1 491139 p.Glu119Asp missense_variant 0.67
fgd1 491504 p.Leu241Pro missense_variant 0.22
fgd1 491563 p.Ser261Gly missense_variant 0.18
fgd1 491581 p.Glu267* stop_gained 0.2
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 576304 c.957G>T synonymous_variant 0.2
ccsA 620082 c.192G>A synonymous_variant 0.5
rpoB 760674 c.868T>C synonymous_variant 0.17
rpoB 760769 c.963C>G synonymous_variant 0.25
rpoB 760776 c.970_972delTCGinsAGC synonymous_variant 0.2
rpoB 760793 c.987A>G synonymous_variant 0.22
rpoB 760805 c.999G>C synonymous_variant 0.29
rpoB 760916 c.1110C>T synonymous_variant 0.94
rpoB 760920 p.Leu372Ile missense_variant 0.91
rpoB 760925 c.1119T>C synonymous_variant 0.9
rpoB 760926 p.Thr374Ala missense_variant 0.94
rpoB 760931 c.1125C>G synonymous_variant 0.93
rpoB 760944 p.Gln380Glu missense_variant 0.94
rpoB 760958 c.1152G>C synonymous_variant 0.94
rpoB 760959 p.Val385Thr missense_variant 0.94
rpoB 760965 p.Met387Leu missense_variant 0.94
rpoB 760970 c.1164G>C synonymous_variant 0.94
rpoB 760973 c.1167G>C synonymous_variant 0.92
rpoB 760982 c.1176G>C synonymous_variant 0.92
rpoB 760985 c.1179G>C synonymous_variant 0.92
rpoB 760988 c.1182C>G synonymous_variant 0.97
rpoB 760991 c.1185G>C synonymous_variant 0.97
rpoB 760997 c.1191G>C synonymous_variant 0.97
rpoB 761015 c.1209G>C synonymous_variant 0.97
rpoB 761027 c.1221A>C synonymous_variant 0.97
rpoB 761036 c.1230G>C synonymous_variant 0.96
rpoB 761037 c.1231T>C synonymous_variant 0.96
rpoB 761051 c.1245G>C synonymous_variant 0.86
rpoB 761054 c.1248G>C synonymous_variant 0.88
rpoB 761060 c.1254C>G synonymous_variant 0.88
rpoB 761063 c.1257C>G synonymous_variant 0.88
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.94
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.9
rpoB 761102 c.1296A>G synonymous_variant 0.96
rpoB 761132 c.1326G>C synonymous_variant 0.97
rpoB 761133 c.1327T>C synonymous_variant 0.97
rpoB 761138 c.1332C>G synonymous_variant 0.97
rpoB 761147 c.1341C>T synonymous_variant 0.94
rpoB 761150 c.1344A>C synonymous_variant 0.94
rpoB 761156 c.1350G>C synonymous_variant 0.94
rpoB 761162 c.1356G>C synonymous_variant 0.94
rpoB 761165 c.1359G>C synonymous_variant 0.94
rpoB 761168 c.1362C>G synonymous_variant 0.94
rpoB 761174 c.1368T>C synonymous_variant 0.94
rpoB 761180 c.1374A>C synonymous_variant 0.94
rpoB 761183 c.1377T>C synonymous_variant 0.94
rpoB 761186 p.Glu460Asp missense_variant 0.94
rpoB 761195 c.1389G>C synonymous_variant 0.94
rpoB 761207 c.1401C>T synonymous_variant 0.94
rpoB 761213 c.1407G>C synonymous_variant 0.94
rpoB 761234 c.1428G>C synonymous_variant 0.88
rpoB 761243 c.1437G>C synonymous_variant 0.85
rpoB 761249 c.1443A>G synonymous_variant 0.85
rpoB 761255 c.1449T>G synonymous_variant 0.4
rpoB 761258 c.1452G>A synonymous_variant 0.4
rpoB 761261 c.1455G>C synonymous_variant 0.5
rpoB 761264 c.1458C>G synonymous_variant 0.5
rpoB 761273 c.1467T>C synonymous_variant 0.5
rpoB 761477 c.1671C>G synonymous_variant 0.33
rpoB 761916 p.Asp704His missense_variant 0.43
rpoB 761925 p.Met707Leu missense_variant 0.43
rpoB 761933 c.2127G>C synonymous_variant 0.38
rpoB 761945 c.2139G>C synonymous_variant 0.5
rpoB 761948 c.2142G>C synonymous_variant 0.5
rpoB 761951 c.2145G>C synonymous_variant 0.5
rpoB 761954 c.2148C>G synonymous_variant 0.5
rpoB 761955 p.Ile717Phe missense_variant 0.69
rpoB 761963 c.2157G>C synonymous_variant 0.8
rpoB 761974 p.His723Leu missense_variant 0.97
rpoB 762003 p.Asn733Gln missense_variant 0.97
rpoB 762009 p.Leu735Met missense_variant 0.97
rpoB 762015 p.Glu737Ser missense_variant 0.97
rpoB 762026 c.2220G>C synonymous_variant 0.97
rpoB 762053 c.2247T>C synonymous_variant 0.98
rpoB 762057 p.Ile751Val missense_variant 0.98
rpoB 762062 c.2256T>C synonymous_variant 0.98
rpoB 762065 c.2259T>C synonymous_variant 0.97
rpoB 762083 c.2277T>C synonymous_variant 1.0
rpoB 762086 c.2280G>C synonymous_variant 1.0
rpoB 762098 c.2292C>G synonymous_variant 1.0
rpoB 762101 c.2295C>T synonymous_variant 1.0
rpoB 762110 c.2304G>C synonymous_variant 1.0
rpoB 762114 p.Ile770Val missense_variant 1.0
rpoB 762122 p.Asp772Glu missense_variant 1.0
rpoC 762383 c.-987C>G upstream_gene_variant 0.75
rpoB 762387 p.Glu861Gln missense_variant 0.85
rpoC 762398 c.-972T>C upstream_gene_variant 0.88
rpoC 762401 c.-969G>C upstream_gene_variant 0.88
rpoC 762404 c.-966T>C upstream_gene_variant 0.89
rpoC 762410 c.-960T>G upstream_gene_variant 0.89
rpoC 762416 c.-954A>G upstream_gene_variant 0.89
rpoB 762426 p.Ser874Thr missense_variant 0.89
rpoC 762434 c.-936T>C upstream_gene_variant 0.89
rpoB 762441 p.Leu879Met missense_variant 0.85
rpoC 762452 c.-918G>C upstream_gene_variant 0.85
rpoC 762470 c.-900G>C upstream_gene_variant 0.85
rpoB 762474 p.Gly890Ser missense_variant 0.85
rpoB 762489 p.Val895Leu missense_variant 0.89
rpoC 762509 c.-861T>G upstream_gene_variant 0.89
rpoC 762512 c.-858C>G upstream_gene_variant 0.89
rpoC 762533 c.-837T>C upstream_gene_variant 0.6
rpoC 762818 c.-552C>G upstream_gene_variant 0.67
rpoC 762827 c.-543G>C upstream_gene_variant 0.77
rpoB 762832 p.Ser1009Thr missense_variant 0.86
rpoB 762849 p.Tyr1015Asp missense_variant 0.91
rpoC 762857 c.-513C>G upstream_gene_variant 0.91
rpoB 762858 p.Thr1018Ser missense_variant 0.91
rpoC 762863 c.-507T>G upstream_gene_variant 0.95
rpoC 762866 c.-504C>T upstream_gene_variant 0.95
rpoB 762878 p.Ile1024Met missense_variant 0.91
rpoB 762879 p.Met1025Leu missense_variant 0.91
rpoC 762920 c.-450C>T upstream_gene_variant 0.96
rpoC 762926 c.-444C>G upstream_gene_variant 0.96
rpoC 762929 c.-441G>C upstream_gene_variant 0.96
rpoC 762947 c.-423C>G upstream_gene_variant 0.96
rpoC 762971 c.-399G>C upstream_gene_variant 0.94
rpoC 762980 c.-390T>A upstream_gene_variant 0.85
rpoC 762989 c.-381G>C upstream_gene_variant 0.8
rpoC 762995 c.-375G>C upstream_gene_variant 0.67
rpoC 763430 c.61_63delAGGinsCGC synonymous_variant 0.73
rpoC 763434 p.Gln22Arg missense_variant 0.73
rpoC 763444 c.75T>C synonymous_variant 0.83
rpoC 763456 c.87A>G synonymous_variant 0.94
rpoC 763468 c.99G>C synonymous_variant 0.96
rpoC 763483 c.114G>C synonymous_variant 0.97
rpoC 763486 c.117T>G synonymous_variant 0.97
rpoC 763504 c.135C>A synonymous_variant 0.99
rpoC 763507 c.138G>C synonymous_variant 0.99
rpoC 763528 c.159G>C synonymous_variant 0.99
rpoC 763531 c.162G>C synonymous_variant 0.99
rpoC 763534 c.165T>C synonymous_variant 0.99
rpoC 763537 c.168C>T synonymous_variant 0.99
rpoC 763546 c.177A>G synonymous_variant 0.98
rpoC 763550 p.Tyr61Ala missense_variant 0.98
rpoC 763570 c.201G>C synonymous_variant 0.96
rpoC 763622 p.Ala85Ser missense_variant 0.94
rpoC 763633 c.264T>C synonymous_variant 0.93
rpoC 763636 c.267T>C synonymous_variant 0.93
rpoC 763639 p.Glu90Asp missense_variant 0.93
rpoC 763642 c.273G>C synonymous_variant 0.93
rpoC 763660 c.291T>G synonymous_variant 0.92
rpoC 763669 c.300C>G synonymous_variant 0.92
rpoC 763696 c.327T>C synonymous_variant 0.9
rpoC 763708 c.339G>C synonymous_variant 0.92
rpoC 763714 c.345G>C synonymous_variant 0.92
rpoC 763717 c.348T>C synonymous_variant 0.92
rpoC 763732 c.363C>G synonymous_variant 0.92
rpoC 763744 c.375G>C synonymous_variant 0.93
rpoC 763751 p.Ile128Val missense_variant 0.92
rpoC 763765 c.396T>G synonymous_variant 0.88
rpoC 763772 p.Val135Met missense_variant 0.87
rpoC 763786 c.417C>G synonymous_variant 0.89
rpoC 763796 p.Met143Val missense_variant 0.6
rpoC 764140 c.771C>T synonymous_variant 0.4
rpoC 764344 c.975C>T synonymous_variant 0.84
rpoC 764359 c.990C>G synonymous_variant 0.87
rpoC 764371 c.1002G>C synonymous_variant 0.94
rpoC 764377 c.1008C>G synonymous_variant 0.96
rpoC 764380 c.1011G>C synonymous_variant 0.96
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.96
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.99
rpoC 764428 c.1059G>C synonymous_variant 0.97
rpoC 764434 c.1065A>G synonymous_variant 0.97
rpoC 764435 c.1066A>C synonymous_variant 0.97
rpoC 764441 p.Ile358Leu missense_variant 0.96
rpoC 764446 c.1077T>C synonymous_variant 0.96
rpoC 764449 c.1080G>C synonymous_variant 0.96
rpoC 764452 c.1083T>C synonymous_variant 0.95
rpoC 764458 c.1089G>C synonymous_variant 0.97
rpoC 764461 c.1092A>G synonymous_variant 0.97
rpoC 764485 c.1116G>C synonymous_variant 0.97
rpoC 764497 c.1128A>G synonymous_variant 0.96
rpoC 764498 p.Ser377Ala missense_variant 0.96
rpoC 764507 p.Ala380Ser missense_variant 0.97
rpoC 764521 c.1152T>C synonymous_variant 0.98
rpoC 764539 c.1170C>G synonymous_variant 0.98
rpoC 764542 c.1173C>G synonymous_variant 0.98
rpoC 764548 c.1179G>C synonymous_variant 0.98
rpoC 764560 c.1191T>C synonymous_variant 0.99
rpoC 764575 c.1206T>C synonymous_variant 0.99
rpoC 764581 c.1212T>C synonymous_variant 0.99
rpoC 764582 p.Leu405Met missense_variant 0.99
rpoC 764605 c.1236G>C synonymous_variant 0.97
rpoC 764611 c.1242G>T synonymous_variant 0.97
rpoC 764632 c.1263T>C synonymous_variant 0.96
rpoC 764635 c.1266C>G synonymous_variant 0.98
rpoC 764650 c.1281G>C synonymous_variant 0.98
rpoC 764665 c.1296C>G synonymous_variant 0.98
rpoC 764668 c.1299C>T synonymous_variant 0.96
rpoC 764671 c.1302G>C synonymous_variant 0.96
rpoC 764695 c.1326T>C synonymous_variant 0.96
rpoC 764706 p.Leu446Gln missense_variant 0.95
rpoC 764746 c.1377G>T synonymous_variant 0.97
rpoC 764749 c.1380G>C synonymous_variant 0.97
rpoC 764758 c.1389C>G synonymous_variant 0.97
rpoC 764764 c.1395T>C synonymous_variant 0.97
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.97
rpoC 764804 p.Gln479Phe missense_variant 0.94
rpoC 764809 c.1440C>T synonymous_variant 0.96
rpoC 764812 c.1443C>G synonymous_variant 0.94
