TB-Profiler result

Run: ERR4769550
Summary

Run ID: ERR4769550

Sample name:

Date: 01-04-2023 06:44:16

Number of reads: 141137

Percentage reads mapped: 10.29

Strain: lineage4.9;La1.3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.3 M.bovis None None 0.17
lineage4.9 Euro-American (H37Rv-like) T1 None 0.9
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 8829 c.1528T>C synonymous_variant 0.25
gyrA 8843 c.1542G>A synonymous_variant 0.25
gyrA 8852 c.1551T>C synonymous_variant 0.25
gyrA 8858 c.1557T>G synonymous_variant 0.25
gyrA 8867 c.1566A>G synonymous_variant 0.25
gyrA 8870 c.1569G>C synonymous_variant 0.29
gyrA 8873 c.1572A>T synonymous_variant 0.29
gyrA 8897 c.1596T>C synonymous_variant 0.29
gyrA 8903 c.1602T>C synonymous_variant 0.29
gyrA 8907 c.1606_1608delAGCinsTCG synonymous_variant 0.29
gyrA 8915 c.1614A>G synonymous_variant 0.33
gyrA 8933 c.1632G>T synonymous_variant 0.33
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760112 c.306T>C synonymous_variant 0.4
rpoB 760121 c.315T>A synonymous_variant 0.4
rpoB 760130 p.Asp108Glu missense_variant 0.4
rpoB 760138 c.333delA frameshift_variant 0.4
rpoB 760141 p.Pro112Leu missense_variant 0.4
rpoB 760144 p.Val113Asp missense_variant 0.4
rpoB 760145 c.340dupG frameshift_variant 0.4
rpoB 760172 c.366G>C synonymous_variant 0.7
rpoB 760181 c.375T>G synonymous_variant 0.7
rpoB 760184 c.378A>G synonymous_variant 0.7
rpoB 760185 c.379C>T synonymous_variant 0.7
rpoB 760199 c.393C>G synonymous_variant 0.7
rpoB 760220 c.414C>T synonymous_variant 0.62
rpoB 760235 c.429T>C synonymous_variant 0.71
rpoB 760244 c.438G>C synonymous_variant 0.57
rpoB 760253 c.447T>A synonymous_variant 0.62
rpoB 760256 c.450C>T synonymous_variant 0.62
rpoB 760274 p.Glu156Asp missense_variant 0.83
rpoB 760283 c.477G>C synonymous_variant 0.83
rpoB 760298 c.492G>C synonymous_variant 0.75
rpoB 760916 c.1110C>T synonymous_variant 0.67
rpoB 760919 c.1113C>T synonymous_variant 0.67
rpoB 760928 c.1122G>C synonymous_variant 0.8
rpoB 760940 c.1134G>C synonymous_variant 0.8
rpoB 760946 c.1140A>G synonymous_variant 1.0
rpoB 760958 c.1152G>C synonymous_variant 1.0
rpoB 760961 c.1155C>G synonymous_variant 1.0
rpoB 760965 p.Met387Leu missense_variant 1.0
rpoB 760970 c.1164G>C synonymous_variant 1.0
rpoB 760973 c.1167G>C synonymous_variant 1.0
rpoB 760982 c.1176G>T synonymous_variant 1.0
rpoB 760988 c.1182C>T synonymous_variant 1.0
rpoB 760991 c.1185G>T synonymous_variant 1.0
rpoB 760997 c.1191G>C synonymous_variant 1.0
rpoB 761006 c.1200C>G synonymous_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 1.0
rpoB 761021 c.1215G>A synonymous_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 1.0
rpoB 761030 c.1224G>T synonymous_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 1.0
rpoB 761051 c.1245G>T synonymous_variant 1.0
rpoB 761054 c.1248G>C synonymous_variant 1.0
rpoB 761057 c.1251G>C synonymous_variant 1.0
rpoB 761063 c.1257C>T synonymous_variant 1.0
rpoB 761071 p.Lys422Arg missense_variant 0.8
rpoB 761084 c.1278C>A synonymous_variant 0.67
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.67
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.67
rpoB 761102 c.1296A>G synonymous_variant 0.67
rpoB 761133 c.1327T>C synonymous_variant 0.8
rpoB 761138 c.1332C>G synonymous_variant 0.8
rpoB 761147 c.1341C>T synonymous_variant 0.75
rpoB 761150 c.1344A>T synonymous_variant 0.67
rpoB 761156 c.1350G>C synonymous_variant 0.67
rpoB 761159 c.1353G>C synonymous_variant 0.67
rpoB 761162 c.1356G>C synonymous_variant 0.67
rpoB 761165 c.1359G>C synonymous_variant 0.67
rpoB 761168 c.1362C>G synonymous_variant 0.67
rpoB 761171 c.1365C>T synonymous_variant 0.67
rpoB 761180 c.1374A>C synonymous_variant 0.7
rpoB 761189 c.1383T>C synonymous_variant 0.7
rpoB 761195 c.1389G>C synonymous_variant 0.67
rpoB 761198 c.1392G>C synonymous_variant 0.67
rpoB 761204 c.1398C>T synonymous_variant 0.67
rpoB 761213 c.1407G>T synonymous_variant 0.88
rpoB 761234 c.1428G>C synonymous_variant 0.71
rpoB 761249 c.1443A>G synonymous_variant 0.75
rpoB 761255 c.1449T>G synonymous_variant 0.75
rpoB 761258 c.1452G>A synonymous_variant 0.67
rpoB 761261 c.1455G>C synonymous_variant 0.6
rpoB 761264 c.1458C>G synonymous_variant 0.6
rpoB 761273 c.1467T>C synonymous_variant 0.6
rpoB 761282 c.1476C>T synonymous_variant 0.4
rpoB 761591 c.1785C>T synonymous_variant 0.29
rpoB 761594 c.1788C>A synonymous_variant 0.29
rpoB 761606 c.1800C>G synonymous_variant 0.29
rpoB 761834 c.2028T>G synonymous_variant 0.33
rpoB 761847 p.Cys681Arg missense_variant 0.43
rpoB 761852 c.2046C>G synonymous_variant 0.43
rpoB 761863 p.Ala686Glu missense_variant 0.43
rpoB 761867 c.2061C>A synonymous_variant 0.43
rpoB 761868 p.Asp688Gln missense_variant 0.43
rpoB 761873 c.2067A>T synonymous_variant 0.43
rpoB 761885 c.2079T>C synonymous_variant 0.43
rpoB 761891 c.2085G>T synonymous_variant 0.43
rpoB 761892 p.Ile696Leu missense_variant 0.43
rpoB 761906 c.2100C>T synonymous_variant 0.38
rpoB 761909 c.2103T>C synonymous_variant 0.57
rpoB 761912 c.2106T>C synonymous_variant 0.57
rpoB 761915 p.Asp703Glu missense_variant 0.43
rpoB 761916 p.Asp704Asn missense_variant 0.5
rpoB 761921 c.2115C>T synonymous_variant 0.5
rpoB 761943 c.2137C>T synonymous_variant 0.5
rpoB 761948 c.2142G>C synonymous_variant 0.62
rpoB 761951 c.2145G>C synonymous_variant 0.6
rpoB 761954 c.2148C>G synonymous_variant 0.5
rpoB 761969 c.2163G>A synonymous_variant 0.57
rpoB 761996 c.2190C>T synonymous_variant 0.55
rpoB 762002 c.2196C>G synonymous_variant 0.55
rpoB 762003 p.Asn733Gln missense_variant 0.64
rpoB 762008 c.2202C>T synonymous_variant 0.55
rpoB 762011 c.2205G>C synonymous_variant 0.55
rpoB 762014 c.2208C>G synonymous_variant 0.64
rpoB 762026 c.2220G>C synonymous_variant 0.64
rpoB 762029 c.2223C>G synonymous_variant 0.55
rpoB 762038 c.2232C>T synonymous_variant 0.58
rpoB 762053 c.2247T>C synonymous_variant 0.55
rpoB 762065 c.2259T>C synonymous_variant 0.5
rpoB 762080 c.2274G>C synonymous_variant 0.46
rpoB 762086 c.2280G>C synonymous_variant 0.5
rpoB 762092 c.2286G>A synonymous_variant 0.5
rpoB 762098 c.2292C>T synonymous_variant 0.54
rpoB 762114 p.Ile770Val missense_variant 0.45
rpoB 762128 c.2322G>C synonymous_variant 0.4
rpoB 762140 c.2334G>C synonymous_variant 0.4
