EBG00000313339 - n.2679C>G
Drug resistance types
54 Sensitive
7 RR-TB
61 HR-TB
61 MDR-TB
42 Pre-XDR-TB
1 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 26 |
| lineage4.4 | 1 |
| lineage4.6.1;lineage2.2.1.1 | 1 |
| lineage2.2.1 | 52 |
| lineage4.2.2.1 | 1 |
| lineage2.2.2;lineage2.2.1 | 3 |
| lineage2.2.1.1 | 5 |
| lineage4.1.2.1 | 8 |
| lineage4 | 6 |
| lineage4.4.1.2 | 1 |
| lineage4.4.1.1 | 12 |
| lineage4.4.2;lineage4.2.2;lineage2.2.1 | 1 |
| lineage4.5 | 5 |
| lineage4;lineage2.2.1 | 1 |
| lineage2.2.2 | 21 |
| lineage4.6.2.2 | 1 |
| lineage4.8 | 6 |
| lineage3 | 10 |
| lineage4.6.1 | 10 |
| lineage4.6.1.1 | 4 |
| lineage4.3.4.2.1 | 9 |
| 12 | |
| lineage4.6.1.2 | 4 |
| lineage4.3.4.2 | 1 |
| lineage4.4.2 | 5 |
| lineage4.6.5 | 1 |
| La1.8.1 | 8 |
| lineage4.3.3 | 3 |
| lineage5.1.1 | 5 |
| lineage6.2.1 | 1 |
| lineage5.1.2 | 1 |
| lineage2.2 | 23 |
| lineage4.8.1 | 3 |
| lineage4;lineage2.2.2 | 1 |
| lineage4.9;lineage2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 253 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173720 | Other | lineage4.9 | None | SRR1172066 | Sensitive | lineage4.9 | None | SRR1172713 | MDR-TB | lineage4.4 | None | SRR1173416 | Other | lineage4.9 | None | SRR1173245 | MDR-TB | lineage4.6.1;lineage2.2.1.1 | None | SRR12006056 | Sensitive | lineage4.9 | None | SRR12006044 | Other | lineage4.9 | None | SRR12006091 | Sensitive | lineage4.9 | None | SRR12006082 | Sensitive | lineage4.9 | None | SRR12006067 | Sensitive | lineage4.9 | None | SRR12006068 | Sensitive | lineage4.9 | None | SRR12006095 | Sensitive | lineage4.9 | None | SRR15316299 | Sensitive | lineage2.2.1 | None | SRR12006070 | Sensitive | lineage4.9 | None | SRR12080291 | MDR-TB | lineage2.2.1 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR15368707 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR15368751 | Sensitive | lineage2.2.1 | None | SRR15368784 | Sensitive | lineage2.2.1.1 | None | SRR15508558 | Sensitive | lineage4.1.2.1 | None | SRR16100231 | Sensitive | lineage4 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR18002888 | RR-TB | lineage2.2.1 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR18002873 | Pre-XDR-TB | lineage4.4.2;lineage4.2.2;lineage2.2.1 | None | SRR18002877 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002951 | Other | lineage4.5 | None | SRR18002911 | Sensitive | lineage4;lineage2.2.1 | None | SRR18002950 | MDR-TB | lineage2.2.1 | None | SRR18002982 | Sensitive | lineage2.2.1 | None | SRR18002971 | Other | lineage2.2.1 | None | SRR18002986 | MDR-TB | lineage2.2.1 | None | SRR18002991 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002996 | MDR-TB | lineage2.2.2 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18003028 | Sensitive | lineage2.2.1 | None | SRR18003026 | Sensitive | lineage2.2.1 | None | SRR18003041 | HR-TB | lineage2.2.1 | None | SRR18003037 | Sensitive | lineage4.5 | None | SRR18003039 | Sensitive | lineage2.2.1 | None | SRR19303776 | Other | lineage4.1.2.1 | None | SRR18003048 | XDR-TB | lineage2.2.1 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR18511647 | Sensitive | lineage2.2.1 | None | SRR19303788 | Sensitive | lineage4.8 | None | SRR19303775 | Other | lineage3 | None | SRR19303779 | Sensitive | lineage4.8 | None | SAMN02381009 | MDR-TB | lineage4.4.1.1 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | SRR19303792 | Sensitive | lineage4.1.2.1 | None | SRR19303806 | Sensitive | lineage4.1.2.1 | None | SRR19303813 | HR-TB | lineage4.8 | None | SAMN02381037 | MDR-TB | lineage4.6.1 | None | SAMN02381005 | Other | lineage4.6.1.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR1750889 | Other | lineage4.4.1.1 | None | ERR4817292 | Sensitive | lineage4.3.4.2.1 | None | ERR192070 | Other | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR1199076 | Sensitive | lineage4.6.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818009 | Sensitive | lineage2.2.1.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR3275548 | Sensitive | lineage3 | nl | ERR4818444 | Other | lineage4.6.5 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR6280132 | Sensitive | lineage2.2.1 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR2693237 | Other | lineage4.9 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02381010 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02381012 | MDR-TB | lineage4.4.1.1 | None | ERR2517457 | Sensitive | lineage3 | None | ERR2446544 | Sensitive | lineage3 | nl | SAMN02381047 | Sensitive | lineage4.6.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR5382721 | Other | La1.8.1 | None | SRR6046395 | HR-TB | lineage4.9 | None | SRR6046609 | Sensitive | lineage4.9 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046834 | Sensitive | lineage4.9 | None | ERR4831894 | MDR-TB | lineage2.2.1.1 | None | ERR4832043 | MDR-TB | lineage2.2.1 | None | SRR7131160 | Sensitive | lineage3 | None | ERR5087789 | Other | La1.8.1 | None | ERR3468631 | Other | La1.8.1 | None | SRR9971296 | MDR-TB | lineage4.8 | None | ERR3283015 | Sensitive | lineage4.9 | None | ERR067664 | Sensitive | lineage4.3.3 | None | ERR3283049 | Sensitive | lineage4.9 | None | ERR3468578 | Other | La1.8.1 | None | ERR4024770 | Sensitive | lineage4.1.2.1 | None | ERR3468640 | Other | La1.8.1 | None | ERR3797084 | Sensitive | lineage4.9 | None | ERR3468639 | Other | La1.8.1 | None | ERR3468638 | Other | La1.8.1 | None | ERR4187652 | Other | lineage4.9 | None | ERR4627332 | Other | La1.8.1 | None | ERR6865787 | Sensitive | lineage4.1.2.1 | None | ERR473279 | Other | lineage4.9 | None | ERR5865378 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865379 | Pre-XDR-TB | lineage2.2.1 | None | ERR751336 | Sensitive | lineage5.1.1 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR751332 | Sensitive | lineage6.2.1 | None | ERR751328 | Sensitive | lineage5.1.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR751329 | Sensitive | lineage5.1.1 | None | ERR751339 | Sensitive | lineage5.1.2 | None | ERR751338 | Other | lineage5.1.1 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013599 | HR-TB | None | SRR1013598 | HR-TB | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013617 | MDR-TB | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013618 | MDR-TB | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR10315476 | MDR-TB | lineage4.8 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR10315473 | MDR-TB | lineage4.8.1 | None | SRR10315595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048982 | HR-TB | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048885 | MDR-TB | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049041 | MDR-TB | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1049622 | MDR-TB | lineage4.4.1.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049623 | MDR-TB | lineage4.4.1.1 | None | SRR1049625 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049629 | MDR-TB | lineage4.4.1.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1049624 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049723 | MDR-TB | lineage4.6.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049743 | Sensitive | lineage4.6.1 | None | SRR1049744 | Sensitive | lineage4.6.1 | None | SRR1049724 | MDR-TB | lineage4.6.1 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062897 | MDR-TB | lineage4.4.1.1 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1062898 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062927 | MDR-TB | lineage4.6.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062902 | MDR-TB | lineage4.4.1.1 | None | SRR11342635 | MDR-TB | lineage4.8 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR1062941 | MDR-TB | lineage4.6.1.2 | None | SRR1062937 | HR-TB | lineage4.6.1 | None | SRR11349134 | Pre-XDR-TB | lineage4.8.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR11342675 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR11349180 | MDR-TB | lineage2.2.1 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1140677 | MDR-TB | lineage4.6.1 | None | SRR1140729 | MDR-TB | lineage4.4.1.1 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1140750 | MDR-TB | lineage4.3.4.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None |
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