rpoC 764815 c.1446A>G synonymous_variant 0.96
rpoC 764818 c.1449G>C synonymous_variant 0.96
rpoC 764824 c.1455T>C synonymous_variant 0.98
rpoC 764833 c.1464A>G synonymous_variant 0.98
rpoC 764843 p.Ala492Thr missense_variant 0.97
rpoC 764857 c.1488G>C synonymous_variant 0.95
rpoC 764858 c.1489T>C synonymous_variant 0.97
rpoC 764872 c.1503A>C synonymous_variant 0.96
rpoC 764887 c.1518G>T synonymous_variant 0.83
rpoC 764888 c.1519T>C synonymous_variant 0.83
rpoC 764893 c.1524T>C synonymous_variant 0.83
rpoC 764911 c.1542A>G synonymous_variant 0.67
rpoC 764912 p.Met515Gln missense_variant 0.67
rpoC 764917 c.1548G>C synonymous_variant 0.67
rpoC 764923 c.1554A>G synonymous_variant 0.67
rpoC 764933 p.Ile522Leu missense_variant 0.44
rpoC 764948 c.1579T>C synonymous_variant 0.5
rpoC 764953 c.1584G>C synonymous_variant 0.44
rpoC 764956 c.1587T>C synonymous_variant 0.5
rpoC 764957 p.Glu530Ser missense_variant 0.44
rpoC 764968 c.1599T>C synonymous_variant 0.44
rpoC 764971 c.1602C>G synonymous_variant 0.44
rpoC 764983 c.1614T>C synonymous_variant 0.36
rpoC 764995 c.1626C>G synonymous_variant 0.33
rpoC 764998 c.1629G>C synonymous_variant 0.33
rpoC 765478 c.2109T>C synonymous_variant 0.4
rpoC 765488 p.Ile707Val missense_variant 0.4
rpoC 765493 c.2124G>C synonymous_variant 0.4
rpoC 765494 p.Val709Thr missense_variant 0.4
rpoC 765499 c.2130C>G synonymous_variant 0.4
rpoC 765505 c.2136C>G synonymous_variant 0.4
rpoC 765506 p.Val713Leu missense_variant 0.4
rpoC 765514 p.Lys715Asn missense_variant 0.4
rpoC 765533 p.Tyr722His missense_variant 0.67
rpoC 765875 p.Val836Ile missense_variant 0.73
rpoC 765886 c.2517C>G synonymous_variant 0.82
rpoC 765888 p.Phe840Tyr missense_variant 0.83
rpoC 765892 c.2523T>C synonymous_variant 0.86
rpoC 765902 p.Thr845Ser missense_variant 0.9
rpoC 765910 c.2541G>C synonymous_variant 0.88
rpoC 765920 p.Ile851Ser missense_variant 0.84
rpoC 765923 p.Asn852Ala missense_variant 0.86
rpoC 765937 c.2568T>C synonymous_variant 0.82
rpoC 765940 c.2571A>C synonymous_variant 0.84
rpoC 765947 c.2578_2580delTTGinsCTC synonymous_variant 0.83
rpoC 765962 c.2593T>C synonymous_variant 0.82
rpoC 765965 p.Arg866Lys missense_variant 0.84
rpoC 765973 c.2604C>G synonymous_variant 0.82
rpoC 765974 p.Asp869Asn missense_variant 0.83
rpoC 765979 c.2610C>G synonymous_variant 0.83
rpoC 765994 c.2625A>T synonymous_variant 0.83
rpoC 766000 c.2631G>C synonymous_variant 0.81
rpoC 766021 c.2652G>C synonymous_variant 0.8
rpoC 766027 c.2658G>C synonymous_variant 0.76
rpoC 766034 p.His889Asp missense_variant 0.72
mmpL5 775617 p.Pro955Leu missense_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 777157 c.1324C>A synonymous_variant 0.29
mmpS5 778748 p.Pro53His missense_variant 0.22
mmpS5 778755 p.Phe51Leu missense_variant 0.22
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781796 p.Met79Ile missense_variant 0.75
rpsL 781802 c.243G>C synonymous_variant 0.5
fbiC 1303667 p.Thr246Ser missense_variant 0.5
Rv1258c 1407219 p.Ala41Asp missense_variant 0.67
embR 1416662 p.Arg229Leu missense_variant 0.67
embR 1417090 c.258C>G synonymous_variant 0.33
embR 1417457 c.-110C>A upstream_gene_variant 1.0
atpE 1461151 p.Ile36Asn missense_variant 0.4
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.2
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.83
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.83
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.83
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.84
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.85
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.93
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.95
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.92
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.91
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.85
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.82
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.83
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.83
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.83
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.85
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.85
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.85
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.85
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.88
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.94
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.97
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.97
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.98
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.99
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.99
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.98
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.99
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.99
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.99
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.98
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.98
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.98
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.98
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.97
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.98
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.97
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.98
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.98
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.98
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.97
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.47
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.3
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.92
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.98
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.98
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.98
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473022 n.1177G>A non_coding_transcript_exon_variant 1.0
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.98
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.97
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.98
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.96
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.95
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.94
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.95
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.94
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.94
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.95
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.95
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.94
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.95
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.97
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.97
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 1.0
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.98
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.97
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.97
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.97
rrs 1473317 n.1472G>A non_coding_transcript_exon_variant 0.97
rrl 1473845 n.188G>C non_coding_transcript_exon_variant 1.0
rrl 1474112 n.455T>G non_coding_transcript_exon_variant 0.83
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.96
rrl 1474125 n.468C>G non_coding_transcript_exon_variant 0.96
rrl 1474133 n.476T>A non_coding_transcript_exon_variant 0.97
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 1.0
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.93
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.93
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.93
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.93
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.93
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.93
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.93
rrl 1474186 n.529A>T non_coding_transcript_exon_variant 0.91
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.95
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.97
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.96
rrl 1474275 n.618T>A non_coding_transcript_exon_variant 0.94
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.95
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.95
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 1.0
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 1.0
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 1.0
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.89
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.91
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.91
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.95
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.95
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.95
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.95
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.95
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.94
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.94
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.93
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.94
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.99
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.99
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.97
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.97
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.97
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.97