rpoB 762143 c.2337T>C synonymous_variant 0.4
rpoB 762149 c.2343G>C synonymous_variant 0.44
rpoB 762156 p.Val784Ile missense_variant 0.4
rpoB 762161 c.2355C>T synonymous_variant 0.4
rpoB 762179 c.2373C>T synonymous_variant 0.33
rpoB 762185 c.2379G>C synonymous_variant 0.33
rpoB 762189 p.Ile795Val missense_variant 0.33
rpoB 762200 c.2394C>A synonymous_variant 0.33
rpoB 762209 c.2403C>G synonymous_variant 0.25
rpoB 762218 c.2412T>C synonymous_variant 0.33
rpoB 762489 p.Val895Gln missense_variant 0.29
rpoC 762494 c.-876G>A upstream_gene_variant 0.29
rpoC 762509 c.-861T>C upstream_gene_variant 0.25
rpoB 762510 p.Ala902Ser missense_variant 0.25
rpoC 762521 c.-849C>G upstream_gene_variant 0.33
rpoC 762524 c.-846G>T upstream_gene_variant 0.33
rpoC 762527 c.-843G>C upstream_gene_variant 0.25
rpoC 762533 c.-837T>C upstream_gene_variant 0.25
rpoC 762536 c.-834T>C upstream_gene_variant 0.22
rpoC 762545 c.-825C>G upstream_gene_variant 0.2
rpoC 762554 c.-816G>C upstream_gene_variant 0.2
rpoC 762560 c.-810A>T upstream_gene_variant 0.18
rpoC 762563 c.-807G>T upstream_gene_variant 0.18
rpoC 762575 c.-795C>T upstream_gene_variant 0.17
rpoB 762579 p.Ile925Val missense_variant 0.15
rpoB 762942 p.Ile1046Val missense_variant 0.25
rpoC 762959 c.-411G>C upstream_gene_variant 0.33
rpoC 762971 c.-399G>C upstream_gene_variant 0.43
rpoC 762989 c.-381G>C upstream_gene_variant 0.5
rpoC 762995 c.-375G>T upstream_gene_variant 0.4
rpoC 763013 c.-357C>G upstream_gene_variant 0.29
rpoC 763028 c.-342T>C upstream_gene_variant 0.4
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>T upstream_gene_variant 0.6
rpoC 763040 c.-330C>G upstream_gene_variant 0.75
rpoC 763049 c.-321G>A upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763067 c.-303C>T upstream_gene_variant 0.67
rpoC 763070 c.-300T>C upstream_gene_variant 0.67
rpoB 763074 p.Thr1090Val missense_variant 0.5
rpoC 763082 c.-288C>T upstream_gene_variant 0.5
rpoC 763085 c.-285C>A upstream_gene_variant 0.5
rpoC 763100 c.-270G>A upstream_gene_variant 0.5
rpoC 763103 c.-267G>C upstream_gene_variant 0.5
rpoC 763363 c.-7G>A upstream_gene_variant 0.33
rpoC 763405 c.36C>T synonymous_variant 0.55
rpoC 763408 c.39T>C synonymous_variant 0.55
rpoC 763409 c.40_42delCTTinsTTG synonymous_variant 0.55
rpoC 763414 c.45T>C synonymous_variant 0.55
rpoC 763416 p.Thr16Ser missense_variant 0.55
rpoC 763420 c.51G>A synonymous_variant 0.55
rpoC 763430 c.61_63delAGGinsCGC synonymous_variant 0.55
rpoC 763433 p.Gln22Asn missense_variant 0.55
rpoC 763444 c.75T>C synonymous_variant 0.71
rpoC 763456 c.87A>G synonymous_variant 0.73
rpoC 763468 c.99G>C synonymous_variant 0.8
rpoC 763486 c.117T>C synonymous_variant 0.86
rpoC 763492 c.123G>C synonymous_variant 0.86
rpoC 763507 c.138G>C synonymous_variant 0.88
rpoC 763528 c.159G>C synonymous_variant 0.83
rpoC 763531 c.162G>C synonymous_variant 0.82
rpoC 763537 c.168C>G synonymous_variant 0.75
rpoC 763546 c.177A>G synonymous_variant 0.85
rpoC 763558 c.189C>T synonymous_variant 0.92
rpoC 763570 c.201G>T synonymous_variant 0.92
rpoC 763573 c.204G>C synonymous_variant 0.92
rpoC 763594 c.225C>T synonymous_variant 0.78
rpoC 763603 c.234C>T synonymous_variant 0.75
rpoC 763615 c.246G>C synonymous_variant 0.56
rpoC 763618 c.249C>T synonymous_variant 0.5
rpoC 763630 c.261G>T synonymous_variant 0.46
rpoC 763642 c.273G>C synonymous_variant 0.46
rpoC 763648 c.279C>T synonymous_variant 0.42
rpoC 763657 c.288G>A synonymous_variant 0.36
rpoC 763660 c.291T>G synonymous_variant 0.3
rpoC 763666 c.297G>A synonymous_variant 0.3
rpoC 763669 c.300C>G synonymous_variant 0.3
rpoC 763675 c.306C>G synonymous_variant 0.3
rpoC 764020 c.651C>T synonymous_variant 0.33
rpoC 764023 c.654G>T synonymous_variant 0.33
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.33
rpoC 764029 p.Glu220Asp missense_variant 0.33
rpoC 764032 p.Asp221Glu missense_variant 0.33
rpoC 764040 p.Ser224Thr missense_variant 0.33
rpoC 764044 c.675T>C synonymous_variant 0.33
rpoC 764056 c.687_688insA frameshift_variant 0.33
rpoC 764071 c.702G>C synonymous_variant 0.33
rpoC 764075 p.Val236Ile missense_variant 0.4
rpoC 764083 c.714A>G synonymous_variant 0.4
rpoC 764084 p.Asn239Leu missense_variant 0.4
rpoC 764089 c.720C>G synonymous_variant 0.4
rpoC 764098 c.729A>G synonymous_variant 0.4
rpoC 764101 c.732C>G synonymous_variant 0.4
rpoC 764110 c.741C>T synonymous_variant 0.29
rpoC 764227 c.858G>C synonymous_variant 0.25
rpoC 764239 c.870T>G synonymous_variant 0.25
rpoC 764242 c.873C>T synonymous_variant 0.25
rpoC 764245 c.876C>A synonymous_variant 0.25
rpoC 764254 c.885G>C synonymous_variant 0.29
rpoC 764257 c.888G>C synonymous_variant 0.33
rpoC 764272 c.903G>A synonymous_variant 0.33
rpoC 764274 c.908_909insGACCA frameshift_variant 0.33
rpoC 764279 c.911_915delAGTCG frameshift_variant 0.33
rpoC 764308 c.939G>C synonymous_variant 0.33
rpoC 764312 p.Asp315Asn missense_variant 0.29
rpoC 764317 c.948C>T synonymous_variant 0.29
rpoC 764320 c.951C>T synonymous_variant 0.29
rpoC 764341 c.972G>T synonymous_variant 0.38
rpoC 764353 c.984G>T synonymous_variant 0.38
rpoC 764365 c.996C>T synonymous_variant 0.25
rpoC 764368 c.999C>A synonymous_variant 0.29
rpoC 764387 c.1018T>C synonymous_variant 0.29
rpoC 764461 c.1092A>G synonymous_variant 0.33
rpoC 764497 c.1128A>G synonymous_variant 0.44
rpoC 764500 c.1131C>G synonymous_variant 0.44
rpoC 764503 c.1134G>C synonymous_variant 0.44
rpoC 764509 c.1140G>C synonymous_variant 0.44
rpoC 764521 c.1152T>C synonymous_variant 0.5
rpoC 764524 c.1155C>T synonymous_variant 0.4
rpoC 764527 c.1158C>T synonymous_variant 0.4
rpoC 764530 c.1161C>T synonymous_variant 0.36
rpoC 764533 c.1164C>A synonymous_variant 0.4
rpoC 764536 c.1167G>T synonymous_variant 0.45
rpoC 764539 c.1170C>G synonymous_variant 0.42
rpoC 764548 c.1179G>A synonymous_variant 0.42
rpoC 764554 c.1185C>T synonymous_variant 0.38
rpoC 764560 c.1191T>C synonymous_variant 0.5
rpoC 764566 c.1197C>G synonymous_variant 0.42
rpoC 764572 c.1203G>C synonymous_variant 0.5
rpoC 764575 c.1206T>G synonymous_variant 0.55
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.55
rpoC 764602 c.1233C>T synonymous_variant 0.58
rpoC 764605 c.1236G>C synonymous_variant 0.58
rpoC 764611 c.1242G>T synonymous_variant 0.44
rpoC 764626 c.1257C>T synonymous_variant 0.33
