EBG00000313339 - n.1006C>T
Drug resistance types
24 Sensitive
45 RR-TB
15 HR-TB
45 MDR-TB
20 Pre-XDR-TB
1 XDR-TB
155 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.1.1 | 3 |
| lineage4.8.1 | 5 |
| lineage4.3.3 | 18 |
| lineage3 | 18 |
| lineage2.2.1 | 50 |
| lineage1.2.2.2 | 2 |
| lineage4.9 | 36 |
| lineage4.7 | 4 |
| lineage4.1.2.1 | 19 |
| lineage4.5 | 3 |
| lineage4.8 | 31 |
| lineage4.4.1.1.1 | 4 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2.1 | 8 |
| lineage4.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.1.2.1;lineage4.9 | 2 |
| lineage1.1.3.1 | 4 |
| lineage2;lineage4 | 1 |
| lineage2.2.2 | 6 |
| lineage4.2.1 | 5 |
| lineage4.4.1.1 | 3 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage1.2.2.1 | 1 |
| 3 | |
| lineage4 | 2 |
| lineage4.1.3 | 3 |
| La1.6 | 1 |
| lineage4.1.2 | 2 |
| lineage4.6.2.2 | 4 |
| lineage4.6.5 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 5 |
| lineage1.2.2 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3.1.1 | 4 |
| lineage3;lineage4.9 | 2 |
| lineage5.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.6.1.1 | 3 |
| lineage4.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1.1 | 2 |
| La1.8.1 | 5 |
| lineage3.1.2.1 | 3 |
| lineage4.3.2 | 1 |
| lineage4.2.2.2 | 1 |
| La1.3 | 1 |
| lineage4.8.2 | 1 |
| lineage3;lineage4 | 2 |
| lineage5 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.3 | 3 |
| lineage4.4.1.2 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage6.1.2 | 1 |
| lineage4.4 | 1 |
| La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 305 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7069193 | Other | lineage4.3.1.1 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2515077 | Sensitive | lineage3 | gb | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | SRR7069319 | Other | lineage4.5 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046064 | Other | lineage3 | gb | ERR4829337 | Sensitive | lineage4.8 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR11465627 | Sensitive | lineage4.3.4.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819324 | Other | lineage4.8 | gb | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1238558 | Other | lineage4.9 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR4820891 | Sensitive | lineage4.9 | gb | ERR4830892 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR4821761 | Other | lineage3 | gb | SRR18003023 | Other | lineage2.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | ERR4815452 | Other | lineage4.3.3 | None | SRR1181256 | Other | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | SRR12882248 | Sensitive | lineage1.2.2.1 | None | SRR7645928 | Other | lineage4.7 | None | ERR4816690 | Other | None | ERR4820324 | Other | lineage4 | None | ERR4820151 | Other | lineage4.8 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR2514173 | Other | lineage4.5 | gb | ERR4815780 | MDR-TB | lineage4.1.3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1181403 | Other | lineage4.9 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR10796565 | Other | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR4814362 | Other | lineage4.8 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR4817874 | Other | lineage3 | None | ERR11049173 | Sensitive | lineage4.1.2.1 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR4814745 | Other | lineage4.6.5 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR10796633 | Other | lineage4.3.4.2 | None | ERR4815923 | Sensitive | lineage4.8 | None | ERR867575 | Other | lineage4.9 | None | SRR6045267 | RR-TB | lineage4.8 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303796 | Other | lineage4.3.3 | None | ERR10796623 | Other | lineage4.1.1.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR4818126 | Other | lineage1.2.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | ERR11464997 | HR-TB | lineage1.2.2.2 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR11342689 | Other | lineage4.1.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002945 | Other | lineage2.2.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR10796617 | Other | lineage4.3.4.1 | None | ERR10796596 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR4819641 | Other | lineage4.6.2.2 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR1023509 | Other | lineage4.9 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR4818691 | Other | lineage4.8 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | ERR502517 | Other | lineage5.1.1 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR1173182 | Other | lineage4.6.1.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR4815502 | Other | lineage4.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR4816464 | Other | lineage3 | None | ERR10796576 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR4817069 | RR-TB | None | SRR1173770 | Other | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR10796635 | Other | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR4821325 | Other | lineage3 | None | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4818904 | Other | lineage4.8 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140716 | Other | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4819007 | Other | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR7755657 | Other | lineage4.8 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR14296220 | Other | La1.8.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR1180440 | Other | lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | SRR6046815 | Other | lineage3 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6046852 | MDR-TB | lineage3 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR11049213 | Sensitive | lineage4.1.2.1 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR6045957 | Other | lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7070320 | Other | lineage4.8 | None | ERR10796634 | Other | lineage4.7 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR4769423 | Other | La1.3 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR5908124 | Other | lineage4.8 | None | ERR4819002 | HR-TB | lineage4.8 | None | SRR1049672 | Other | lineage3 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR867574 | Other | lineage4.9 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR2513298 | Sensitive | lineage4.8 | gb | DRR184932 | Other | lineage2.2.1 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4816967 | Other | lineage5 | None | ERR3468613 | Other | La1.8.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18002985 | HR-TB | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR4820030 | Other | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | SRR7070087 | Other | lineage4.8.1 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | SRR7070419 | Other | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR10796580 | Other | lineage4 | None | ERR10796593 | Other | lineage4.3 | None | ERR4817189 | Other | lineage4.7 | None | ERR5311077 | Other | La1.8.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3468488 | Other | La1.8.1 | None | ERR9119120 | Other | lineage4.8 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | SRR7236330 | Other | La1.8.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1180446 | Other | lineage4.9 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR4814623 | Sensitive | lineage4.8 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR18002961 | Other | lineage2.2.1 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR9117760 | HR-TB | lineage4.3 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR4819166 | Other | lineage3 | gb | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817060 | Other | None | SRR11342671 | RR-TB | lineage4.1.3 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | SRR18002956 | Other | lineage2.2.1 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR7069839 | Other | lineage4.8 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR9786613 | Sensitive | lineage4.1.2.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4821286 | Other | lineage4.8 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR7069347 | Other | lineage4.1.2.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR4819772 | Other | lineage1.1.3.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | ERR10762318 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR502474 | RR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046208 | Other | lineage4.8 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SRR6046117 | Other | lineage4.9 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | ERR9787033 | Sensitive | lineage6.1.2 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None |
|---|