rrl 1474662 n.1005C>A non_coding_transcript_exon_variant 0.96
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.96
rrl 1474688 n.1031G>T non_coding_transcript_exon_variant 0.96
rrl 1474710 n.1053T>G non_coding_transcript_exon_variant 0.94
rrl 1474711 n.1054_1055insAA non_coding_transcript_exon_variant 0.93
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.92
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.91
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.93
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.94
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.94
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.94
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.94
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.94
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.94
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.95
rrl 1474784 n.1127C>T non_coding_transcript_exon_variant 0.96
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.96
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.97
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.97
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.97
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.97
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.95
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.95
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.95
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.92
rrl 1474944 n.1287G>A non_coding_transcript_exon_variant 0.71
rrl 1474948 n.1291C>T non_coding_transcript_exon_variant 0.5
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.6
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.6
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.6
rrl 1475068 n.1411A>G non_coding_transcript_exon_variant 0.5
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.5
rrl 1475078 n.1421T>C non_coding_transcript_exon_variant 0.5
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.5
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.5
rrl 1475088 n.1431A>G non_coding_transcript_exon_variant 0.5
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.5
rrl 1475094 n.1437C>T non_coding_transcript_exon_variant 0.5
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.5
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.5
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.5
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.5
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.43
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.43
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.43
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.43
rrl 1475285 n.1628G>A non_coding_transcript_exon_variant 0.22
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 0.75
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.67
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.67
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.73
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.73
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.73
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.73
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.73
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.33
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.56
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.56
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.56
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.69
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.86
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.87
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.92
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.94
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.95
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.97
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.97
rrl 1475757 n.2101_2104delACCC non_coding_transcript_exon_variant 0.98
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.98
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.98
rrl 1475766 n.2109G>C non_coding_transcript_exon_variant 0.97
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.98
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.98
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.97
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.97
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.96
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.97
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.98
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.97
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.97
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.96
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.97
