Rv0668 - c.1242G>C


Drug resistance types
44 Sensitive 42 RR-TB 54 HR-TB 55 MDR-TB 17 Pre-XDR-TB 3 XDR-TB 95 Other
lineage Counts
lineage Count
lineage4.9 77
lineage2.2 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La1.7;lineage4.9 6
lineage2.2.1 37
lineage3 21
lineage3.1.2.1 2
lineage4.3 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.8.2 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.6.1.1 2
lineage4.1;lineage4.8 2
lineage4.4 1
lineage4.8 15
lineage4 3
lineage4.3.3 7
lineage4.6.2.2 6
lineage1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 1
La3;lineage4.3.4 1
La1.7.1;La1.7.X-unk4 1
lineage4.3.3;lineage4.8 4
lineage4.1.2.1 11
lineage4.6.3;lineage4.9 2
lineage4.3.4.2.1 7
lineage4.8.1 2
La1.3 1
lineage4.1.2.1;lineage4.4.1.1 1
lineage1.2.2.2 1
lineage4.6.1.2 4
La1.2.BCG 1
M.canetti;lineage4.9 1
lineage2.2.1.1 2
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.8.1 3
lineage3.1.3 1
lineage4.1.2 1
lineage2.2.1;lineage4.9 1
La1;lineage4.9 1
lineage4.1.1.3 5
lineage4.3;lineage4.9 1
lineage1.1.3.1 1
lineage5.1.1 1
lineage4.4.1.1.1 2
lineage4.7 1
M.canetti;lineage1 1
lineage4.1.2.1;lineage4.9 1
lineage4.9;lineage6.3 1
lineage2.2.1;lineage4 1
lineage1.2.1.2 2
La1.7.1;lineage4.9 1
lineage4.2.2.1 1
lineage4.1.1.3.1;lineage4.9 1
lineage4.9.1 3
lineage1.1.1 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.4.1.2 2
lineage4.3.2.1 4
La1.7 2
lineage4.1.1.1 2
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.4 1
lineage4.4.1.1 2
5
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.7.X-unk4;lineage4.9 1
La1.7.1 1
lineage4.2.2.2 1
lineage4.4.2 1
lineage4.2.1 2
La1.7;M.canetti;lineage4.9 2
lineage2.2.2 4
lineage4.6.3 1
La3;lineage4.9 2
lineage1.2.2.1;lineage4.4.1.1 1
lineage4.3.3;lineage4.9 1
lineage4.9;lineage9 1
lineage2.1;lineage4.9 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.3.4.1 2
lineage4.1.1.3.1 1
M.canetti;lineage4.9;lineage9 1
lineage3.1 1
lineage4.1.2.1;lineage4.4.1 1
lineage4.3.4 1
spoligotype Counts
spoligotype Count
None 310
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675270 Other lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
SRR6046878 Other lineage4.9 None
ERR4817204 Other lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR3675492 Other La1.7;lineage4.9 None
SRR1047993 HR-TB lineage2.2.1 None
ERR2513229 MDR-TB lineage2.2.1 None
ERR4816466 HR-TB lineage4.9 None
SRR6046141 Other lineage4.9 None
ERR4596902 MDR-TB lineage3 None
ERR4800102 Sensitive lineage3.1.2.1 None
ERR3275941 RR-TB lineage4.3 nl
SRR1735596 RR-TB lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341365 Pre-XDR-TB lineage3 None
ERR3275548 Sensitive lineage3 nl
ERR067712 Sensitive lineage4.9 None
SRR3675312 Sensitive lineage4.9 None
SRR5007169 RR-TB lineage4.8.2 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
ERR4818561 Sensitive lineage4.9 None
ERR4872269 XDR-TB lineage2.2.1 None
ERR9786526 Other lineage4.1;lineage4.8 None
SRR16627752 RR-TB lineage4.4 None
SRR6045347 Other lineage4.9 None
ERR978765 RR-TB lineage4.8 None
ERR4798823 HR-TB lineage4 None
SRR11342636 MDR-TB lineage4.3.3 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR1063849 HR-TB lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SAMN02380982 MDR-TB lineage4.3.4.2.1 None
SRR7645899 Other lineage2.2.1 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR1175474 Other lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
SRR11342693 MDR-TB lineage4.8.1 None
ERR736875 HR-TB lineage4.9 None
ERR4769495 Other La1.3 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
ERR176779 HR-TB lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
ERR212114 Other lineage4.3.4.2.1 None
ERR978767 RR-TB lineage4.8 None
SRR1049726 Other lineage4.1.2.1;lineage4.4.1.1 None
ERR3283042 HR-TB lineage4.9 None
ERR4819546 HR-TB lineage3 None
ERR4816656 Other lineage4.9 None
ERR4821276 Sensitive lineage3 None
ERR4830887 Pre-XDR-TB lineage2.2.1 None
SRR19303779 Sensitive lineage4.8 None
ERR4797201 Other lineage1.2.2.2 None
SRR1180137 RR-TB lineage2.2.1 None
ERR4769452 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR1140712 MDR-TB lineage4.6.1.2 None
ERR502470 RR-TB lineage4.9 None
SRR1140753 RR-TB lineage4.3.4.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR9992879 XDR-TB lineage4.3.3 None
ERR3283018 HR-TB lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR1062918 Other lineage3 None
ERR4820586 Other lineage3 gb
ERR9786444 Sensitive lineage4.8 None
SRR19303773 Other lineage4.6.2.2 None
ERR4798262 HR-TB La1.2.BCG None
SRR3675385 Other La1.7;lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR176651 Other lineage4.9 None
SRR1181403 Other lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
ERR5865379 Pre-XDR-TB lineage2.2.1 None
SRR1180440 Other lineage4.9 None
SRR1181256 Other lineage4.9 None
SRR1049582 MDR-TB lineage4.6.1.2 None
ERR9786076 Other lineage3 None
ERR4818929 HR-TB lineage4.9 None
ERR9786619 Sensitive lineage4.8 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR349296 Sensitive lineage4.9 None
ERR038289 Other lineage4.3.3 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR11462861 Other La1.8.1 None
SRR15508558 Sensitive lineage4.1.2.1 None
ERR5162090 RR-TB lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR4817667 HR-TB lineage4.8 None
SRR18511647 Sensitive lineage2.2.1 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR18913742 Sensitive lineage3.1.3 None
ERR323035 Sensitive lineage4.9 None
ERR990545 RR-TB lineage3 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
SRR11342682 Other lineage4.1.2 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR12708406 HR-TB lineage2.2.1;lineage4.9 None
SRR23961542 Other La1;lineage4.9 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR036207 Other lineage4.3;lineage4.9 None
ERR4819864 RR-TB lineage1.1.3.1 None
ERR349330 Sensitive lineage4.9 None
SRR11342660 MDR-TB lineage2.2.1 None
ERR9029360 MDR-TB lineage2.2.1 None
SRR3675267 Other La1.7;lineage4.9 None
ERR2515352 Sensitive lineage2.2.1 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR751330 MDR-TB lineage5.1.1 None
SRR9971026 Sensitive lineage4.4.1.1.1 None
SRR7645928 Other lineage4.7 None
SRR19303788 Sensitive lineage4.8 None
ERR4816755 Other lineage4.1.1.3 None
SRR15014655 Other M.canetti;lineage1 None
ERR3797043 Sensitive lineage4.9 None
SRR11342653 MDR-TB lineage2.2.1 None
ERR349264 Other lineage4.9 None
SRR1062928 Other lineage4.1.2.1;lineage4.9 None
SRR9971333 MDR-TB lineage4.1.1.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR26399255 Sensitive lineage2.2.1 None
ERR5311077 Other La1.8.1 None
SRR1140716 Other lineage3 None
SRR1049041 HR-TB lineage2.2.1;lineage4 None
ERR4799171 Pre-XDR-TB lineage4.8 None
SRR12006550 Other lineage1.2.1.2 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR16149129 MDR-TB lineage4.2.2.1 None
SRR1172885 HR-TB lineage4.9 None
SRR5007161 RR-TB lineage4.1.1.3.1;lineage4.9 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR4817731 HR-TB lineage4.9 None
ERR2517457 Sensitive lineage3 None
ERR4816478 HR-TB lineage4 None
ERR3801503 Other lineage4.6.2.2 None
SRR1013530 Other lineage4.9.1 None
SRR1181289 RR-TB lineage2.2.1 None
SRR18572454 RR-TB lineage4.9 None
ERR978766 RR-TB lineage4.8 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR867567 RR-TB lineage3 None
SRR1173281 Other lineage3 None
SRR1173170 Other lineage4.9 None
SRR14066533 RR-TB lineage1.1.1 None
ERR363509 Sensitive lineage4.9 None
SRR7236330 Other La1.8.1 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR126597 HR-TB lineage4.4.1.2 None
ERR3797047 MDR-TB lineage4.9 None
SRR6045050 Sensitive lineage4.3.2.1 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
ERR4829238 Sensitive lineage3 None
SRR16156775 Other lineage4.9 None
SRR3675222 Other La1.7 None
SRR10808730 Other lineage4.9 None
ERR9786711 Other lineage4.6.2.2 None
SRR8758877 MDR-TB lineage4.1.1.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR16278274 Other La1.4 None
ERR212125 HR-TB lineage4.9 None
ERR473323 HR-TB lineage4.9 None
SRR17567930 Sensitive lineage4.4.1.1 None
ERR4817915 Other lineage4.9 None
SRR1173770 Other lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR11342655 MDR-TB lineage2.2.1 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
ERR2027233 Sensitive lineage4.1.2.1 None
ERR369159 Other lineage4.9 None
SRR19303774 Sensitive lineage4.1.2.1 None
ERR11252664 Other lineage2.2.1 None
ERR4817069 RR-TB None
ERR4796577 HR-TB None
ERR234659 HR-TB None
ERR11252736 Other lineage4.9 None
SRR7535086 Other None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