rpoC 764632 c.1263T>C synonymous_variant 0.44
rpoC 764647 c.1278C>T synonymous_variant 0.43
rpoC 764650 c.1281G>T synonymous_variant 0.57
rpoC 764653 c.1284G>C synonymous_variant 0.43
rpoC 764662 c.1293G>C synonymous_variant 0.6
rpoC 764668 c.1299C>T synonymous_variant 0.5
rpoC 764671 c.1302G>T synonymous_variant 0.5
rpoC 764692 c.1323C>T synonymous_variant 0.29
rpoC 764713 c.1344G>T synonymous_variant 0.29
rpoC 764716 c.1347G>C synonymous_variant 0.29
rpoC 764746 c.1377G>T synonymous_variant 0.44
rpoC 764752 c.1383G>C synonymous_variant 0.4
rpoC 764755 c.1386C>T synonymous_variant 0.4
rpoC 764758 c.1389C>G synonymous_variant 0.4
rpoC 764764 c.1395T>C synonymous_variant 0.4
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.33
rpoC 764785 c.1416C>A synonymous_variant 0.27
rpoC 764797 c.1428G>C synonymous_variant 0.27
rpoC 764804 p.Gln479Lys missense_variant 0.27
rpoC 764810 p.Pro481Val missense_variant 0.27
rpoC 764815 c.1446A>G synonymous_variant 0.27
rpoC 764824 c.1455T>C synonymous_variant 0.27
rpoC 764827 c.1458G>C synonymous_variant 0.36
rpoC 764854 c.1485G>C synonymous_variant 0.46
rpoC 764858 c.1489T>C synonymous_variant 0.46
rpoC 764863 c.1494G>C synonymous_variant 0.46
rpoC 764869 c.1500C>T synonymous_variant 0.46
rpoC 764875 c.1506C>T synonymous_variant 0.45
rpoC 764878 c.1509C>G synonymous_variant 0.45
rpoC 764887 c.1518G>T synonymous_variant 0.33
rpoC 764888 c.1519T>C synonymous_variant 0.38
rpoC 764902 c.1533C>A synonymous_variant 0.38
rpoC 764911 c.1542A>G synonymous_variant 0.33
rpoC 764912 p.Met515Gln missense_variant 0.33
rpoC 764917 c.1548G>C synonymous_variant 0.3
rpoC 764920 c.1551G>C synonymous_variant 0.3
rpoC 764923 c.1554A>G synonymous_variant 0.3
rpoC 764941 c.1572G>C synonymous_variant 0.43
rpoC 764948 c.1579T>C synonymous_variant 0.43
rpoC 764962 c.1593G>C synonymous_variant 0.33
rpoC 764968 c.1599T>C synonymous_variant 0.25
rpoC 766280 p.Ser971Gly missense_variant 0.5
rpoC 766291 c.2922G>T synonymous_variant 0.67
rpoC 766297 c.2928G>C synonymous_variant 0.67
rpoC 766300 c.2931C>T synonymous_variant 0.67
rpoC 766309 c.2940G>C synonymous_variant 1.0
rpoC 766312 c.2943T>C synonymous_variant 1.0
rpoC 766315 c.2946C>G synonymous_variant 1.0
rpoC 766348 c.2979A>G synonymous_variant 0.67
rpoC 766351 c.2982C>T synonymous_variant 0.67
rpoC 766357 c.2988C>T synonymous_variant 0.67
rpoC 766363 c.2994G>C synonymous_variant 0.6
rpoC 766369 c.3000C>A synonymous_variant 0.5
rpoC 766375 c.3006C>G synonymous_variant 0.43
rpoC 766381 c.3012C>T synonymous_variant 0.38
rpoC 766384 c.3015A>G synonymous_variant 0.38
rpoC 766390 c.3021C>T synonymous_variant 0.38
rpoC 766408 c.3039C>T synonymous_variant 0.22
rpoC 766426 c.3057C>T synonymous_variant 0.22
rpoC 766447 c.3078T>C synonymous_variant 0.2
rpoC 766510 c.3141C>G synonymous_variant 0.29
rpoC 766522 c.3153C>T synonymous_variant 0.4
rpoC 766528 c.3159T>A synonymous_variant 0.4
rpoC 766530 p.Arg1054Gln missense_variant 0.4
rpoC 766537 c.3168G>A synonymous_variant 0.67
rpoC 766546 p.Glu1059Asp missense_variant 0.67
rpoC 766549 c.3180G>T synonymous_variant 0.67
rpoC 766573 c.3204T>G synonymous_variant 0.67
rpoC 766945 c.3576A>C synonymous_variant 0.25
rpoC 766948 c.3579G>T synonymous_variant 0.33
rpoC 766951 c.3582G>C synonymous_variant 0.33
rpoC 766960 c.3591C>T synonymous_variant 0.33
rpoC 766963 c.3594T>C synonymous_variant 0.33
rpoC 766972 c.3603G>A synonymous_variant 0.5
rpoC 766990 c.3621G>C synonymous_variant 0.59
rpoC 766996 c.3627C>T synonymous_variant 0.63
rpoC 767014 c.3645G>C synonymous_variant 0.65
rpoC 767017 c.3648C>G synonymous_variant 0.65
rpoC 767020 c.3651C>G synonymous_variant 0.65
rpoC 767023 c.3654C>T synonymous_variant 0.65
rpoC 767035 c.3666G>C synonymous_variant 0.7
rpoC 767041 c.3672G>A synonymous_variant 0.7
rpoC 767062 c.3693C>T synonymous_variant 0.82
rpoC 767065 c.3696G>C synonymous_variant 0.82
rpoC 767066 c.3697C>T synonymous_variant 0.82
rpoC 767074 c.3705T>C synonymous_variant 0.82
rpoC 767080 c.3711G>T synonymous_variant 0.82
rpoC 767093 c.3724_3726delAGCinsTCG synonymous_variant 0.85
rpoC 767098 c.3729T>C synonymous_variant 0.85
rpoC 767104 c.3735C>G synonymous_variant 0.85
rpoC 767106 p.Asn1246Ile missense_variant 0.85
rpoC 767122 c.3753C>T synonymous_variant 0.91
rpoC 767125 c.3756G>C synonymous_variant 0.91
rpoC 767146 c.3777G>T synonymous_variant 0.75
rpoC 767167 c.3798C>T synonymous_variant 0.75
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781559 c.-1G>A upstream_gene_variant 0.57
rpsL 781572 p.Gln5Asn missense_variant 0.67
rpsL 781595 c.36T>C synonymous_variant 0.67
rpsL 781598 c.39G>C synonymous_variant 0.67
rpsL 781606 p.Ile16Thr missense_variant 0.8
rpsL 781608 p.Ser17Ala missense_variant 0.8
rpsL 781622 c.63C>G synonymous_variant 0.8
rpsL 781625 c.66G>A synonymous_variant 0.8
rpsL 781628 c.69T>C synonymous_variant 0.8
rpsL 781631 c.72G>C synonymous_variant 0.67
rpsL 781655 c.96T>C synonymous_variant 0.67
rpsL 781658 c.99A>G synonymous_variant 0.67
rpsL 781664 c.105C>T synonymous_variant 0.67
rpsL 781682 c.123T>C synonymous_variant 0.57
rpsL 781685 c.126G>C synonymous_variant 0.57
rpsL 781700 c.141G>C synonymous_variant 0.33
rpsL 781781 c.222G>T synonymous_variant 0.29
rpsL 781793 c.234G>C synonymous_variant 0.38
rpsL 781802 c.243G>C synonymous_variant 0.38
rpsL 781805 c.246G>C synonymous_variant 0.38
rpsL 781808 c.249C>T synonymous_variant 0.38
rpsL 781814 c.255C>T synonymous_variant 0.38
rpsL 781817 c.258G>T synonymous_variant 0.43
rpsL 781829 c.270G>C synonymous_variant 0.5
rpsL 781832 c.273T>G synonymous_variant 0.5
rpsL 781838 c.279G>C synonymous_variant 0.43
rpsL 781841 c.282C>T synonymous_variant 0.43
rpsL 781850 c.291C>T synonymous_variant 0.5
rpsL 781859 c.300T>C synonymous_variant 0.5
rpsL 781862 c.303G>C synonymous_variant 0.5
rpsL 781865 c.306G>C synonymous_variant 0.5
rpsL 781868 c.309T>C synonymous_variant 0.5
rpsL 781871 c.312G>C synonymous_variant 0.5
rpsL 781884 p.Asn109Gly missense_variant 0.5
rpsL 781892 c.333A>G synonymous_variant 0.43
rpsL 781907 c.348T>C synonymous_variant 0.43
rplC 800618 c.-191T>C upstream_gene_variant 0.5
rplC 800630 c.-179G>A upstream_gene_variant 0.75
rplC 800648 c.-161A>G upstream_gene_variant 0.6
rplC 800654 c.-155T>C upstream_gene_variant 0.5