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.96
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.96
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.98
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.95
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.95
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.95
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.94
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.93
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.93
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.93
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.57
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.6
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.6
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.51
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.98
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.98
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.95
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.95
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.95
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.95
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.95
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.95
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.94
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.95
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.95
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.97
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.96
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.96
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.96
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.96
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.96
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.94
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.93
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.91
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.93
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.9
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.89
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.89
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.89
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.89
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.89
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.89
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.71
fabG1 1673608 p.Gly57Ser missense_variant 0.67
rpsA 1833628 c.87G>C synonymous_variant 0.71
rpsA 1833653 p.Ile38Leu missense_variant 0.9
rpsA 1833661 c.120A>G synonymous_variant 0.9
rpsA 1833668 p.Ile43Val missense_variant 0.9
rpsA 1833676 c.135A>G synonymous_variant 0.92
rpsA 1833685 c.144G>C synonymous_variant 0.95
rpsA 1833694 c.153G>C synonymous_variant 1.0
rpsA 1833697 c.156C>G synonymous_variant 1.0
rpsA 1833721 c.180A>G synonymous_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833733 c.192C>G synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833763 c.222C>G synonymous_variant 1.0
rpsA 1833769 c.228C>G synonymous_variant 1.0
rpsA 1833770 p.Asn77Asp missense_variant 1.0
rpsA 1833781 c.240T>G synonymous_variant 1.0
rpsA 1833782 p.Ser81Ala missense_variant 1.0
rpsA 1833787 c.246C>G synonymous_variant 1.0
rpsA 1833790 c.249T>C synonymous_variant 1.0
rpsA 1833794 p.Glu85Thr missense_variant 1.0
rpsA 1833802 c.261A>G synonymous_variant 1.0
rpsA 1833811 c.270G>C synonymous_variant 1.0
rpsA 1833829 c.288A>G synonymous_variant 1.0
rpsA 1833835 c.294C>T synonymous_variant 1.0
rpsA 1833838 c.297G>C synonymous_variant 1.0
rpsA 1833841 c.300C>G synonymous_variant 1.0
rpsA 1833850 c.309C>G synonymous_variant 1.0
rpsA 1833856 c.315A>G synonymous_variant 1.0
rpsA 1833862 c.321G>C synonymous_variant 1.0
rpsA 1833874 c.333T>C synonymous_variant 0.89
rpsA 1833877 c.336C>G synonymous_variant 0.83
rpsA 1833884 p.Thr115Asp missense_variant 0.84
rpsA 1833893 p.Ala118Lys missense_variant 0.83
rpsA 1833896 p.Leu119Ile missense_variant 0.83
rpsA 1833905 p.Lys122Glu missense_variant 0.83
rpsA 1833912 p.Glu124Gly missense_variant 0.83
rpsA 1833915 p.Ala125Val missense_variant 0.79
rpsA 1833920 p.Lys127Glu missense_variant 0.84
rpsA 1833928 c.387G>C synonymous_variant 0.91
rpsA 1833940 c.399C>G synonymous_variant 0.92
rpsA 1833949 c.408T>C synonymous_variant 0.94
rpsA 1833955 c.414G>C synonymous_variant 0.94
rpsA 1833970 c.429G>C synonymous_variant 0.93
rpsA 1833979 c.438T>C synonymous_variant 0.94
rpsA 1833985 c.444G>C synonymous_variant 0.94
rpsA 1833988 c.447C>G synonymous_variant 0.94
rpsA 1833994 c.453G>C synonymous_variant 0.94
rpsA 1833997 c.456G>C synonymous_variant 0.94
rpsA 1834012 c.471G>C synonymous_variant 0.94
rpsA 1834025 p.Gln162Ala missense_variant 0.96
