TB-Profiler result

Run: SRR5007169
Summary

Run ID: SRR5007169

Sample name:

Date: 04-04-2023 07:51:25

Number of reads: 216366

Percentage reads mapped: 5.7

Strain: lineage4.8.2

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8.2 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.8 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.5 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.8 streptomycin
rrl 1476471 n.2814G>T non_coding_transcript_exon_variant 0.76 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 8135 c.834C>T synonymous_variant 1.0
fgd1 490751 c.-32T>G upstream_gene_variant 0.4
rpoB 761039 p.Leu411Phe missense_variant 0.4
rpoB 761054 c.1248G>C synonymous_variant 0.67
rpoB 761058 p.Val418Thr missense_variant 0.8
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.9
rpoB 761096 c.1290G>C synonymous_variant 0.9
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761132 c.1326G>C synonymous_variant 0.8
rpoB 761133 c.1327T>C synonymous_variant 0.8
rpoB 761150 c.1344A>C synonymous_variant 0.73
rpoB 761154 p.Ser450Asn missense_variant 0.7
rpoB 761159 c.1353G>C synonymous_variant 0.7
rpoB 761165 c.1359G>C synonymous_variant 0.7
rpoB 761180 c.1374A>C synonymous_variant 0.7
rpoB 761189 c.1383T>C synonymous_variant 0.62
rpoB 761193 p.Gly463Ser missense_variant 0.5
rpoB 761534 c.1728G>C synonymous_variant 0.17
rpoB 761537 c.1731C>G synonymous_variant 0.17
rpoB 761557 p.Ala584Gly missense_variant 0.25
rpoB 761562 p.Ala586Ser missense_variant 0.25
rpoB 761565 p.Met587Leu missense_variant 0.25
rpoB 761570 c.1764T>C synonymous_variant 0.31
rpoB 761579 c.1773G>C synonymous_variant 0.31
rpoB 761600 c.1794T>C synonymous_variant 0.33
rpoB 761612 c.1806G>C synonymous_variant 0.33
rpoB 761615 c.1809A>C synonymous_variant 0.33
rpoB 761633 c.1827G>C synonymous_variant 0.4
rpoB 761642 c.1836G>C synonymous_variant 0.4
rpoB 761643 p.Val613Ile missense_variant 0.4
rpoB 761648 c.1842T>C synonymous_variant 0.44
rpoB 761649 p.Ser615Pro missense_variant 0.44
rpoB 761654 p.Glu616Asp missense_variant 0.44
rpoB 761672 c.1866C>G synonymous_variant 0.43
rpoB 761675 c.1869G>C synonymous_variant 0.43
rpoB 761683 p.Leu626Arg missense_variant 0.33
rpoB 761688 p.Ala628Thr missense_variant 0.33
rpoB 761930 c.2124G>C synonymous_variant 0.25
rpoB 761937 p.Lys711Gln missense_variant 0.25
rpoB 761945 c.2139G>C synonymous_variant 0.25
rpoB 761951 c.2145G>C synonymous_variant 0.3
rpoB 761955 p.Ile717Phe missense_variant 0.3
rpoB 761961 p.Pro719Thr missense_variant 0.3
rpoB 761974 p.His723Leu missense_variant 0.4
rpoB 761981 c.2175C>T synonymous_variant 0.3
rpoB 761990 c.2184G>C synonymous_variant 0.33
rpoB 761997 p.Leu731Ile missense_variant 0.33
rpoB 762003 p.Asn733Gln missense_variant 0.33
rpoB 762009 p.Leu735Val missense_variant 0.36
rpoB 762016 p.Glu737Ala missense_variant 0.33
rpoB 762024 p.Val740Met missense_variant 0.33
rpoB 762053 c.2247T>C synonymous_variant 0.42
rpoB 762057 p.Ile751Val missense_variant 0.38
rpoB 762062 c.2256T>C synonymous_variant 0.38
rpoB 762065 c.2259T>C synonymous_variant 0.38
rpoB 762083 c.2277T>C synonymous_variant 0.3
rpoB 762086 c.2280G>C synonymous_variant 0.2
rpoB 762110 c.2304G>C synonymous_variant 0.25
rpoB 762140 c.2334G>C synonymous_variant 0.33
rpoB 762143 c.2337T>C synonymous_variant 0.62
rpoB 762149 c.2343G>C synonymous_variant 0.56
rpoB 762156 p.Val784Ile missense_variant 0.56
rpoB 762167 c.2361T>C synonymous_variant 0.44
rpoB 762176 c.2370T>C synonymous_variant 0.57
rpoB 762180 p.Asp792Ser missense_variant 0.57
rpoB 762185 c.2379G>C synonymous_variant 0.57
rpoB 762194 c.2388G>C synonymous_variant 0.67
rpoB 762197 c.2391C>G synonymous_variant 0.67
rpoB 762206 c.2400C>G synonymous_variant 0.67
rpoB 762212 c.2406G>C synonymous_variant 0.67
rpoB 762228 c.2422C>T synonymous_variant 0.5
rpoB 762245 c.2439G>C synonymous_variant 0.67
rpoB 762248 c.2442G>C synonymous_variant 0.67
rpoB 762254 c.2448T>C synonymous_variant 0.5
rpoB 762287 c.2481C>T synonymous_variant 0.33
rpoC 762842 c.-528G>C upstream_gene_variant 0.33
rpoC 762854 c.-516G>C upstream_gene_variant 0.38
rpoB 762855 p.Val1017Ile missense_variant 0.5
rpoB 762858 p.Thr1018Ser missense_variant 0.62
rpoC 762863 c.-507T>G upstream_gene_variant 0.56
rpoB 762879 p.Met1025Leu missense_variant 0.55
rpoC 762887 c.-483G>C upstream_gene_variant 0.58
rpoC 762896 c.-474G>C upstream_gene_variant 0.5
rpoC 762926 c.-444C>G upstream_gene_variant 0.47
rpoC 762929 c.-441G>T upstream_gene_variant 0.47
rpoC 762938 c.-432G>C upstream_gene_variant 0.4
rpoC 762944 c.-426C>T upstream_gene_variant 0.25
rpoC 762962 c.-408C>T upstream_gene_variant 0.35
rpoC 762965 c.-405T>C upstream_gene_variant 0.12
rpoC 762971 c.-399G>C upstream_gene_variant 0.47
rpoC 762980 c.-390T>C upstream_gene_variant 0.13
rpoC 762983 c.-387C>T upstream_gene_variant 0.33
rpoC 762989 c.-381G>C upstream_gene_variant 0.4
rpoC 762995 c.-375G>T upstream_gene_variant 0.25
rpoB 763005 p.Cys1067Val missense_variant 0.18
rpoB 763017 p.Gln1071Glu missense_variant 0.15
rpoC 763483 c.114G>C synonymous_variant 0.22
rpoC 763486 c.117T>C synonymous_variant 0.22
rpoC 763507 c.138G>C synonymous_variant 0.38
rpoC 763528 c.159G>C synonymous_variant 0.33
rpoC 763531 c.162G>C synonymous_variant 0.56
rpoC 763534 c.165T>C synonymous_variant 0.5
rpoC 763537 c.168C>G synonymous_variant 0.38
rpoC 763546 c.177A>G synonymous_variant 0.5
rpoC 763550 p.Tyr61Ala missense_variant 0.5
rpoC 763570 c.201G>C synonymous_variant 0.82
rpoC 763578 p.Phe70Tyr missense_variant 0.75
rpoC 763585 c.216C>G synonymous_variant 0.54
rpoC 763589 p.Ile74Val missense_variant 0.38
rpoC 763598 p.Arg77Ser missense_variant 0.14
rpoC 763606 c.237C>A synonymous_variant 0.38
rpoC 763609 c.240C>G synonymous_variant 0.21
rpoC 763615 c.246G>C synonymous_variant 0.67
rpoC 763618 c.249C>T synonymous_variant 0.5
rpoC 763622 p.Ala85Ser missense_variant 0.65
rpoC 763633 c.264T>C synonymous_variant 0.18
rpoC 763636 c.267T>C synonymous_variant 0.65
rpoC 763642 c.273G>C synonymous_variant 0.52
rpoC 763647 p.Gly93Ala missense_variant 0.55
rpoC 763655 p.Glu96Asn missense_variant 0.5
rpoC 763660 c.291T>C synonymous_variant 0.53
rpoC 763663 c.294C>G synonymous_variant 0.14
rpoC 763666 c.297G>C synonymous_variant 0.14
rpoC 763669 c.300C>G synonymous_variant 0.41
rpoC 763696 c.327T>A synonymous_variant 0.53
rpoC 763699 c.330G>C synonymous_variant 0.29
rpoC 763708 c.339G>C synonymous_variant 0.53
rpoC 763714 c.345G>C synonymous_variant 0.47
rpoC 763717 c.348T>C synonymous_variant 0.47
rpoC 763723 c.354G>C synonymous_variant 0.47
rpoC 763724 p.Asp119Asn missense_variant 0.47
rpoC 763729 c.360G>C synonymous_variant 0.44
rpoC 763732 c.363C>G synonymous_variant 0.5
rpoC 763735 c.366G>C synonymous_variant 0.41
rpoC 763751 p.Ile128Val missense_variant 0.47
rpoC 763765 c.396T>G synonymous_variant 0.29
rpoC 763772 p.Val135Met missense_variant 0.15
rpoC 764485 c.1116G>C synonymous_variant 0.25
rpoC 764491 c.1122G>T synonymous_variant 0.29
rpoC 764497 p.Glu376Asp missense_variant 0.35
rpoC 764498 p.Ser377Ala missense_variant 0.35
rpoC 764503 c.1134G>C synonymous_variant 0.38
rpoC 764509 c.1140G>C synonymous_variant 0.4
rpoC 764521 c.1152T>C synonymous_variant 0.4
rpoC 764536 c.1167G>T synonymous_variant 0.33
rpoC 764539 c.1170C>G synonymous_variant 0.38
rpoC 764548 c.1179G>C synonymous_variant 0.4
rpoC 764549 p.Pro394Val missense_variant 0.4
rpoC 764566 c.1197C>G synonymous_variant 0.5
rpoC 764572 c.1203G>C synonymous_variant 0.5
rpoC 764575 c.1206T>G synonymous_variant 0.5
rpoC 764581 c.1212T>C synonymous_variant 0.47
rpoC 764582 p.Leu405Met missense_variant 0.47
rpoC 764605 c.1236G>C synonymous_variant 0.5
rpoC 764611 c.1242G>C synonymous_variant 0.5
rpoC 764620 c.1251G>C synonymous_variant 0.5
rpoC 764623 c.1254C>G synonymous_variant 0.46
rpoC 764632 c.1263T>C synonymous_variant 0.42
rpoC 764635 c.1266C>G synonymous_variant 0.42
rpoC 764644 c.1275G>C synonymous_variant 0.27
rpoC 764650 c.1281G>T synonymous_variant 0.27
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.27
rpoC 764662 c.1293G>C synonymous_variant 0.27
rpoC 764671 c.1302G>C synonymous_variant 0.25
rpoC 764683 c.1314G>C synonymous_variant 0.23
rpoC 765627 p.Ala753Val missense_variant 0.4
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776891 p.Gln530His missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1304318 p.Arg463Leu missense_variant 0.29
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.25
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.42
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.46
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.59
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.5
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.53
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 0.58
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.48
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.57
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.52
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.56
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.47
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.47
rrs 1472274 n.429A>G non_coding_transcript_exon_variant 0.17
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.5
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.38
rrs 1472290 n.445C>T non_coding_transcript_exon_variant 0.44
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.33
rrs 1472295 n.450A>C non_coding_transcript_exon_variant 0.33
rrs 1472298 n.453_454insCCTGC non_coding_transcript_exon_variant 0.43
rrs 1472314 n.469A>G non_coding_transcript_exon_variant 0.38
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.43
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 0.38
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.4
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.36
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.84
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.79
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.76
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.8
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.8
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.81
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.81
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.82
