TB-Profiler result

Run: SRR5007193
Summary

Run ID: SRR5007193

Sample name:

Date: 04-04-2023 07:52:39

Number of reads: 1308023

Percentage reads mapped: 42.0

Strain: lineage4.1.1.3.1

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.1 Euro-American (X-type) X1;X2;X3 None 1.0
lineage4.1.1.3 Euro-American (X-type) X1;X3 RD193 1.0
lineage4.1.1.3.1 Euro-American (X-type) X1;X3 RD193 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.33 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.16 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.17 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
ccsA 620748 c.858T>G synonymous_variant 0.39
rpoB 761027 c.1221A>G synonymous_variant 0.14
rpoB 761037 c.1231T>C synonymous_variant 0.17
rpoB 761054 c.1248G>C synonymous_variant 0.2
rpoB 761058 p.Val418Thr missense_variant 0.12
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.28
rpoB 761096 c.1290G>C synonymous_variant 0.33
rpoB 761102 c.1296A>G synonymous_variant 0.35
rpoB 761132 c.1326G>C synonymous_variant 0.31
rpoB 761133 c.1327T>C synonymous_variant 0.33
rpoB 761150 c.1344A>C synonymous_variant 0.24
rpoB 761154 c.1348_1350delTCGinsAGC synonymous_variant 0.14
rpoB 761159 c.1353G>C synonymous_variant 0.26
rpoB 761165 c.1359G>C synonymous_variant 0.24
rpoB 761180 c.1374A>C synonymous_variant 0.18
rpoB 761189 c.1383T>C synonymous_variant 0.15
rpoB 761195 c.1389G>C synonymous_variant 0.16
rpoB 761213 c.1407G>C synonymous_variant 0.15
rpoB 762053 c.2247T>C synonymous_variant 0.18
rpoB 762057 p.Ile751Val missense_variant 0.17
rpoB 762062 c.2256T>C synonymous_variant 0.18
rpoB 762065 c.2259T>C synonymous_variant 0.19
rpoB 762083 c.2277T>C synonymous_variant 0.13
rpoB 762086 c.2280G>C synonymous_variant 0.13
rpoB 762110 c.2304G>C synonymous_variant 0.21
rpoB 762114 p.Ile770Val missense_variant 0.18
rpoB 762125 c.2319G>A synonymous_variant 0.12
rpoB 762127 p.Val774Ala missense_variant 0.12
rpoB 762149 c.2343G>C synonymous_variant 0.21
rpoB 762156 p.Val784Ile missense_variant 0.14
rpoB 762167 c.2361T>C synonymous_variant 0.1
rpoB 762180 p.Asp792Ser missense_variant 0.12
rpoB 762194 c.2388G>C synonymous_variant 0.18
rpoB 762197 c.2391C>G synonymous_variant 0.14
rpoB 762206 c.2400C>G synonymous_variant 0.16
rpoB 762212 c.2406G>C synonymous_variant 0.22
rpoB 762218 c.2412T>G synonymous_variant 0.14
rpoB 762245 c.2439G>C synonymous_variant 0.11
rpoB 762254 c.2448T>C synonymous_variant 0.11
rpoC 762926 c.-444C>G upstream_gene_variant 0.2
rpoC 762929 c.-441G>C upstream_gene_variant 0.21
rpoC 762947 c.-423C>G upstream_gene_variant 0.29
rpoC 762962 c.-408C>T upstream_gene_variant 0.12
rpoC 762971 c.-399G>C upstream_gene_variant 0.36
rpoC 762980 c.-390T>C upstream_gene_variant 0.29
rpoC 762989 c.-381G>C upstream_gene_variant 0.35
rpoC 762995 c.-375G>C upstream_gene_variant 0.25
rpoB 763005 p.Cys1067Gly missense_variant 0.26
rpoB 763014 p.Met1070Leu missense_variant 0.19
rpoB 763017 p.Gln1071Glu missense_variant 0.31
rpoC 763028 c.-342T>C upstream_gene_variant 0.3
rpoC 763031 c.-339T>C upstream_gene_variant 0.28
rpoB 763038 p.Thr1078Ala missense_variant 0.37
rpoC 763043 c.-327G>C upstream_gene_variant 0.3
rpoC 763053 c.-317T>C upstream_gene_variant 0.33
rpoC 763070 c.-300T>C upstream_gene_variant 0.24
rpoB 763077 p.Val1091Thr missense_variant 0.21
rpoC 763103 c.-267G>C upstream_gene_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.13
rpoC 763528 c.159G>C synonymous_variant 0.14
rpoC 763531 c.162G>C synonymous_variant 0.16
rpoC 763534 c.165T>C synonymous_variant 0.16
rpoC 763537 c.168C>G synonymous_variant 0.13
rpoC 763546 c.177A>G synonymous_variant 0.16
rpoC 763550 p.Tyr61Ala missense_variant 0.16
rpoC 763570 c.201G>C synonymous_variant 0.2
rpoC 763578 p.Phe70Tyr missense_variant 0.21
rpoC 763589 p.Ile74Val missense_variant 0.12
rpoC 763606 c.237C>A synonymous_variant 0.12
rpoC 763609 c.240C>G synonymous_variant 0.12
rpoC 763615 c.246G>C synonymous_variant 0.23
rpoC 763622 p.Ala85Ser missense_variant 0.29
rpoC 763636 c.267T>C synonymous_variant 0.12
rpoC 763642 c.273G>C synonymous_variant 0.21
rpoC 763647 p.Gly93Ala missense_variant 0.17
rpoC 763655 p.Glu96Asn missense_variant 0.17
rpoC 763660 c.291T>C synonymous_variant 0.16
rpoC 763666 c.297G>C synonymous_variant 0.17
rpoC 763669 c.300C>G synonymous_variant 0.14
rpoC 763696 c.327T>C synonymous_variant 0.2
rpoC 763699 c.330G>T synonymous_variant 0.17
rpoC 763708 c.339G>C synonymous_variant 0.27
rpoC 763714 c.345G>C synonymous_variant 0.21
rpoC 763717 c.348T>C synonymous_variant 0.25
rpoC 763718 p.Leu117Val missense_variant 0.11
rpoC 763723 c.354G>C synonymous_variant 0.14
rpoC 763724 p.Asp119Asn missense_variant 0.14
rpoC 763732 c.363C>G synonymous_variant 0.17
rpoC 763735 c.366G>C synonymous_variant 0.15
rpoC 763751 p.Ile128Val missense_variant 0.19
rpoC 764377 c.1008C>G synonymous_variant 0.16
rpoC 764387 c.1018T>C synonymous_variant 0.16
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.19
rpoC 764410 c.1041G>C synonymous_variant 0.16
rpoC 764424 p.Asn352Thr missense_variant 0.16
rpoC 764431 c.1062G>C synonymous_variant 0.15
rpoC 764434 c.1065A>G synonymous_variant 0.19
rpoC 764435 c.1066A>C synonymous_variant 0.16
rpoC 764441 p.Ile358Leu missense_variant 0.16
rpoC 764446 p.Asp359Glu missense_variant 0.15
rpoC 764455 c.1086G>C synonymous_variant 0.15
rpoC 764485 c.1116G>C synonymous_variant 0.18
rpoC 764491 c.1122G>T synonymous_variant 0.14
rpoC 764497 c.1128A>G synonymous_variant 0.14
rpoC 764503 c.1134G>T synonymous_variant 0.15
rpoC 764509 c.1140G>C synonymous_variant 0.15
rpoC 764512 c.1143G>C synonymous_variant 0.13
rpoC 764521 c.1152T>C synonymous_variant 0.17
rpoC 764536 c.1167G>C synonymous_variant 0.15
rpoC 764543 p.Thr392Ala missense_variant 0.15
rpoC 764548 c.1179G>C synonymous_variant 0.16
rpoC 764549 p.Pro394Ala missense_variant 0.11
rpoC 764560 c.1191T>C synonymous_variant 0.15
rpoC 764566 c.1197C>G synonymous_variant 0.18
rpoC 764572 c.1203G>C synonymous_variant 0.16
rpoC 764573 p.Leu402Met missense_variant 0.16
rpoC 764578 c.1209C>G synonymous_variant 0.17
rpoC 764581 c.1212T>C synonymous_variant 0.33
rpoC 764582 p.Leu405Met missense_variant 0.35
rpoC 764602 c.1233C>T synonymous_variant 0.21
rpoC 764605 c.1236G>C synonymous_variant 0.25
rpoC 764611 c.1242G>C synonymous_variant 0.3
rpoC 764623 c.1254C>G synonymous_variant 0.2
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764635 c.1266C>G synonymous_variant 0.19
rpoC 764653 c.1284G>C synonymous_variant 0.25
rpoC 764662 c.1293G>C synonymous_variant 0.13
rpoC 764665 c.1296C>G synonymous_variant 0.14
rpoC 764671 c.1302G>C synonymous_variant 0.14
rpoC 764678 p.Lys437Gln missense_variant 0.11
rpoC 764713 c.1344G>C synonymous_variant 0.11
rpoC 764731 c.1362G>C synonymous_variant 0.12
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1303016 p.Val29Gly missense_variant 0.38
fbiC 1303601 p.Glu224Gly missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.12
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.12
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.38
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.27
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.33
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.45
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.46
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.19
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.41
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.27
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.33
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.19
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.43
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.11
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.15
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.17
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.2
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.16
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.16
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.13
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.12
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.12
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.13
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.13
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.13
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.14
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.14
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.12
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.14
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.14
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.16
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.16
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.19
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.33
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.23
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.35
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.37
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.55
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.21
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.21
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.57
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.42
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.2
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.2
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.34
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.67
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.65
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.25
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.55
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.24
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.54
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.25
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.12
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.12
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.26
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.12
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.16
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.12
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.52
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.27
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.25
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.52
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.3
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.12
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.3
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.12
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.62
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.2
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.25
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.75
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.7
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.8
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.81
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.16
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.29
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.72
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.46
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.61
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.12
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.25
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.66
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.72
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.72
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.12
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.71
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.59
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.21
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.38
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.34
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.31
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.37
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.23
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.48
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.51
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.41
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.41
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.22
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.53
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.28
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.24
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.47
rrs 1473314 n.1469A>G non_coding_transcript_exon_variant 0.2
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.2
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.52
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.18
rrl 1473384 n.-274A>G upstream_gene_variant 0.12
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.15
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.14
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.14
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.15
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.38
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.24
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.12
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.12
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.31
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.27
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.11
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.12
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.17
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.36
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.26
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.15
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.22
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.4
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.24
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.17
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.18
rrl 1474412 n.756_776delACCCACACGCGCATACGCGCG non_coding_transcript_exon_variant 0.15
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.17
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.15
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.42
rrl 1474483 n.826C>T non_coding_transcript_exon_variant 0.17
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.57
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.47
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.23
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 0.22
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.25
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.25
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 0.25
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.15
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.46
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.57
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.43
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.21
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.31
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.16
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.59
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.16
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.31
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.21
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.44
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.22
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.12
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.24
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.26
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 0.21
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.12
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.22
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.12
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.59
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.16
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.32
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.13
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.51
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.47
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.53
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.72
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.12
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.51
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.4
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.5
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.75
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.4
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.48
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.26
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.13
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.7
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.61
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.44
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.48
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.13
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.24
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.17
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.4
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.45
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.25
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.23
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.23
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.24
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.4
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.56
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.45
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.3
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.19
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.51
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.17
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.19
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.39
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.19
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.17
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.55
rrl 1475783 n.2126T>C non_coding_transcript_exon_variant 0.12
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.22
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.67
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.54
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.2
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.4
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.26
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.74
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.72
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.34
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.72
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.62
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.7
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.55
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.7
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.12
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.6
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.55
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.54
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.52
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.13
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 0.23
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.37
rrl 1475998 n.2341C>G non_coding_transcript_exon_variant 0.28
rrl 1476000 n.2343G>A non_coding_transcript_exon_variant 0.12
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.43
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.15
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.1
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.24
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.12
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.2
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.25
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.3