rplC 800672 c.-137G>C upstream_gene_variant 0.43
rplC 800690 c.-119C>T upstream_gene_variant 0.43
rplC 800693 c.-116A>T upstream_gene_variant 0.43
rplC 800703 c.-106T>C upstream_gene_variant 0.43
rplC 800714 c.-95C>T upstream_gene_variant 0.43
rplC 800715 c.-94A>C upstream_gene_variant 0.43
rplC 800720 c.-89T>C upstream_gene_variant 0.43
rplC 800723 c.-86C>G upstream_gene_variant 0.43
rplC 800735 c.-74C>G upstream_gene_variant 0.43
rplC 800771 c.-38C>T upstream_gene_variant 0.4
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1304610 c.1680C>G synonymous_variant 0.75
fbiC 1304613 c.1683T>C synonymous_variant 0.75
fbiC 1304619 c.1689G>A synonymous_variant 0.75
fbiC 1304625 c.1695C>T synonymous_variant 0.75
fbiC 1304634 c.1704C>G synonymous_variant 0.75
fbiC 1304640 c.1710A>C synonymous_variant 0.8
fbiC 1304658 c.1728C>G synonymous_variant 0.67
fbiC 1304660 p.Tyr577Phe missense_variant 0.67
fbiC 1304662 p.Ser578Thr missense_variant 0.67
fbiC 1304671 c.1742delT frameshift_variant 0.8
fbiC 1304674 p.Gly582Arg missense_variant 0.8
fbiC 1304677 c.1747_1748insC frameshift_variant 0.8
fbiC 1304691 c.1761G>T synonymous_variant 0.8
fbiC 1304694 c.1764A>G synonymous_variant 0.75
fbiC 1304700 c.1770G>A synonymous_variant 0.6
fbiC 1304703 c.1773C>G synonymous_variant 0.6
fbiC 1304715 c.1785G>C synonymous_variant 0.5
fbiC 1304718 c.1788C>A synonymous_variant 0.5
fbiC 1304724 c.1794A>G synonymous_variant 0.5
fbiC 1304727 c.1797A>G synonymous_variant 0.5
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.6
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.6
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.6
rrs 1471925 n.81delC non_coding_transcript_exon_variant 0.6
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.6
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.6
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.6
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.6
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.83
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.88
rrs 1472030 n.185G>C non_coding_transcript_exon_variant 0.88
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.88
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 0.88
rrs 1472033 n.188A>T non_coding_transcript_exon_variant 0.88
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.88
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.78
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.78
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.78
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.78
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.78
rrs 1472057 n.212C>A non_coding_transcript_exon_variant 0.78
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.78
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.83
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.83
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.73
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.91
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.87
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.91
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.97
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.97
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.95
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.95
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.86
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.84
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.84
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.93
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.88
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.78
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.78
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.78
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.78
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.91
rrs 1472414 n.569C>T non_coding_transcript_exon_variant 0.86
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.85
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.84
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.84
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.87
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.87
rrs 1472449 n.604C>A non_coding_transcript_exon_variant 0.87
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.87
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.87
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.87
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.87
rrs 1472463 n.618G>T non_coding_transcript_exon_variant 0.87
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.87
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.87
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.9
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.95
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.92
rrs 1472599 n.754G>A non_coding_transcript_exon_variant 0.94
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.93
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.89
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.93
rrs 1472672 n.830delT non_coding_transcript_exon_variant 0.98
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.96
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.96
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.96
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.98
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.94
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.83
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.83
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.83
rrs 1472856 n.1012_1015delAGGC non_coding_transcript_exon_variant 0.83
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.75
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.75
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.75
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.75
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.82
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.82
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.82
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.85
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.85
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.87