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.83
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.82
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.8
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.91
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.8
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.79
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.83
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.92
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.74
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.18
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.73
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.77
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.17
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.77
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.77
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.17
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.77
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.8
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.81
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.45
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.45
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.5
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.44
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.38
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.38
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.72
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.88
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.82
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.91
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.91
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.87
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.92
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.95
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.84
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.95
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.9
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.9
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.8
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.9
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.9
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.9
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.9
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.9
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.14
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.71
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.7
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.15
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.85
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.79
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.21
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.23
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.53
rrs 1473266 n.1421A>G non_coding_transcript_exon_variant 0.19
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.64
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.21
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.62
rrs 1473284 n.1439A>T non_coding_transcript_exon_variant 0.42
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.62
rrs 1473314 n.1469A>G non_coding_transcript_exon_variant 0.5
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.5
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.5
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.5
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.3
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 0.28
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.26
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.26
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.3
rrl 1474292 n.635T>G non_coding_transcript_exon_variant 0.26
rrl 1474293 n.637_647delCCTCTCCGGAG non_coding_transcript_exon_variant 0.28
rrl 1474306 n.649A>T non_coding_transcript_exon_variant 0.28
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.54
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.54
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.56
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.57
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.54
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.57
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.54
rrl 1474437 n.781_782delAA non_coding_transcript_exon_variant 0.65
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.67
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.74
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.76
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.8
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.14
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.68
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.68
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.78
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.79
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.81
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.15
