Run ID: ERR3283049
Sample name:
Date: 01-04-2023 01:19:08
Number of reads: 16666
Percentage reads mapped: 0.47
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 760406 | c.600G>C | synonymous_variant | 1.0 |
rpoB | 760424 | c.618C>G | synonymous_variant | 1.0 |
rpoB | 760430 | c.624T>C | synonymous_variant | 1.0 |
rpoB | 760481 | c.675G>C | synonymous_variant | 1.0 |
rpoB | 760484 | c.678A>G | synonymous_variant | 1.0 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 1.0 |
rpoB | 760591 | p.Val262Ala | missense_variant | 1.0 |
rpoB | 760611 | c.805T>C | synonymous_variant | 1.0 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 1.0 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 1.0 |
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 0.67 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.8 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.8 |
rpoB | 762925 | p.Thr1040Ile | missense_variant | 0.8 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.8 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.8 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.8 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 0.8 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 1.0 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 1.0 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 1.0 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 1.0 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 1.0 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 1.0 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 1.0 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 1.0 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 1.0 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 1.0 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 1.0 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 1.0 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 1.0 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 1.0 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 1.0 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 1.0 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 1.0 |
rpoC | 764450 | p.Gly361Arg | missense_variant | 1.0 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 1.0 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 1.0 |
rpoC | 764468 | p.Val367Ile | missense_variant | 1.0 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 1.0 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.75 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.75 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.75 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.75 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.67 |
rpoC | 764575 | c.1206T>C | synonymous_variant | 0.75 |
rpoC | 764576 | p.Ser403Ala | missense_variant | 0.75 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.75 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.75 |
rpoC | 764587 | c.1218C>G | synonymous_variant | 0.75 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.83 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.83 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 1.0 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 1.0 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 1.0 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 1.0 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474875 | n.1218G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474876 | n.1219T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 1.0 |