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.9
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.88
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.88
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.88
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.88
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.88
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.86
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.87
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.87
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.88
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.97
rrs 1473282 n.1437C>T non_coding_transcript_exon_variant 0.88
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.96
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.4
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.79
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.73
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.85
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.85
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.85
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.88
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.96
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.96
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.96
rrl 1473830 n.173T>C non_coding_transcript_exon_variant 0.96
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.93
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.93
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.93
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.86
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.9
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.86
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.81
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.81
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.77
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.77
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.67
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.67
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.83
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.73
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.73
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.73
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.79
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 0.79
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.84
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.8
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.79
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.79
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.79
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.8
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.82
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.82
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.84
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.84
rrl 1474288 n.631C>T non_coding_transcript_exon_variant 0.75
rrl 1474289 n.633_644delTTTTCCTCTCCG non_coding_transcript_exon_variant 0.71
rrl 1474305 n.648G>C non_coding_transcript_exon_variant 0.71
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.83
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.83
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.83
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.84
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.69
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.67
rrl 1474414 n.757C>T non_coding_transcript_exon_variant 0.67
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.73
rrl 1474450 n.793T>C non_coding_transcript_exon_variant 0.75
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.78
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.83
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.81
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.82
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.83
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.83
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.86
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.92
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.9
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.8
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.78
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.75
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.67
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.67
rrl 1474662 n.1005C>T non_coding_transcript_exon_variant 0.57
rrl 1474664 n.1007G>T non_coding_transcript_exon_variant 0.5
rrl 1474666 n.1009T>G non_coding_transcript_exon_variant 0.5
rrl 1474670 n.1013C>G non_coding_transcript_exon_variant 0.5
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.5
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.5
rrl 1474679 n.1022G>C non_coding_transcript_exon_variant 0.5
rrl 1474684 n.1027T>C non_coding_transcript_exon_variant 0.5
rrl 1474687 n.1030C>A non_coding_transcript_exon_variant 0.43
rrl 1474688 n.1031G>A non_coding_transcript_exon_variant 0.43
rrl 1474708 n.1052dupG non_coding_transcript_exon_variant 0.56
rrl 1474711 n.1054_1055insA non_coding_transcript_exon_variant 0.5
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.56
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.56
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.5
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.55
rrl 1474740 n.1083G>C non_coding_transcript_exon_variant 0.5
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 0.54
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.54
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.54
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.59
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.73
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.78
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.68
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.73
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.76
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.83
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.77
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.81
