Run ID: SRR15508558
Sample name:
Date: 03-04-2023 14:13:41
Number of reads: 5332346
Percentage reads mapped: 44.86
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.27 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.1 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.1 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476381 | n.2724G>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246280 | c.-234G>T | upstream_gene_variant | 0.36 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |