EBG00000313339 - n.2957A>T
Drug resistance types
81 Sensitive
40 RR-TB
36 HR-TB
43 MDR-TB
22 Pre-XDR-TB
0 XDR-TB
114 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 113 |
| lineage2.2.1 | 39 |
| lineage4.1.2 | 2 |
| lineage4.8.1 | 4 |
| lineage6.3.1 | 2 |
| lineage4.3.4.2.1 | 10 |
| lineage4.4.1.1 | 7 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage3 | 17 |
| lineage4.8 | 17 |
| lineage4.3.3 | 11 |
| lineage4.1.1.3 | 7 |
| lineage3.1.2.1 | 3 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.4.1 | 3 |
| La2 | 1 |
| lineage4.3.2.1 | 3 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 2 |
| lineage1.2.1.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.1.1.3.1 | 1 |
| La1.8.1 | 4 |
| lineage4.4.1.2 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage5.1.1 | 1 |
| lineage4.1 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| La1.3 | 5 |
| lineage2.2.2 | 4 |
| La1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 4 |
| lineage3.1.1 | 2 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4 | 3 |
| lineage4.1.2.1 | 6 |
| La1.6 | 1 |
| lineage6.1.3 | 1 |
| lineage4.4.2 | 3 |
| lineage4.6.5 | 1 |
| lineage4.1.1.1 | 5 |
| lineage1.2.2 | 2 |
| lineage3;lineage4 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.6.1.2 | 4 |
| 2 | |
| lineage3.1.3 | 1 |
| lineage4.5 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.2.1 | 3 |
| lineage2;lineage4.9 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2 | 1 |
| lineage1.1.3.1 | 1 |
| La1.4 | 1 |
| La1.2 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 336 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR1180345 | Other | lineage4.9 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR4819017 | Other | lineage3 | None | ERR2515230 | Sensitive | lineage4.8 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR2513259 | Other | lineage3 | None | ERR867575 | Other | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR502523 | Other | lineage6.3.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR867572 | Other | lineage4.9 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4816417 | Other | lineage4.9 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | ERR867566 | Other | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | SRR7236330 | Other | La1.8.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4769516 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502517 | Other | lineage5.1.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | ERR4821054 | Sensitive | lineage3 | None | SRR1792011 | Other | La1.8.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | ERR4769514 | Other | La1.3 | None | ERR736831 | Other | lineage4.9 | None | ERR4816464 | Other | lineage3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR4769555 | Sensitive | La1.3 | None | SRR1181368 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1175474 | Other | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR10796591 | Other | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR4815225 | Other | lineage1.2.2.2 | None | ERR4814745 | Other | lineage4.6.5 | None | SRR6046117 | Other | lineage4.9 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4769506 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR4821796 | Other | lineage4.1.1.1 | None | ERR4819876 | Other | lineage4.3.4.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4820829 | Other | lineage4.8 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769552 | Sensitive | La1.3 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4769493 | Other | lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR1023509 | Other | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR4033549 | Other | lineage2.2.2 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4817060 | Other | None | SRR9971046 | MDR-TB | lineage4.8 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR1181256 | Other | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR21713567 | Sensitive | lineage4.5 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4821263 | Other | lineage4.1.3 | gb | ERR4796577 | HR-TB | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR4820151 | Other | lineage4.8 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR4769439 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4816549 | Other | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR4816610 | Other | lineage4.3.3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675552 | Other | lineage4.9 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR4769408 | Other | La1.3 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR867574 | Other | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR4816852 | Other | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR4818988 | Other | lineage1.2.2 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR4821679 | Other | lineage4.3.3 | None | SRR1184329 | Other | lineage4.9 | None | ERR4814709 | Other | lineage4.1.1.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR16278274 | Other | La1.4 | None | ERR4816510 | Other | lineage4.1.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR2100532 | Sensitive | lineage3 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR4769418 | Other | La1.2 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR228175 | Sensitive | lineage3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR4821286 | Other | lineage4.8 | None | SRR6045832 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None |
|---|