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.84
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.94
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.94
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.67
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.64
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.6
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.64
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.64
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.64
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.69
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.69
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.75
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.75
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.71
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.71
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.71
rrl 1475144 n.1487G>A non_coding_transcript_exon_variant 0.62
rrl 1475163 n.1506T>C non_coding_transcript_exon_variant 0.6
rrl 1475200 n.1543T>A non_coding_transcript_exon_variant 0.33
rrl 1475414 n.1757G>C non_coding_transcript_exon_variant 0.75
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.8
rrl 1475422 n.1765A>G non_coding_transcript_exon_variant 0.8
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.92
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.88
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.91
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.91
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.91
rrl 1475481 n.1824C>T non_coding_transcript_exon_variant 0.91
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.91
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.88
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.88
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.88
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.88
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.6
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.8
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.91
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.82
rrl 1475761 n.2104C>T non_coding_transcript_exon_variant 0.8
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.8
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.8
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.8
rrl 1475767 n.2110G>A non_coding_transcript_exon_variant 0.78
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.78
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.81
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.87
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.89
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.91
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.97
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.95
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.95
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.89
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.93
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.93
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.93
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.93
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.93
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.93
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.93
rrl 1476080 n.2423T>A non_coding_transcript_exon_variant 0.95
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.95
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.95
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.95
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.92
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.92
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.92
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.93
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.93
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.91
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.94
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.94
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.94
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.92
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.9
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.92
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.87
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.89
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.9
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.94
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.93
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.92
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.87
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.87
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.85
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.86
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.89
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.87
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.87
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.84
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.84
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.82
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.83
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.86
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.8
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.7
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.54
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.78
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.78
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.69
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.69
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.69
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.67
rrl 1476689 n.3032A>C non_coding_transcript_exon_variant 0.6
rrl 1476692 n.3035T>C non_coding_transcript_exon_variant 0.5
rrl 1476694 n.3037G>A non_coding_transcript_exon_variant 0.5
rrl 1476695 n.3038T>G non_coding_transcript_exon_variant 0.57
rrl 1476699 n.3042A>G non_coding_transcript_exon_variant 0.57
rrl 1476710 n.3053C>G non_coding_transcript_exon_variant 0.4
rrl 1476728 n.3071T>C non_coding_transcript_exon_variant 1.0
