TB-Profiler result

Run: SRR3675552
Summary

Run ID: SRR3675552

Sample name:

Date: 04-04-2023 05:33:19

Number of reads: 27565

Percentage reads mapped: 1.49

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 1.0 rifampicin
rpoB 761140 p.His445Arg missense_variant 1.0 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.69 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761051 c.1245G>C synonymous_variant 1.0
rpoB 761054 c.1248G>C synonymous_variant 1.0
rpoB 761057 c.1251G>C synonymous_variant 1.0
rpoB 761060 c.1254C>G synonymous_variant 1.0
rpoB 761084 c.1278C>A synonymous_variant 1.0
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 1.0
rpoB 761096 c.1290G>C synonymous_variant 1.0
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761126 c.1320G>C synonymous_variant 0.67
rpoB 761132 c.1326G>C synonymous_variant 1.0
rpoB 761133 c.1327T>C synonymous_variant 1.0
rpoB 761150 c.1344A>C synonymous_variant 1.0
rpoB 761159 c.1353G>C synonymous_variant 1.0
rpoB 761165 c.1359G>C synonymous_variant 1.0
rpoB 761180 c.1374A>G synonymous_variant 1.0
rpoB 761974 p.His723Leu missense_variant 1.0
rpoB 761990 c.2184G>C synonymous_variant 1.0
rpoB 761997 p.Leu731Val missense_variant 1.0
rpoB 762003 p.Asn733Gln missense_variant 1.0
rpoB 762009 p.Leu735Val missense_variant 1.0
rpoB 762016 p.Glu737Ala missense_variant 1.0
rpoB 762024 p.Val740Met missense_variant 1.0
rpoB 762053 c.2247T>C synonymous_variant 1.0
rpoB 762057 p.Ile751Val missense_variant 1.0
rpoB 762062 c.2256T>C synonymous_variant 1.0
rpoB 762065 c.2259T>C synonymous_variant 1.0
rpoB 762086 c.2280G>C synonymous_variant 0.67
rpoC 762827 c.-543G>C upstream_gene_variant 1.0
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 1.0
rpoC 762839 c.-531G>A upstream_gene_variant 0.4
rpoB 762855 p.Val1017Ile missense_variant 1.0
rpoB 762858 p.Thr1018Ser missense_variant 1.0
rpoC 762863 c.-507T>G upstream_gene_variant 1.0
rpoB 762871 p.Met1022Thr missense_variant 1.0
rpoB 762878 p.Ile1024Met missense_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762887 c.-483G>C upstream_gene_variant 1.0
rpoC 762899 c.-471G>C upstream_gene_variant 1.0
rpoC 762926 c.-444C>G upstream_gene_variant 1.0
rpoC 762929 c.-441G>C upstream_gene_variant 0.8
rpoC 762947 c.-423C>G upstream_gene_variant 1.0
rpoC 762971 c.-399G>C upstream_gene_variant 1.0
rpoC 762980 c.-390T>C upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>C upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoB 763014 p.Met1070Leu missense_variant 1.0
rpoB 763017 p.Gln1071Glu missense_variant 1.0
rpoC 763022 c.-348C>T upstream_gene_variant 0.5
rpoC 763028 c.-342T>C upstream_gene_variant 0.57
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 1.0
rpoC 763043 c.-327G>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763067 c.-303C>G upstream_gene_variant 0.5
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoB 763077 p.Val1091Thr missense_variant 1.0
rpoC 763103 c.-267G>C upstream_gene_variant 1.0
rpoC 763109 c.-261C>T upstream_gene_variant 0.6
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoB 763119 p.Asn1105Asp missense_variant 1.0
rpoC 763127 c.-243G>C upstream_gene_variant 1.0
rpoC 763133 c.-237G>C upstream_gene_variant 1.0
rpoC 763480 c.111C>T synonymous_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 763496 p.Lys43Arg missense_variant 1.0
rpoC 763511 p.Cys48Gly missense_variant 1.0
rpoC 763517 p.Lys50Gln missense_variant 1.0
rpoC 763528 c.159G>C synonymous_variant 1.0
rpoC 763531 c.162G>C synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763550 p.Tyr61Ala missense_variant 1.0
rpoC 763555 c.186C>T synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763578 p.Phe70Tyr missense_variant 1.0
rpoC 763598 p.Arg77Lys missense_variant 1.0
rpoC 763606 c.237C>A synonymous_variant 1.0
rpoC 763615 c.246G>C synonymous_variant 1.0
rpoC 763618 c.249C>T synonymous_variant 1.0
rpoC 763623 c.255_258delCAAG frameshift_variant 1.0
rpoC 763630 c.261G>C synonymous_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 0.67
rpoC 763642 c.273G>C synonymous_variant 1.0
rpoC 763648 c.279C>T synonymous_variant 1.0
rpoC 763657 p.Glu96Asp missense_variant 1.0
rpoC 763660 c.291T>G synonymous_variant 1.0
rpoC 763663 c.294C>T synonymous_variant 0.67
rpoC 763666 c.297G>C synonymous_variant 1.0
rpoC 763675 c.306C>G synonymous_variant 1.0
rpoC 763699 c.330G>T synonymous_variant 1.0
rpoC 763708 c.339G>C synonymous_variant 1.0
rpoC 763714 c.345G>C synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763718 p.Leu117Val missense_variant 1.0
rpoC 763723 c.354G>C synonymous_variant 1.0
rpoC 763724 p.Asp119Asn missense_variant 1.0
rpoC 763729 c.360G>C synonymous_variant 1.0
rpoC 763732 c.363C>G synonymous_variant 1.0
rpoC 763735 c.366G>C synonymous_variant 1.0
rpoC 763744 c.375G>C synonymous_variant 1.0
rpoC 763751 p.Ile128Val missense_variant 1.0
rpoC 763762 c.393C>T synonymous_variant 1.0
rpoC 764441 p.Ile358Leu missense_variant 1.0
rpoC 764446 p.Asp359Glu missense_variant 1.0
rpoC 764455 c.1086G>C synonymous_variant 1.0
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764485 c.1116G>C synonymous_variant 1.0
rpoC 764491 c.1122G>T synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764503 c.1134G>T synonymous_variant 1.0
rpoC 764509 c.1140G>C synonymous_variant 0.5
rpoC 764512 c.1143G>C synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764530 c.1161C>T synonymous_variant 1.0
rpoC 764536 c.1167G>C synonymous_variant 1.0
rpoC 764543 p.Thr392Ala missense_variant 1.0
rpoC 764548 c.1179G>C synonymous_variant 1.0
rpoC 764573 p.Leu402Ile missense_variant 1.0
rpoC 764578 c.1209C>G synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764582 p.Leu405Met missense_variant 1.0
rpoC 764593 c.1224C>T synonymous_variant 0.75
rpoC 764602 c.1233C>T synonymous_variant 1.0
rpoC 764605 c.1236G>T synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764626 c.1257C>T synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764647 c.1278C>T synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764653 c.1284G>C synonymous_variant 1.0
rpoC 764656 c.1287C>T synonymous_variant 1.0
rpoC 764662 c.1293G>C synonymous_variant 1.0
rpoC 764677 c.1308C>G synonymous_variant 1.0
rpoC 764678 p.Lys437Gln missense_variant 1.0
rpoC 764692 c.1323C>T synonymous_variant 0.6
rpoC 764701 c.1332C>G synonymous_variant 0.3
rpoC 764706 p.Leu446Gln missense_variant 1.0
rpoC 764713 c.1344G>C synonymous_variant 1.0
rpoC 764731 c.1362G>C synonymous_variant 1.0
rpoC 764737 c.1368G>C synonymous_variant 1.0
rpoC 764746 c.1377G>C synonymous_variant 1.0
rpoC 764752 c.1383G>C synonymous_variant 1.0
rpoC 764755 p.Asp462Glu missense_variant 1.0
rpoC 764756 p.Leu463Lys missense_variant 1.0
rpoC 764762 p.His465Tyr missense_variant 1.0
rpoC 764774 p.Ile469Val missense_variant 1.0
rpoC 764780 p.Ser471Ala missense_variant 1.0
rpoC 764793 p.Met475Lys missense_variant 1.0
rpoC 764812 c.1443C>A synonymous_variant 1.0
rpoC 764813 p.Gln482Glu missense_variant 1.0
rpoC 764824 c.1455T>C synonymous_variant 1.0
rpoC 764827 c.1458G>C synonymous_variant 1.0
rpoC 764833 p.Glu488Asp missense_variant 1.0
rpoC 764836 p.Glu489Asp missense_variant 1.0
rpoC 764839 c.1470C>T synonymous_variant 1.0
rpoC 764843 p.Ala492Arg missense_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.86
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.55
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.55
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.55
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.29
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.65
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.72
