EBG00000313325 - n.577T>C
Drug resistance types
89 Sensitive
32 RR-TB
32 HR-TB
40 MDR-TB
18 Pre-XDR-TB
1 XDR-TB
125 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 5 |
| lineage4.9 | 146 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.2.2 | 4 |
| lineage4.6.1.1 | 1 |
| lineage4.3.3 | 5 |
| lineage4.3;lineage4.9 | 1 |
| lineage2.2.1 | 36 |
| lineage2;lineage4.9 | 1 |
| lineage4.1.1.3 | 5 |
| lineage4.3.4.2 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage1.1.2 | 2 |
| lineage4.6.1.2 | 8 |
| lineage3.1.2.1 | 3 |
| lineage4.2.2.2 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage3 | 9 |
| lineage4.1.1.1 | 3 |
| lineage4.1.2 | 2 |
| lineage4.8.1 | 4 |
| lineage4.8 | 18 |
| lineage3;lineage4 | 2 |
| lineage4 | 3 |
| lineage4.4.1.1 | 4 |
| lineage4.4.2 | 1 |
| lineage4.3.3;lineage4.8 | 2 |
| La1.3 | 4 |
| La1.8.1 | 6 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.3 | 1 |
| lineage2.2.1.1 | 2 |
| 1 | |
| lineage4.3.4.1 | 3 |
| lineage4.4.1.1.1 | 4 |
| lineage4.2.1 | 4 |
| lineage5.1.1 | 2 |
| lineage6.1.2 | 1 |
| lineage4.5 | 2 |
| La2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.3.2.1 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.2.2 | 1 |
| lineage4.9.1 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.6.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.7 | 3 |
| lineage6.1.3 | 2 |
| lineage4.6.5 | 2 |
| lineage4.9;lineage7 | 2 |
| lineage4.4 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 337 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR5818414 | Other | lineage4.9 | None | SAMN02381005 | Sensitive | lineage4.6.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR18913750 | Other | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR036194 | Other | lineage4.6.1.2 | None | SRR5341429 | HR-TB | lineage3.1.2.1 | None | DRR184982 | Other | lineage2.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR2513259 | Other | lineage3 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR473279 | Other | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR1184021 | Sensitive | lineage4.9 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR5818445 | Other | lineage4.9 | None | SRR5818436 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR5818410 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR3675582 | Other | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR5818421 | Sensitive | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR323037 | Other | lineage4.9 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR036215 | Other | lineage4.8 | None | ERR4769552 | Sensitive | La1.3 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR3468488 | Other | La1.8.1 | None | ERR560440 | Sensitive | La1.2.BCG;lineage4.9 | None | ERR867566 | Other | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR5818452 | Other | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR5818469 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR036225 | Other | lineage4.3.4.2.1 | None | SRR1049623 | MDR-TB | lineage4.4.1.1 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR10796599 | Other | lineage4.8 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR6855695 | Sensitive | lineage4.8 | None | SRR5818411 | RR-TB | lineage4.9 | None | ERR10796591 | Other | lineage4.9 | None | SRR5818423 | RR-TB | lineage4.9 | None | SRR5818453 | Sensitive | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4796577 | HR-TB | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR5818395 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR7444074 | Sensitive | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR387051 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR1173719 | Other | lineage4.9 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR13180204 | Other | lineage3 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR867575 | Other | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR176741 | Other | lineage4.9 | None | SRR5818435 | Sensitive | lineage4.9 | None | ERR867569 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR751338 | Other | lineage5.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR5818386 | Other | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR5818458 | Other | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR5818426 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR5818413 | Sensitive | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR867572 | Other | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR037234 | Sensitive | lineage4.9 | None | SRR5818437 | RR-TB | lineage4.9 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR8073606 | Other | La1.8.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR5818427 | HR-TB | lineage4.9 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR1180399 | Sensitive | lineage4.9 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR736850 | Sensitive | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | ERR867571 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | ERR867573 | Other | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR2027250 | Other | lineage3.1.2 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR1140766 | Sensitive | lineage1.1.2 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1175474 | Other | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR867544 | Other | lineage4.9 | None | SRR26159065 | Other | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1791940 | Other | La1.8.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR6045832 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283046 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675552 | Other | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR7236374 | Other | La1.8.1 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818456 | Other | lineage4.9 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5818385 | Other | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR867574 | Other | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR1063855 | Other | lineage4.9 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR1180446 | Other | lineage4.9 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818409 | Other | lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | SRR1173185 | Other | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR6359070 | Sensitive | lineage4.9 | None | SAMN02381009 | MDR-TB | lineage4.4.1.1 | None | ERR10796635 | Other | lineage4.8 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR21713567 | Sensitive | lineage4.5 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818396 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1180250 | Other | lineage4.9 | None | SRR6152979 | Other | lineage4.7 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None |
|---|