rpsA 1834040 p.Lys167Gln missense_variant 0.97
rpsA 1834043 p.Glu168Lys missense_variant 0.97
rpsA 1834046 p.Ile169Leu missense_variant 0.97
rpsA 1834054 c.513C>G synonymous_variant 0.96
rpsA 1834093 c.552G>C synonymous_variant 0.93
rpsA 1834102 c.561T>C synonymous_variant 0.9
rpsA 1834114 c.573G>C synonymous_variant 0.89
rpsA 1834195 c.654G>C synonymous_variant 0.9
rpsA 1834213 c.672G>C synonymous_variant 1.0
rpsA 1834219 c.678C>G synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 1.0
rpsA 1834225 c.684C>G synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 0.96
rpsA 1834240 c.699T>C synonymous_variant 0.96
rpsA 1834243 c.702G>C synonymous_variant 0.97
rpsA 1834249 c.708T>C synonymous_variant 0.98
rpsA 1834261 c.720A>G synonymous_variant 0.98
rpsA 1834264 c.723G>C synonymous_variant 0.98
rpsA 1834294 c.753G>C synonymous_variant 0.97
rpsA 1834298 p.Gln253Glu missense_variant 0.97
rpsA 1834303 c.762T>G synonymous_variant 0.97
rpsA 1834306 c.765T>C synonymous_variant 0.97
rpsA 1834307 p.Asp256Gln missense_variant 0.97
rpsA 1834327 c.786G>C synonymous_variant 0.98
rpsA 1834333 p.Asp264Glu missense_variant 0.98
rpsA 1834336 c.795C>G synonymous_variant 0.97
rpsA 1834348 c.807T>C synonymous_variant 0.97
rpsA 1834354 c.813G>T synonymous_variant 0.97
rpsA 1834357 c.816T>C synonymous_variant 0.97
rpsA 1834360 c.819G>C synonymous_variant 0.97
rpsA 1834361 c.820T>C synonymous_variant 0.97
rpsA 1834366 c.825A>G synonymous_variant 0.97
rpsA 1834369 c.828C>G synonymous_variant 0.98
rpsA 1834378 c.837T>C synonymous_variant 0.98
rpsA 1834384 c.843A>G synonymous_variant 0.99
rpsA 1834395 p.Arg285Gln missense_variant 0.99
rpsA 1834398 p.His286Leu missense_variant 0.98
rpsA 1834411 c.870T>C synonymous_variant 0.99
rpsA 1834417 c.876G>C synonymous_variant 0.98
rpsA 1834418 p.Ile293Leu missense_variant 0.96
rpsA 1834423 c.882G>C synonymous_variant 0.98
rpsA 1834427 p.Ile296Val missense_variant 0.98
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 1.0
rpsA 1834456 c.915T>G synonymous_variant 0.98
rpsA 1834468 c.927A>G synonymous_variant 0.98
rpsA 1834480 c.939C>G synonymous_variant 0.96
rpsA 1834486 p.Glu315Asp missense_variant 0.98
rpsA 1834489 c.948T>C synonymous_variant 0.97
rpsA 1834501 c.960G>C synonymous_variant 0.97
rpsA 1834513 c.972C>G synonymous_variant 0.96
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101697 p.Ala449Gly missense_variant 0.22
katG 2153966 p.Ala716Thr missense_variant 0.25
katG 2154410 p.Thr568Ala missense_variant 0.67
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155794 c.318G>A synonymous_variant 0.5
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169100 p.Gly505Trp missense_variant 0.5
PPE35 2170761 c.-149G>T upstream_gene_variant 0.25
Rv1979c 2222232 c.933G>T synonymous_variant 0.25
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289059 c.183A>T synonymous_variant 0.5
kasA 2518702 c.588C>T synonymous_variant 0.4
pepQ 2859596 p.Ala275Thr missense_variant 0.67
ribD 2987548 p.Arg237Leu missense_variant 0.33
Rv2752c 3064735 p.Pro486Leu missense_variant 0.2
thyX 3067726 p.Glu74* stop_gained 0.5
thyA 3073693 p.Pro260Leu missense_variant 0.22
thyA 3074276 p.Asp66Tyr missense_variant 0.17
ald 3086729 c.-91A>G upstream_gene_variant 0.5
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3086935 p.Ala39Val missense_variant 0.29
ald 3087697 p.Thr293Met missense_variant 0.18
fbiD 3339565 p.Val150Leu missense_variant 0.25
Rv3083 3448743 c.240G>A synonymous_variant 0.4
Rv3083 3448763 p.Asp87Val missense_variant 0.4
Rv3083 3449815 p.Gln438Lys missense_variant 0.67
fprA 3473877 c.-130G>A upstream_gene_variant 0.29
fprA 3473984 c.-23G>T upstream_gene_variant 0.29
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
whiB7 3568643 p.Gln13* stop_gained 0.33
Rv3236c 3612150 c.966delG frameshift_variant 0.29
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
Rv3236c 3612866 p.Ser84Thr missense_variant 0.4
fbiA 3640658 p.His39Arg missense_variant 1.0
fbiB 3640962 c.-573C>A upstream_gene_variant 1.0
fbiB 3641124 c.-411C>T upstream_gene_variant 0.33
alr 3840822 p.Ala200Val missense_variant 0.25
rpoA 3877587 c.921A>C synonymous_variant 0.75
rpoA 3877601 p.Gln303Glu missense_variant 0.75
rpoA 3877602 p.His302Gln missense_variant 0.75
rpoA 3877605 c.903G>C synonymous_variant 0.75
rpoA 3877611 p.Ile299Glu missense_variant 0.75
rpoA 3877617 c.891G>C synonymous_variant 0.75
rpoA 3877636 p.Gln291Ala missense_variant 0.9
rpoA 3877638 c.870T>C synonymous_variant 0.9
rpoA 3877656 p.Leu284Met missense_variant 0.9
rpoA 3877667 p.Ser281Ala missense_variant 0.9
rpoA 3877668 c.840A>G synonymous_variant 0.9
rpoA 3877671 p.Thr279Ser missense_variant 0.9
rpoA 3877674 c.834C>G synonymous_variant 0.9
rpoA 3877677 p.Ala277Gly missense_variant 0.9
rpoA 3877683 c.825G>C synonymous_variant 0.9