rpsA 1833664 c.123C>A synonymous_variant 0.33
rpsA 1833676 c.135A>G synonymous_variant 0.33
rpsA 1833679 c.138G>C synonymous_variant 0.33
rpsA 1833685 c.144G>C synonymous_variant 0.33
rpsA 1833694 c.153G>T synonymous_variant 0.29
rpsA 1833697 c.156C>G synonymous_variant 0.29
rpsA 1833709 c.168C>T synonymous_variant 0.33
rpsA 1833727 c.186G>C synonymous_variant 0.29
rpsA 1833733 c.192C>T synonymous_variant 0.29
rpsA 1833734 p.Ala65Ser missense_variant 0.29
rpsA 1833739 c.198C>T synonymous_variant 0.33
rpsA 1833742 c.201A>G synonymous_variant 0.33
rpsA 1833745 c.204G>C synonymous_variant 0.5
rpsA 1833772 c.231C>T synonymous_variant 0.6
rpsA 1833781 c.240T>C synonymous_variant 0.6
rpsA 1833787 c.246C>G synonymous_variant 0.55
rpsA 1833790 c.249T>A synonymous_variant 0.36
rpsA 1833793 c.252C>T synonymous_variant 0.36
rpsA 1833795 p.Glu85Ala missense_variant 0.36
rpsA 1833802 c.261A>G synonymous_variant 0.36
rpsA 1833805 c.264C>T synonymous_variant 0.36
rpsA 1833808 c.267G>C synonymous_variant 0.36
rpsA 1833811 c.270G>C synonymous_variant 0.45
rpsA 1833832 c.291G>A synonymous_variant 0.5
rpsA 1833835 c.294C>T synonymous_variant 0.5
rpsA 1833838 c.297G>A synonymous_variant 0.5
rpsA 1833841 c.300C>G synonymous_variant 0.5
rpsA 1833847 c.306C>G synonymous_variant 0.55
rpsA 1833850 c.309C>G synonymous_variant 0.55
rpsA 1833856 c.315A>G synonymous_variant 0.55
rpsA 1833862 c.321G>T synonymous_variant 0.54
rpsA 1833894 p.Ala118Glu missense_variant 0.5
rpsA 1833928 c.387G>C synonymous_variant 0.4
rpsA 1833949 c.408T>C synonymous_variant 0.57
rpsA 1833955 c.414G>C synonymous_variant 0.57
rpsA 1833961 c.420C>T synonymous_variant 0.67
rpsA 1833973 c.432G>T synonymous_variant 0.4
rpsA 1833976 c.435C>T synonymous_variant 0.4
rpsA 1833979 c.438T>C synonymous_variant 0.33
rpsA 1833985 c.444G>C synonymous_variant 0.33
rpsA 1833991 c.450C>T synonymous_variant 0.33
rpsA 1833997 c.456G>C synonymous_variant 0.33
rpsA 1834000 c.459G>C synonymous_variant 0.33
rpsA 1834003 c.462G>A synonymous_variant 0.33
rpsA 1834009 c.468C>T synonymous_variant 0.33
rpsA 1834012 c.471G>C synonymous_variant 0.4
rpsA 1834015 c.474G>C synonymous_variant 0.4
rpsA 1834024 c.483G>C synonymous_variant 0.4
rpsA 1834030 c.489C>G synonymous_variant 0.4
rpsA 1834034 p.Ile165Val missense_variant 0.4
rpsA 1834387 c.846C>T synonymous_variant 0.29
rpsA 1834396 c.855G>T synonymous_variant 0.38
rpsA 1834399 p.His286Gln missense_variant 0.38
rpsA 1834411 c.870T>G synonymous_variant 0.38
rpsA 1834417 c.876G>C synonymous_variant 0.38
rpsA 1834435 c.894G>C synonymous_variant 0.44
rpsA 1834447 c.906C>G synonymous_variant 0.56
rpsA 1834451 c.910T>C synonymous_variant 0.56
rpsA 1834474 c.933C>G synonymous_variant 0.67
rpsA 1834483 c.942G>A synonymous_variant 0.73
rpsA 1834489 c.948T>A synonymous_variant 0.73
rpsA 1834495 c.954G>A synonymous_variant 0.75
rpsA 1834501 c.960G>C synonymous_variant 0.82
rpsA 1834504 c.963G>T synonymous_variant 0.82
rpsA 1834513 c.972C>G synonymous_variant 0.8
rpsA 1834519 c.978G>C synonymous_variant 0.88
rpsA 1834522 c.981C>T synonymous_variant 0.88
rpsA 1834528 c.987T>C synonymous_variant 0.88
rpsA 1834540 c.999G>T synonymous_variant 0.88
rpsA 1834543 c.1002C>G synonymous_variant 0.86
rpsA 1834546 c.1005T>C synonymous_variant 0.86
rpsA 1834552 c.1011G>T synonymous_variant 0.86
rpsA 1834555 c.1014T>C synonymous_variant 0.86
rpsA 1834557 p.Ala339Gly missense_variant 0.86
rpsA 1834570 c.1029C>T synonymous_variant 0.86
rpsA 1834573 c.1032G>A synonymous_variant 0.83
rpsA 1834574 p.Met345Leu missense_variant 1.0
rpsA 1834600 c.1059G>C synonymous_variant 0.71
rpsA 1834606 c.1065C>T synonymous_variant 0.6
rpsA 1834612 c.1071G>T synonymous_variant 0.6
rpsA 1834619 c.1078T>C synonymous_variant 0.4
rpsA 1834627 c.1086C>G synonymous_variant 0.4
rpsA 1834633 c.1092A>G synonymous_variant 0.4
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156465 c.-354C>T upstream_gene_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
ahpC 2726597 c.405C>G synonymous_variant 0.4
ahpC 2726600 c.408T>C synonymous_variant 0.33
ahpC 2726636 c.444G>C synonymous_variant 0.5
ahpC 2726638 p.Ala149Val missense_variant 0.5
ahpC 2726642 c.450C>A synonymous_variant 0.5
ahpC 2726651 c.459G>C synonymous_variant 0.5
ahpC 2726654 c.462G>C synonymous_variant 0.5
ahpC 2726657 c.465A>C synonymous_variant 0.5
ahpC 2726660 c.468C>T synonymous_variant 0.5
ahpC 2726669 c.477T>C synonymous_variant 0.5
ahpC 2726675 c.483A>T synonymous_variant 0.5
ahpC 2726678 c.486G>C synonymous_variant 0.5
ahpC 2726681 c.489A>C synonymous_variant 0.5
ahpC 2726684 c.492G>C synonymous_variant 0.5
ahpC 2726693 c.501C>T synonymous_variant 0.5
ahpC 2726700 c.508_509delTCinsAG synonymous_variant 0.5
thyA 3073863 c.609T>C synonymous_variant 0.4
thyA 3073874 p.Ile200Val missense_variant 0.5
thyA 3073891 p.Leu194Ser missense_variant 0.4
thyA 3073893 c.578_579insA frameshift_variant 0.4
thyA 3073902 p.Ala190Gln missense_variant 0.4
thyA 3073916 p.His186Asn missense_variant 0.33
thyA 3073925 c.547T>C synonymous_variant 0.33
thyA 3073929 c.543T>C synonymous_variant 0.33
thyA 3073950 c.522G>T synonymous_variant 0.29
thyA 3073953 c.519T>C synonymous_variant 0.29
thyA 3073956 c.516G>C synonymous_variant 0.29
thyA 3073959 c.513T>C synonymous_variant 0.33
thyA 3073964 p.Leu170Met missense_variant 0.29
thyA 3073977 c.495A>G synonymous_variant 0.25
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3474780 c.774C>T synonymous_variant 0.29
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3878091 c.417C>A synonymous_variant 0.4
rpoA 3878102 p.Val136Ile missense_variant 0.43
rpoA 3878103 c.405A>G synonymous_variant 0.43
rpoA 3878112 c.396C>A synonymous_variant 0.6
rpoA 3878118 c.390T>C synonymous_variant 0.6
rpoA 3878127 c.381G>C synonymous_variant 0.5
rpoA 3878141 p.Met123Leu missense_variant 0.5
rpoA 3878142 p.Gly122Asp missense_variant 0.5
rpoA 3878145 c.363C>T synonymous_variant 0.5
rpoA 3878153 p.His119Asn missense_variant 0.6
rpoA 3878166 c.342C>A synonymous_variant 0.6
rpoA 3878172 c.336G>C synonymous_variant 0.6
rpoA 3878187 c.321C>A synonymous_variant 0.6
rpoA 3878190 c.318C>T synonymous_variant 0.6
rpoA 3878196 p.Glu104Ala missense_variant 0.6
rpoA 3878199 c.309T>C synonymous_variant 0.6