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.37
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.74
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.88
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.88
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.75
rrs 1472286 n.441_442insT non_coding_transcript_exon_variant 1.0
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 1.0
rrs 1472292 n.447A>T non_coding_transcript_exon_variant 0.75
rrs 1472293 n.449delG non_coding_transcript_exon_variant 1.0
rrs 1472307 n.462C>G non_coding_transcript_exon_variant 1.0
rrs 1472308 n.464_466delCTC non_coding_transcript_exon_variant 1.0
rrs 1472313 n.469_470delAT non_coding_transcript_exon_variant 0.75
rrs 1472319 n.474C>G non_coding_transcript_exon_variant 0.75
rrs 1472325 n.480G>T non_coding_transcript_exon_variant 1.0
rrs 1472326 n.481T>G non_coding_transcript_exon_variant 0.75
rrs 1472329 n.484A>T non_coding_transcript_exon_variant 0.75
rrs 1472330 n.485G>A non_coding_transcript_exon_variant 0.75
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.91
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.97
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.97
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.97
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.97
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 1.0
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.97
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.8
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 1.0
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 1.0
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.97
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.97
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.42
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.54
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.4
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.41
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.56
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.61
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.6
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.54
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.34
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.39
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.65
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.44
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.99
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.72
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.66
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.72
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.99
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.75
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.69
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.86
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.95
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.45
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.67
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.31
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.73
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.68
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.68
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.64
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.37
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.61
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.58
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.62
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>C non_coding_transcript_exon_variant 0.33
rrs 1472846 n.1002delG non_coding_transcript_exon_variant 1.0
rrs 1472850 n.1005_1006insGC non_coding_transcript_exon_variant 0.5
rrs 1472868 n.1023T>G non_coding_transcript_exon_variant 1.0
rrs 1472873 n.1028C>A non_coding_transcript_exon_variant 0.35
rrs 1472880 n.1035_1036insA non_coding_transcript_exon_variant 0.35
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.71
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.89
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.92
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.94
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.93
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.71
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.76
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.96
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.85
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.78
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.83
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.88
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.87
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.53
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.41
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.89
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.89
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.88
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.98
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.9
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.88
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.97
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.97
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.8
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.74
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.71
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.98
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.97
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 1.0
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.72
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrl 1473384 n.-274A>G upstream_gene_variant 0.5
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.5
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.75
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.33
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 1.0
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.38
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.67
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.33
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.67
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.58
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.73
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474315 n.658A>G non_coding_transcript_exon_variant 0.36
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.9
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.33
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.9
rrl 1474355 n.698A>T non_coding_transcript_exon_variant 0.33
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.6
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.6
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474363 n.706A>T non_coding_transcript_exon_variant 0.6
rrl 1474365 n.708G>C non_coding_transcript_exon_variant 0.6
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.75
rrl 1474384 n.727C>G non_coding_transcript_exon_variant 0.86
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474406 n.749T>A non_coding_transcript_exon_variant 0.75
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.67
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474483 n.826C>T non_coding_transcript_exon_variant 0.83
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.71
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 0.71
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.29
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 0.71
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 1.0
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.56
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.56
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.56
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.5
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 1.0
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.67
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.56
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 0.92
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.94
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.98
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.91
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.97
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.99
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 1.0
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.99
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.5
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.95
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.98
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.94
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.91
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.94
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.9
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 0.9
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 1.0
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 1.0
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.89
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 1.0
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.93
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.91
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 1.0
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.43
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.96
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.9
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.61
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.31
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.92
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.97
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.93
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.96
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.95
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1475998 n.2341C>G non_coding_transcript_exon_variant 1.0
rrl 1476000 n.2343G>A non_coding_transcript_exon_variant 0.93
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.42
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.75
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.43
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.48
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.54
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.3
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.42
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.33
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.5
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.49
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.84
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.84
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.85
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.62
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.74
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.64
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.63
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.54
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.94
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.53
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.87
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.84
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.85
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.78
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.77
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.83
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.74
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.76
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.82
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.8
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.68
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.9
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.66
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.99
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.47
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.42
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.51
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.54
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.49
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.53
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.97
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 1.0
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.83
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.41
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.59
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.59
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.41
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 1.0
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.86
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.68
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.87
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.86
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.88
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.83
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833732 p.Pro64Leu missense_variant 1.0
rpsA 1833736 c.195C>T synonymous_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833770 p.Asn77Asp missense_variant 1.0
rpsA 1833781 c.240T>C synonymous_variant 1.0
rpsA 1833797 p.Val86Ile missense_variant 1.0
rpsA 1833802 c.261A>G synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834225 c.684C>T synonymous_variant 0.4
rpsA 1834228 c.687C>T synonymous_variant 0.6
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834246 c.705G>T synonymous_variant 0.88
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 1.0
rpsA 1834298 p.Gln253Glu missense_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 0.92
rpsA 1834307 p.Asp256Gln missense_variant 1.0
rpsA 1834312 c.771G>A synonymous_variant 1.0
rpsA 1834327 c.786G>T synonymous_variant 1.0
rpsA 1834345 c.804C>T synonymous_variant 1.0
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834354 c.813G>C synonymous_variant 1.0
rpsA 1834357 c.816T>C synonymous_variant 0.86
rpsA 1834360 c.819G>C synonymous_variant 0.86
rpsA 1834361 c.820T>C synonymous_variant 1.0
rpsA 1834366 c.825A>C synonymous_variant 1.0
rpsA 1834375 c.834G>C synonymous_variant 1.0
rpsA 1834378 c.837T>C synonymous_variant 1.0
rpsA 1834387 c.846C>T synonymous_variant 1.0
rpsA 1834395 p.Arg285Gln missense_variant 0.92
rpsA 1834397 p.His286Ala missense_variant 0.91
rpsA 1834411 c.870T>C synonymous_variant 1.0
rpsA 1834417 c.876G>C synonymous_variant 1.0
rpsA 1834423 c.882G>C synonymous_variant 1.0
rpsA 1834427 p.Ile296Val missense_variant 1.0
rpsA 1834435 c.894G>C synonymous_variant 1.0
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834456 c.915T>C synonymous_variant 0.8
rpsA 1834459 c.918G>C synonymous_variant 1.0
rpsA 1834465 c.924T>C synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834474 c.933C>G synonymous_variant 0.86
rpsA 1834486 p.Glu315Asp missense_variant 1.0
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834501 c.960G>C synonymous_variant 1.0
rpsA 1834504 c.963G>C synonymous_variant 1.0