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.82
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.15
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.15
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.82
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.17
rrl 1474615 n.958A>G non_coding_transcript_exon_variant 0.17
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.86
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.82
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.72
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.84
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.84
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.15
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.7
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.7
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.79
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.64
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.8
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.62
rrl 1474734 n.1077G>C non_coding_transcript_exon_variant 0.72
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.77
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.79
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.14
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.15
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.62
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.78
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.74
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.74
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.13
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.67
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.27
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.69
rrl 1474920 n.1263G>C non_coding_transcript_exon_variant 0.14
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.22
rrl 1475026 n.1369G>C non_coding_transcript_exon_variant 0.29
rrl 1475031 n.1374G>C non_coding_transcript_exon_variant 0.5
rrl 1475059 n.1403_1404insTA non_coding_transcript_exon_variant 0.6
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.6
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 0.6
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 0.55
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.5
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.46
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.46
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.46
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.4
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 0.4
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.15
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.43
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.33
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.43
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.67
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.67
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.71
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.19
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.18
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.68
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.65
rrl 1475783 n.2126T>C non_coding_transcript_exon_variant 0.14
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.61
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.82
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.82
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.21
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.79
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.76
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.59
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.21
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.75
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.77
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.78
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.78
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.78
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.73
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.14
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.56
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.33
rrl 1475992 n.2335T>C non_coding_transcript_exon_variant 0.33
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 0.33
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.33
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 0.25
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.33
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.22
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.4
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.68
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.77
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.77
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.84
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.62
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.62
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.84
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.58
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.58
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.26
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.58
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.58
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.58
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.78
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.78
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.62
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.83
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.82
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.82
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.91
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.98
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.91
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.98
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.92
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.9
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.99
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.98
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.99
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.9
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.99
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.9
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.98
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.98
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.89
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.88
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.89
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.9
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.9
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.86
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.86
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.84
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.84
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.83
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.86
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.86
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.19
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.8
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.97
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.43
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.43
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.44
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.41
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.55
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.88
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.88
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.5
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.31
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.82
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.67
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.67
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.45
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.18
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.55
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.44
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.44
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.22
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.29
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.38
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.25
rpsA 1833628 c.87G>C synonymous_variant 0.22
rpsA 1833641 p.Asn34Asp missense_variant 0.3
rpsA 1833646 c.105T>C synonymous_variant 0.3
rpsA 1833652 c.111C>T synonymous_variant 0.3
rpsA 1833661 c.120A>G synonymous_variant 0.42
rpsA 1833667 c.126C>T synonymous_variant 0.42
rpsA 1833668 p.Ile43Val missense_variant 0.42
rpsA 1833676 c.135A>G synonymous_variant 0.42
rpsA 1833679 c.138G>C synonymous_variant 0.42
rpsA 1833685 c.144G>T synonymous_variant 0.45
rpsA 1833688 c.147C>T synonymous_variant 0.5
rpsA 1833694 c.153G>C synonymous_variant 0.5
rpsA 1833727 c.186G>C synonymous_variant 0.5
rpsA 1833732 p.Pro64Leu missense_variant 0.56
rpsA 1833736 c.195C>T synonymous_variant 0.56
rpsA 1833742 c.201A>G synonymous_variant 0.62
rpsA 1833770 p.Asn77Asp missense_variant 0.88
rpsA 1833776 p.Val79Ile missense_variant 0.88
rpsA 1833781 c.240T>C synonymous_variant 0.71
rpsA 1833790 c.249T>C synonymous_variant 0.67
rpsA 1833797 p.Val86Ile missense_variant 0.67
rpsA 1833808 c.267G>C synonymous_variant 0.4
rpsA 1833811 c.270G>C synonymous_variant 0.4
rpsA 1833814 c.273C>G synonymous_variant 0.29
rpsA 1833815 p.Thr92Gln missense_variant 0.29
rpsA 1833829 c.288A>G synonymous_variant 0.29
rpsA 1833832 c.291G>A synonymous_variant 0.29
rpsA 1833835 c.294C>G synonymous_variant 0.29
rpsA 1833838 c.297G>T synonymous_variant 0.29
rpsA 1833841 c.300C>G synonymous_variant 0.29
rpsA 1833842 p.Ile101Leu missense_variant 0.29
rpsA 1833847 c.306C>G synonymous_variant 0.29
rpsA 1833848 c.307_308delTCinsAG synonymous_variant 0.29
rpsA 1833856 c.315A>G synonymous_variant 0.38
rpsA 1833874 c.333T>C synonymous_variant 0.54