ERR5865378 Pre-XDR-TB lineage2.2.1 None
SRR3675441 RR-TB lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR373945 Other lineage4.9 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR2513724 Sensitive lineage4.3.2.1 None
ERR4769493 Other lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR13423649 Other lineage2.2.1 None
ERR4815121 HR-TB lineage4.6.2.2 None
ERR2446544 Sensitive lineage3 nl
SRR21240055 Other lineage4.1.2.1 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR7755655 Other lineage4.1.2.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR6982239 Sensitive lineage4.1.1.3 None
SRR1792478 HR-TB La1.7.1 None
ERR4816717 RR-TB lineage3.1.2.1 None
ERR4815556 RR-TB lineage3 None
SRR6045832 Other lineage4.9 None
SAMEA3501073 RR-TB lineage4.8 None
SRR3675501 Other La1.7;lineage4.9 None
SRR17567887 Sensitive lineage4.4.1.2 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR4769433 RR-TB lineage4.9 None
ERR4819314 HR-TB lineage1.1.1 None
ERR751317 Sensitive lineage4.9 None
SRR1181020 Other lineage2.2.1 None
ERR176741 Other lineage4.9 None
SRR10869071 MDR-TB lineage2.2.1 None
SRR3601585 Pre-XDR-TB lineage2.2.1 None
SRR19303775 Sensitive lineage3 None
ERR4818851 RR-TB lineage4.4.1.1 None
ERR4816762 Sensitive lineage4.9 None
SRR7131160 Sensitive lineage3 None
ERR181887 Other lineage4.9 None
SRR6045002 RR-TB lineage4.9 None
SRR11342651 MDR-TB lineage4.1.1.1 None
SRR1062869 Sensitive lineage4.9.1 None
SRR20969542 Other lineage4.4.2 None
ERR970449 RR-TB lineage4.1.1.3 None
SRR1140736 Other lineage4.1.2.1 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
ERR176778 HR-TB lineage4.9 None
ERR5917985 MDR-TB lineage2.2.1 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
SRR1175052 HR-TB lineage4.9 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7645906 Other lineage2.2.1 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR4812763 Other lineage2.2.1 None
ERR4814639 HR-TB lineage4.9 None
SAMN02360591 Pre-XDR-TB lineage2.2.2 None
ERR1063862 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR20969475 Other lineage1.2.1.2 None
SRR2100067 Other lineage4.3.3 None
ERR2446413 Sensitive lineage4.6.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR11342667 MDR-TB lineage4.3.3 None
ERR176777 Sensitive lineage4.3.4.2.1 mw
ERR4821272 RR-TB lineage4.1.2.1 None
ERR11465714 Other lineage1.2.2.1;lineage4.4.1.1 None
ERR1063858 HR-TB lineage4.9 None
ERR12015084 Other lineage4.8 None
SRR19303931 Other lineage2.2.1 None
ERR4819877 HR-TB lineage4.9 None
ERR978767_ERR978765_ERR978766 RR-TB lineage4.8 None
ERR4830353 HR-TB La1.7 None
SRR7535047 RR-TB lineage4.6.1.1 None
SRR6832644 Other lineage4.3.3;lineage4.9 None
ERR473332 Other lineage4.9 None
SRR19303820 RR-TB lineage4.8 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR11349133 MDR-TB lineage4.3.3 None
SRR12416840 MDR-TB lineage4.9 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR9971122 MDR-TB lineage4.8 None
ERR037504 Other lineage4.9.1 None
ERR4769450 Other lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR1180446 Other lineage4.9 None
SRR1175491 MDR-TB lineage4.3.4.1 None
SRR17658565 Pre-XDR-TB lineage3 None
ERR5987263 MDR-TB lineage2.2.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR9971168 Other lineage4.3.2.1 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR4815815 Sensitive lineage4.9 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR9992784 XDR-TB lineage2.2.2 None
ERR161037 HR-TB lineage4.9 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR181824 MDR-TB lineage4.9 None
SRR6045359 HR-TB lineage4.9 None
ERR363456 Sensitive lineage4.9 None
SAMN02360579 HR-TB lineage2.2.1.1 None
SRR6045053 Other lineage4 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR9786843 Other None
SRR28351442 HR-TB lineage3.1 None
SRR1049725 Other lineage4.1.2.1;lineage4.4.1 None
SRR3675510 Sensitive La3;lineage4.9 None
SRR11342662 MDR-TB lineage4.8.1 None
SRR1140574 MDR-TB lineage4.3.3;lineage4.8 None
ERR4821172 RR-TB lineage4.9 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR1175472 RR-TB lineage4.3.4.1 None
SRR1049673 Pre-XDR-TB lineage3 None
ERR736817 HR-TB lineage4.3.4 None
SAMN02360583 HR-TB lineage2.2.2 None
SRR18002941 RR-TB lineage2.2.1 None
SRR3619764 Pre-XDR-TB lineage2.2.1 None