rpoA 3878202 c.306G>C synonymous_variant 0.6
rpoA 3878205 c.303T>C synonymous_variant 0.6
rpoA 3878217 p.Leu97Val missense_variant 0.6
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038791 c.1914G>C synonymous_variant 0.5
clpC1 4038795 p.Ser637Thr missense_variant 0.6
clpC1 4038812 c.1893T>C synonymous_variant 0.6
clpC1 4038815 c.1890G>A synonymous_variant 0.6
clpC1 4038842 c.1863G>C synonymous_variant 0.43
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 0.43
clpC1 4038860 c.1845G>C synonymous_variant 0.62
clpC1 4038878 c.1827A>G synonymous_variant 0.56
clpC1 4038884 c.1821C>T synonymous_variant 0.56
clpC1 4038890 c.1815G>A synonymous_variant 0.56
clpC1 4038896 c.1809C>A synonymous_variant 0.5
clpC1 4038905 c.1800A>G synonymous_variant 0.5
clpC1 4038911 c.1794G>T synonymous_variant 0.44
clpC1 4038914 c.1791G>C synonymous_variant 0.44
clpC1 4038917 c.1788C>T synonymous_variant 0.5
clpC1 4038923 c.1782A>G synonymous_variant 0.58
clpC1 4038926 c.1779G>C synonymous_variant 0.62
clpC1 4038932 c.1773G>T synonymous_variant 0.62
clpC1 4038941 c.1764G>C synonymous_variant 0.69
clpC1 4038953 c.1752A>G synonymous_variant 0.64
clpC1 4038956 c.1749T>C synonymous_variant 0.6
clpC1 4038965 c.1740T>C synonymous_variant 0.6
clpC1 4038971 c.1734T>C synonymous_variant 0.6
clpC1 4038974 c.1731T>G synonymous_variant 0.6
clpC1 4038977 c.1728G>T synonymous_variant 0.6
clpC1 4038997 c.1708T>C synonymous_variant 0.62
clpC1 4039007 c.1698G>C synonymous_variant 0.58
clpC1 4039012 p.Ala565Ser missense_variant 0.55
clpC1 4039016 p.Ser563Ala missense_variant 0.55
clpC1 4039019 c.1686G>C synonymous_variant 0.55
clpC1 4039022 c.1683A>G synonymous_variant 0.55
clpC1 4039025 c.1680C>G synonymous_variant 0.55
clpC1 4039070 c.1635G>C synonymous_variant 0.5
clpC1 4039073 c.1632C>T synonymous_variant 0.5
clpC1 4039082 c.1623C>T synonymous_variant 0.4
clpC1 4039085 c.1620A>G synonymous_variant 0.33
clpC1 4039517 c.1188C>G synonymous_variant 0.6
clpC1 4039522 c.1183C>T synonymous_variant 0.6
clpC1 4039526 c.1179G>C synonymous_variant 0.6
clpC1 4039553 c.1152C>G synonymous_variant 0.8
clpC1 4039559 c.1146C>G synonymous_variant 0.8
clpC1 4039562 c.1143C>A synonymous_variant 0.8
clpC1 4039568 p.Met379Leu missense_variant 0.67
clpC1 4039571 c.1134G>T synonymous_variant 0.67
clpC1 4039574 p.Ala377Gly missense_variant 0.67
clpC1 4039577 c.1128T>C synonymous_variant 0.67
clpC1 4039580 c.1125C>G synonymous_variant 0.67
clpC1 4039586 c.1119G>C synonymous_variant 0.8
clpC1 4039589 c.1116G>C synonymous_variant 0.67
clpC1 4039592 c.1113G>T synonymous_variant 0.8
clpC1 4039601 c.1104G>T synonymous_variant 0.83
clpC1 4039610 c.1095G>C synonymous_variant 0.86
clpC1 4039616 c.1089G>T synonymous_variant 0.86
clpC1 4039619 c.1086G>T synonymous_variant 0.86
clpC1 4039622 c.1083C>T synonymous_variant 0.75
clpC1 4039649 c.1056G>C synonymous_variant 0.89
clpC1 4039652 c.1053G>C synonymous_variant 0.89
clpC1 4039661 c.1044T>C synonymous_variant 0.91
clpC1 4039670 c.1035G>T synonymous_variant 0.88
clpC1 4039673 c.1032G>C synonymous_variant 0.88
clpC1 4039682 c.1023C>T synonymous_variant 0.75
clpC1 4039685 c.1020C>T synonymous_variant 0.75
clpC1 4039691 c.1014G>C synonymous_variant 0.75
clpC1 4039694 c.1011G>C synonymous_variant 0.75
clpC1 4039697 c.1008C>T synonymous_variant 0.75
clpC1 4039700 c.1005C>T synonymous_variant 0.75
clpC1 4039724 c.981A>G synonymous_variant 0.86
clpC1 4039742 c.963C>T synonymous_variant 0.86
clpC1 4039748 c.957G>C synonymous_variant 0.8
clpC1 4039751 c.954A>G synonymous_variant 0.8
clpC1 4039757 c.948A>G synonymous_variant 0.8
clpC1 4039769 c.936C>T synonymous_variant 0.8
clpC1 4039775 c.930G>C synonymous_variant 0.75
clpC1 4039778 c.927A>G synonymous_variant 0.75
clpC1 4039781 c.924G>C synonymous_variant 0.8
clpC1 4039787 c.918G>C synonymous_variant 0.8
clpC1 4039793 c.912C>G synonymous_variant 0.67
clpC1 4039802 c.903G>T synonymous_variant 0.67
clpC1 4039814 c.891C>G synonymous_variant 0.6
clpC1 4039817 c.888A>C synonymous_variant 0.6
clpC1 4039820 c.885T>G synonymous_variant 0.6
clpC1 4039826 c.879C>G synonymous_variant 0.5
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.43
clpC1 4039850 c.855T>C synonymous_variant 0.57
clpC1 4039865 c.840T>C synonymous_variant 0.57
clpC1 4039889 c.816G>T synonymous_variant 0.5
clpC1 4039898 c.807C>G synonymous_variant 0.6
clpC1 4039904 c.801A>G synonymous_variant 0.6
clpC1 4039907 c.798G>A synonymous_variant 0.6
clpC1 4039925 c.780C>T synonymous_variant 0.43
clpC1 4039931 c.774T>C synonymous_variant 0.43
clpC1 4039934 c.771G>C synonymous_variant 0.33
clpC1 4039940 c.765G>C synonymous_variant 0.33
clpC1 4040426 c.279T>C synonymous_variant 0.25
clpC1 4040431 c.274T>C synonymous_variant 0.25
clpC1 4040432 c.273C>T synonymous_variant 0.25
clpC1 4040447 c.258G>A synonymous_variant 0.33
clpC1 4040450 c.255A>G synonymous_variant 0.33
clpC1 4040459 c.246C>G synonymous_variant 0.4
clpC1 4040462 c.243C>A synonymous_variant 0.4
clpC1 4040465 c.240T>C synonymous_variant 0.4
clpC1 4040468 c.237G>C synonymous_variant 0.4
clpC1 4040471 c.234T>C synonymous_variant 0.4
clpC1 4040477 c.228G>T synonymous_variant 0.4
clpC1 4040480 c.225T>C synonymous_variant 0.5
clpC1 4040486 c.219G>T synonymous_variant 0.5
clpC1 4040522 c.183T>C synonymous_variant 0.5
clpC1 4040528 c.177G>C synonymous_variant 0.43
clpC1 4040531 c.174T>A synonymous_variant 0.38
clpC1 4040534 c.171A>G synonymous_variant 0.33
clpC1 4040537 c.168G>C synonymous_variant 0.33
clpC1 4040540 c.165G>C synonymous_variant 0.33
clpC1 4040546 c.159G>T synonymous_variant 0.33
clpC1 4040560 c.145C>T synonymous_variant 0.33
clpC1 4040561 c.144A>G synonymous_variant 0.33
clpC1 4040570 c.135C>A synonymous_variant 0.29
clpC1 4040573 c.132T>C synonymous_variant 0.29
clpC1 4040576 c.129C>T synonymous_variant 0.29
clpC1 4040582 c.123G>C synonymous_variant 0.25
clpC1 4040585 c.120A>G synonymous_variant 0.25
clpC1 4040588 c.117T>C synonymous_variant 0.25
clpC1 4040591 c.114C>T synonymous_variant 0.25
clpC1 4040594 c.111G>C synonymous_variant 0.25
clpC1 4040600 c.103_105delTTAinsCTC synonymous_variant 0.25
clpC1 4040606 c.99T>C synonymous_variant 0.25
clpC1 4040615 c.90C>G synonymous_variant 0.22
embC 4240671 p.Thr270Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0