rpsA 1833905 p.Lys122Glu missense_variant 0.45
rpsA 1833912 p.Glu124Gly missense_variant 0.5
rpsA 1833915 p.Ala125Val missense_variant 0.5
rpsA 1833921 p.Lys127Thr missense_variant 0.5
rpsA 1833926 p.Thr129Ser missense_variant 0.5
rpsA 1833949 c.408T>C synonymous_variant 0.62
rpsA 1833952 c.411C>T synonymous_variant 0.67
rpsA 1833955 c.414G>C synonymous_variant 0.69
rpsA 1833961 c.420C>G synonymous_variant 0.71
rpsA 1833970 c.429G>C synonymous_variant 0.83
rpsA 1833979 c.438T>C synonymous_variant 0.8
rpsA 1833994 c.453G>C synonymous_variant 0.72
rpsA 1834009 c.468C>T synonymous_variant 0.67
rpsA 1834012 c.471G>C synonymous_variant 0.69
rpsA 1834015 c.474G>T synonymous_variant 0.69
rpsA 1834024 c.483G>C synonymous_variant 0.71
rpsA 1834034 p.Ile165Val missense_variant 0.64
rpsA 1834040 p.Lys167Arg missense_variant 0.71
rpsA 1834046 p.Ile169Leu missense_variant 0.71
rpsA 1834054 c.513C>G synonymous_variant 0.71
rpsA 1834063 c.522C>T synonymous_variant 0.64
rpsA 1834093 c.552G>C synonymous_variant 0.64
rpsA 1834096 c.555G>C synonymous_variant 0.5
rpsA 1834114 c.573G>C synonymous_variant 0.38
rpsA 1834195 c.654G>C synonymous_variant 0.56
rpsA 1834210 c.669C>T synonymous_variant 0.56
rpsA 1834213 c.672G>C synonymous_variant 0.56
rpsA 1834219 c.678C>G synonymous_variant 0.56
rpsA 1834222 c.681T>C synonymous_variant 0.56
rpsA 1834225 c.684C>G synonymous_variant 0.56
rpsA 1834228 c.687C>T synonymous_variant 0.56
rpsA 1834231 c.690T>C synonymous_variant 0.56
rpsA 1834234 c.693G>C synonymous_variant 0.5
rpsA 1834246 c.705G>C synonymous_variant 0.5
rpsA 1834249 c.708T>C synonymous_variant 0.5
rpsA 1834261 c.720A>G synonymous_variant 0.45
rpsA 1834264 c.723G>C synonymous_variant 0.45
rpsA 1834285 c.744G>C synonymous_variant 0.62
rpsA 1834294 c.753G>C synonymous_variant 0.62
rpsA 1834298 p.Gln253Glu missense_variant 0.62
rpsA 1834303 c.762T>C synonymous_variant 0.62
rpsA 1834306 c.765T>C synonymous_variant 0.31
rpsA 1834307 p.Asp256Lys missense_variant 0.5
rpsA 1834318 c.777C>G synonymous_variant 0.43
rpsA 1834327 c.786G>C synonymous_variant 0.45
rpsA 1834330 c.789C>G synonymous_variant 0.4
rpsA 1834348 c.807T>C synonymous_variant 0.25
rpsA 1834354 c.813G>C synonymous_variant 0.25
rpsA 1834360 c.819G>C synonymous_variant 0.25
rpsA 1834361 c.820T>C synonymous_variant 0.22
rpsA 1834366 c.825A>G synonymous_variant 0.22
rpsA 1834378 c.837T>C synonymous_variant 0.3
rpsA 1834384 c.843A>G synonymous_variant 0.3
rpsA 1834395 p.Arg285Gln missense_variant 0.3
rpsA 1834397 p.His286Ala missense_variant 0.3
rpsA 1834408 c.867C>G synonymous_variant 0.27
rpsA 1834411 c.870T>C synonymous_variant 0.3
rpsA 1834417 c.876G>C synonymous_variant 0.25
rpsA 1834423 c.882G>C synonymous_variant 0.25
rpsA 1834427 p.Ile296Val missense_variant 0.25
rpsA 1834432 c.891G>T synonymous_variant 0.29
rpsA 1834435 c.894G>C synonymous_variant 0.25
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.22
rpsA 1834459 c.918G>C synonymous_variant 0.22
rpsA 1834465 c.924T>C synonymous_variant 0.22
rpsA 1834468 c.927A>C synonymous_variant 0.33
rpsA 1834474 c.933C>G synonymous_variant 0.33
rpsA 1834477 c.936C>T synonymous_variant 0.3
rpsA 1834486 p.Glu315Asp missense_variant 0.5
rpsA 1834489 c.948T>C synonymous_variant 0.5
rpsA 1834504 c.963G>C synonymous_variant 0.47
rpsA 1834522 c.981C>G synonymous_variant 0.38
rpsA 1834523 p.Glu328Gln missense_variant 0.41
rpsA 1834540 c.999G>T synonymous_variant 0.2
rpsA 1834546 p.Asp335Glu missense_variant 0.38
rpsA 1834552 c.1013_1015delTTG disruptive_inframe_deletion 0.31
rpsA 1834558 c.1017_1018insAAG conservative_inframe_insertion 0.35
rpsA 1834570 p.Asp343Glu missense_variant 0.35
rpsA 1834572 p.Ala344Val missense_variant 0.35
rpsA 1834574 p.Met345Phe missense_variant 0.35
rpsA 1834612 c.1071G>C synonymous_variant 0.38
rpsA 1834618 c.1077G>C synonymous_variant 0.33
rpsA 1834619 c.1078T>C synonymous_variant 0.33
rpsA 1834627 c.1086C>G synonymous_variant 0.23
rpsA 1834633 c.1092A>G synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918242 c.303G>T synonymous_variant 0.33
PPE35 2168149 p.Pro822Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ahpC 2726265 p.Lys25Gln missense_variant 0.27
ald 3087596 c.777A>G synonymous_variant 0.25
clpC1 4039724 c.981A>G synonymous_variant 0.2
clpC1 4039729 p.Asp326Asn missense_variant 0.8
clpC1 4039748 c.957G>C synonymous_variant 0.29
clpC1 4039751 c.954A>G synonymous_variant 0.29
clpC1 4039757 c.948A>G synonymous_variant 0.29
clpC1 4039766 c.939T>C synonymous_variant 0.33
clpC1 4039773 p.Lys311Met missense_variant 0.33
clpC1 4039775 c.930G>C synonymous_variant 0.33
clpC1 4039778 c.927A>G synonymous_variant 0.29
clpC1 4039781 c.924G>C synonymous_variant 0.29
clpC1 4040051 c.654C>G synonymous_variant 0.29
clpC1 4040057 c.648C>G synonymous_variant 0.29
clpC1 4040063 c.642G>C synonymous_variant 0.33
clpC1 4040066 c.639G>C synonymous_variant 0.33
clpC1 4040069 c.636G>C synonymous_variant 0.33
clpC1 4040090 c.615T>C synonymous_variant 0.5
clpC1 4040096 c.609G>C synonymous_variant 0.33
panD 4043909 p.Pro125Ser missense_variant 0.4
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0