EBG00000313339 - n.1881T>A
Drug resistance types
59 Sensitive
37 RR-TB
34 HR-TB
40 MDR-TB
20 Pre-XDR-TB
0 XDR-TB
90 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 24 |
| lineage4.8 | 9 |
| lineage3 | 15 |
| lineage4.3.4.2 | 1 |
| lineage4.9 | 97 |
| lineage2.2.1 | 27 |
| lineage4.1.2.1 | 7 |
| lineage4.3.4.2.1 | 10 |
| lineage4.4.1.1 | 3 |
| lineage4.3.3 | 5 |
| lineage1.1.1 | 1 |
| lineage4.1.1.3 | 5 |
| lineage4.6.2.2 | 2 |
| lineage3.1.1 | 1 |
| 8 | |
| lineage3.1.2 | 1 |
| lineage3.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.6.5 | 1 |
| lineage5.1.1 | 3 |
| La1.8.1 | 4 |
| lineage4.7 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.8.1 | 1 |
| lineage4.6 | 1 |
| lineage4.9;lineage1.1 | 1 |
| La1.2 | 1 |
| lineage4.9.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4.6.1.2 | 6 |
| La1.3 | 6 |
| lineage4.9;La1.3 | 3 |
| lineage1.2.2.2 | 1 |
| lineage6 | 1 |
| lineage2.2.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.8;lineage4.3.3 | 4 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 3 |
| lineage2 | 1 |
| lineage4.4.2 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage3.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.5 | 1 |
| lineage4;lineage2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 280 |
Geographic prevalence
Country level data for this variant is available for 11 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR228175 | Sensitive | lineage3 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR228180 | Sensitive | lineage3 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818904 | Other | lineage4.8 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4820290 | Other | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR4820030 | Other | lineage4.9 | None | SRR6045464 | Other | lineage4.1.1.3 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4819910 | Other | lineage4.9 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | SRR6046141 | Other | lineage4.9 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045053 | Other | None | SRR6046177 | Other | lineage3.1.2 | None | SRR6045713 | Sensitive | lineage3.1.3 | gb | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046497 | Other | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502477 | Sensitive | lineage5.1.1 | gh | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR7131121 | Other | lineage4.3.3 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496471 | Sensitive | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR036207 | Other | lineage4.9 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR1063855 | Other | lineage4 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796571 | Other | lineage4.9 | None | SRR7851312 | Other | La1.2 | None | ERR037504 | Other | lineage4.9.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR10796629 | Other | lineage4 | None | ERR1194808 | HR-TB | lineage2.2.1 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3439441 | Other | La1.8.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR386875 | MDR-TB | lineage4.6.1.2 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4800197 | HR-TB | None | ERR4796577 | MDR-TB | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR751345 | Other | lineage5.1.1 | None | ERR9787336 | Other | lineage6 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | None | SRR1175473 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR18003036 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR2100532 | Sensitive | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | SRR20632814 | Sensitive | lineage4 | None | SRR2100537 | Sensitive | lineage3 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | SRR21677886 | Sensitive | lineage4.9 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4815310 | Other | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR1750905 | Sensitive | lineage4.3.3 | za | ERR1750889 | Other | lineage4.4.1.1 | None | ERR1750896 | Sensitive | lineage2.2.1 | zw | ERR1750904 | Sensitive | lineage4.9.1 | za | ERR1750899 | Sensitive | lineage4.1.1.3 | zw | ERR4815550 | Other | lineage4 | None | ERR1750922 | Sensitive | lineage4.1.1.3 | za | SRR3675265 | Other | lineage4 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR1750931 | Sensitive | lineage4.1.2.1 | za | ERR4814976 | Other | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR2229197 | Sensitive | lineage4 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4816470 | Other | lineage3 | None | ERR4817109 | Other | lineage3 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817434 | Other | lineage3 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4816852 | Other | lineage4.9 | None |
|---|