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.16
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.13
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.13
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.33
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.34
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.47
rrl 1476235 n.2578A>G non_coding_transcript_exon_variant 0.12
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.4
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.48
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.33
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.47
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.52
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.13
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.13
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.12
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.42
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.48
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.4
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.48
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.35
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.33
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.33
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.47
rrl 1476306 n.2649A>G non_coding_transcript_exon_variant 0.13
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.13
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.34
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.41
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.5
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.23
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.3
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.75
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.79
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.46
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.36
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.81
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.42
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.73
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.54
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.61
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.19
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.47
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.57
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.62
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.29
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.15
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.39
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.54
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.54
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.33
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.27
rrl 1476548 n.2891T>C non_coding_transcript_exon_variant 0.12
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.23
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.32
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.42
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.15
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.21
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.21
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.21
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.18
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.15
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.12
rpsA 1833661 c.120A>G synonymous_variant 0.11
rpsA 1833667 c.126C>T synonymous_variant 0.15
rpsA 1833668 p.Ile43Val missense_variant 0.17
rpsA 1833676 c.135A>G synonymous_variant 0.16
rpsA 1833679 c.138G>C synonymous_variant 0.16
rpsA 1833685 c.144G>T synonymous_variant 0.17
rpsA 1833688 c.147C>T synonymous_variant 0.17
rpsA 1833694 c.153G>C synonymous_variant 0.17
rpsA 1833727 c.186G>C synonymous_variant 0.17
rpsA 1833732 p.Pro64Leu missense_variant 0.18
rpsA 1833736 c.195C>T synonymous_variant 0.2
rpsA 1833742 c.201A>G synonymous_variant 0.2
rpsA 1833770 p.Asn77Asp missense_variant 0.2
rpsA 1833776 p.Val79Ile missense_variant 0.2
rpsA 1833781 c.240T>C synonymous_variant 0.2
rpsA 1833790 c.249T>C synonymous_variant 0.19
rpsA 1833797 p.Val86Ile missense_variant 0.12
rpsA 1833874 c.333T>C synonymous_variant 0.11
rpsA 1833912 p.Glu124Gly missense_variant 0.1
rpsA 1833928 c.387G>C synonymous_variant 0.11
rpsA 1833949 c.408T>C synonymous_variant 0.16
rpsA 1833955 c.414G>C synonymous_variant 0.15
rpsA 1833970 c.429G>C synonymous_variant 0.2
rpsA 1833979 c.438T>C synonymous_variant 0.25
rpsA 1833994 c.453G>C synonymous_variant 0.25
rpsA 1834000 c.459G>C synonymous_variant 0.21
rpsA 1834009 c.468C>T synonymous_variant 0.13
rpsA 1834012 c.471G>C synonymous_variant 0.23
rpsA 1834021 c.480C>T synonymous_variant 0.11
rpsA 1834034 p.Ile165Val missense_variant 0.12
rpsA 1834040 p.Lys167Arg missense_variant 0.18
rpsA 1834046 p.Ile169Leu missense_variant 0.12
rpsA 1834069 c.528G>C synonymous_variant 0.13
rpsA 1834234 c.693G>C synonymous_variant 0.13
rpsA 1834246 c.705G>T synonymous_variant 0.12
rpsA 1834249 c.708T>C synonymous_variant 0.23
rpsA 1834261 c.720A>G synonymous_variant 0.21
rpsA 1834264 c.723G>C synonymous_variant 0.21
rpsA 1834285 c.744G>C synonymous_variant 0.17
rpsA 1834294 c.753G>C synonymous_variant 0.25
rpsA 1834298 p.Gln253Glu missense_variant 0.27
rpsA 1834303 c.762T>C synonymous_variant 0.15
rpsA 1834306 c.765T>C synonymous_variant 0.29
rpsA 1834307 p.Asp256Gln missense_variant 0.23
rpsA 1834312 c.771G>A synonymous_variant 0.13
rpsA 1834327 c.786G>C synonymous_variant 0.13
rpsA 1834330 c.789C>G synonymous_variant 0.18
rpsA 1834348 c.807T>C synonymous_variant 0.22
rpsA 1834354 c.813G>C synonymous_variant 0.22
rpsA 1834357 c.816T>G synonymous_variant 0.12
rpsA 1834360 c.819G>C synonymous_variant 0.15
rpsA 1834361 c.820T>C synonymous_variant 0.2
rpsA 1834366 c.825A>G synonymous_variant 0.17
rpsA 1834378 c.837T>C synonymous_variant 0.15
rpsA 1834486 p.Glu315Asp missense_variant 0.14
rpsA 1834489 c.948T>C synonymous_variant 0.12
rpsA 1834523 p.Glu328Gln missense_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4040021 c.684A>C synonymous_variant 0.11
clpC1 4040024 c.681A>G synonymous_variant 0.12
clpC1 4040033 c.672G>C synonymous_variant 0.13
clpC1 4040045 c.660C>G synonymous_variant 0.11
clpC1 4040069 c.636G>C synonymous_variant 0.15
clpC1 4040090 c.615T>C synonymous_variant 0.15
clpC1 4040096 c.609G>C synonymous_variant 0.15
clpC1 4040114 p.Ile197Met missense_variant 0.15
clpC1 4040117 c.588A>G synonymous_variant 0.14
clpC1 4040125 p.Glu194Lys missense_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embB 4249408 c.2895G>A synonymous_variant 1.0
aftB 4269540 c.-704C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0