rpoA 3877686 c.822A>G synonymous_variant 0.9
rpoA 3877701 p.Val269Ile missense_variant 0.75
rpoA 3877704 c.804G>C synonymous_variant 0.75
rpoA 3877728 c.780C>G synonymous_variant 0.67
ddn 3987003 p.Arg54Ser missense_variant 0.25
ddn 3987017 c.174G>A synonymous_variant 0.25
clpC1 4038744 p.Thr654Val missense_variant 0.5
clpC1 4038746 c.1959C>T synonymous_variant 0.5
clpC1 4038756 p.Gly650Ser missense_variant 0.89
clpC1 4038764 c.1941C>G synonymous_variant 0.86
clpC1 4038767 c.1938G>A synonymous_variant 0.86
clpC1 4038773 c.1932T>C synonymous_variant 0.86
clpC1 4038782 p.Val641Ile missense_variant 0.86
clpC1 4038795 c.1909_1910delAGinsTC synonymous_variant 0.9
clpC1 4038801 p.Tyr635Phe missense_variant 0.86
clpC1 4038805 p.Ile634Leu missense_variant 0.86
clpC1 4038806 p.Glu633Asp missense_variant 0.86
clpC1 4038815 c.1890G>C synonymous_variant 0.87
clpC1 4038824 p.Ile627Val missense_variant 0.87
clpC1 4038845 c.1860G>C synonymous_variant 0.9
clpC1 4038854 p.Lys617Arg missense_variant 0.9
clpC1 4038860 c.1845G>C synonymous_variant 0.86
clpC1 4038863 c.1842G>C synonymous_variant 0.86
clpC1 4038878 c.1827A>G synonymous_variant 0.85
clpC1 4038899 c.1806C>G synonymous_variant 0.62
clpC1 4038905 c.1800A>C synonymous_variant 0.4
clpC1 4039125 p.Ala527Asp missense_variant 0.18
clpC1 4039513 p.Lys398Glu missense_variant 0.4
clpC1 4039691 c.1014G>C synonymous_variant 0.67
clpC1 4039714 p.Tyr331His missense_variant 0.88
clpC1 4039724 c.981A>G synonymous_variant 0.91
clpC1 4039730 c.975C>G synonymous_variant 0.91
clpC1 4039748 c.957G>C synonymous_variant 0.93
clpC1 4039751 c.954A>G synonymous_variant 0.93
clpC1 4039757 c.948A>G synonymous_variant 0.95
clpC1 4039766 c.939T>C synonymous_variant 0.95
clpC1 4039769 c.936C>G synonymous_variant 0.95
clpC1 4039773 p.Lys311Met missense_variant 0.95
clpC1 4039778 c.927A>G synonymous_variant 0.95
clpC1 4039781 c.924G>C synonymous_variant 0.95
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.95
clpC1 4039814 c.891C>G synonymous_variant 0.97
clpC1 4039817 c.888A>T synonymous_variant 0.97
clpC1 4039820 c.885T>G synonymous_variant 0.92
clpC1 4039823 c.882T>G synonymous_variant 0.94
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.89
clpC1 4039838 p.Leu289Ile missense_variant 0.93
clpC1 4039850 c.855T>C synonymous_variant 0.95
clpC1 4039865 c.840T>G synonymous_variant 0.94
clpC1 4039871 c.834C>G synonymous_variant 0.94
clpC1 4039875 p.Asn277Arg missense_variant 0.93
clpC1 4039898 c.807C>G synonymous_variant 0.87
clpC1 4039904 c.801A>G synonymous_variant 0.87
clpC1 4039916 c.789T>C synonymous_variant 0.89
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.88
clpC1 4039931 c.774T>C synonymous_variant 0.88
clpC1 4039934 c.771G>C synonymous_variant 0.88
clpC1 4039940 c.765G>C synonymous_variant 0.88
clpC1 4039943 c.762G>C synonymous_variant 0.88
clpC1 4039946 c.759A>C synonymous_variant 0.88
clpC1 4039949 c.756G>C synonymous_variant 0.88
clpC1 4039952 c.753T>C synonymous_variant 0.91
clpC1 4039960 p.Thr249Ser missense_variant 0.94
clpC1 4039977 p.Lys243Arg missense_variant 0.97
clpC1 4039988 c.717C>G synonymous_variant 0.98
clpC1 4039991 c.714G>C synonymous_variant 0.98
clpC1 4039994 p.Glu237Asp missense_variant 0.98
clpC1 4040001 p.His235Arg missense_variant 0.98
clpC1 4040003 p.Val234Asp missense_variant 0.98
clpC1 4040009 c.696C>G synonymous_variant 0.96
clpC1 4040015 c.690G>C synonymous_variant 0.96
clpC1 4040021 c.684A>C synonymous_variant 0.96
clpC1 4040024 c.681A>G synonymous_variant 0.96
clpC1 4040033 c.672G>C synonymous_variant 0.98
clpC1 4040063 c.642G>C synonymous_variant 0.95
clpC1 4040069 c.636G>C synonymous_variant 0.93
clpC1 4040087 c.618G>C synonymous_variant 0.9
clpC1 4040090 c.615T>C synonymous_variant 0.9
clpC1 4040108 c.597G>C synonymous_variant 0.83
clpC1 4040114 p.Ile197Met missense_variant 0.56
clpC1 4040117 c.588A>G synonymous_variant 0.33
clpC1 4040724 c.-20G>T upstream_gene_variant 0.4
embC 4240055 p.Gly65Cys missense_variant 0.4
embC 4240117 c.255C>T synonymous_variant 0.22
embC 4241998 c.2136G>A synonymous_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4243644 p.Ala138Ser missense_variant 0.5
embA 4245107 p.Phe625Leu missense_variant 0.5
embA 4245462 p.Asp744Asn missense_variant 0.4
embB 4247985 p.Thr491Asn missense_variant 0.5
embB 4248121 c.1608G>A synonymous_variant 0.29
embB 4249264 c.2751G>A synonymous_variant 0.67
aftB 4267647 p.Asp397Gly missense_variant 1.0
aftB 4267652 p.Met395Ile missense_variant 0.29
aftB 4268872 c.-36G>T upstream_gene_variant 0.25
ethA 4326184 c.1290C>A synonymous_variant 0.2
ethA 4326205 c.1269C>T synonymous_variant 0.22
ethR 4327285 c.-264A>T upstream_gene_variant 0.29
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0
gid 4408378 c.-176G>A upstream_gene_variant 0.18