EBG00000313325 - n.308G>A
Drug resistance types
77 Sensitive
52 RR-TB
28 HR-TB
32 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 4 |
| lineage3 | 12 |
| lineage2.2.2 | 4 |
| lineage4.9 | 94 |
| lineage2.2.1 | 21 |
| lineage1.2.2.2 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.8 | 7 |
| lineage4.4.1.1 | 3 |
| lineage4.3.3 | 6 |
| lineage4.6.3 | 1 |
| 11 | |
| lineage4;lineage1.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4 | 4 |
| lineage4.6 | 1 |
| lineage4.5;lineage2.2 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2.1.2 | 3 |
| lineage4.6.1 | 3 |
| lineage4.6.1.2 | 1 |
| lineage4.6.1.1 | 6 |
| lineage4.3.4.1 | 1 |
| lineage4.1.1 | 3 |
| La1.8.1 | 2 |
| lineage5.1.1 | 2 |
| lineage6.2.1 | 1 |
| lineage4.1.1.3 | 6 |
| lineage4.1.2 | 2 |
| lineage2.2 | 8 |
| lineage4.8.1 | 1 |
| lineage4.9;lineage2.2.1 | 2 |
| lineage4.6.1;lineage3.1.1 | 1 |
| lineage3;lineage2.2 | 2 |
| lineage4.6.1;lineage3.1 | 2 |
| lineage3.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage2.2.2;lineage2.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.1.3.2 | 2 |
| lineage4.9;lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 232 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2027233 | RR-TB | lineage4.1.2.1 | None | ERR3275548 | Sensitive | lineage3 | nl | SRR6280216 | RR-TB | lineage2.2.2 | cn | ERR4816223 | Sensitive | lineage4.9 | None | SRR6280270 | Sensitive | lineage2.2.1 | cn | ERR2124090 | MDR-TB | lineage2.2.1 | None | ERR2124092 | HR-TB | lineage1.2.2.2 | None | ERR2124091 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2229358 | Other | lineage4.8 | None | ERR2124088 | Other | lineage4.4.1.1 | None | ERR2124089 | MDR-TB | lineage2.2.1 | None | SAMN02567685 | Pre-XDR-TB | lineage2.2.1 | None | ERR2512443 | Other | lineage4.8 | gb | ERR4817817 | Sensitive | lineage3 | None | ERR4817297 | Other | lineage4.8 | None | SRR4034618 | Sensitive | lineage4.3.3 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR245790 | Sensitive | None | SRR6280271 | Sensitive | lineage2.2.1 | cn | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4820845 | MDR-TB | lineage4.8 | None | ERR4820736 | Other | lineage4.1.2.1 | gb | SRR6280286 | Sensitive | lineage2.2.1 | None | ERR2514722 | Sensitive | lineage3 | gb | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR4821108 | Other | lineage4.6.2.2 | None | ERR2517457 | Sensitive | lineage3 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6046152 | Other | lineage4.9 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR6045764 | Sensitive | lineage4.9 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046609 | Sensitive | lineage4.9 | None | ERR4829108 | HR-TB | lineage4 | it | ERR4831631 | HR-TB | lineage4.9 | None | ERR4872193 | MDR-TB | lineage4.6 | None | ERR4831763 | HR-TB | lineage4.5;lineage2.2 | None | ERR4831837 | MDR-TB | lineage2.2.1 | None | ERR5162122 | HR-TB | lineage4.9 | None | ERR4831633 | RR-TB | lineage4.9;lineage2.2 | None | SRR6785282 | Other | lineage4.3.3 | None | ERR323035 | Sensitive | lineage4.9 | None | SRR7453031 | Sensitive | lineage2.2.1.2 | None | ERR5162127 | Sensitive | lineage4.9 | None | SRR7131160 | Sensitive | lineage3 | None | SRR7453034 | Sensitive | lineage2.2.1.2 | None | SRR7453032 | Sensitive | lineage2.2.1.2 | None | ERR10796619 | Other | lineage4.3.3 | None | SRR7535053 | Sensitive | lineage3 | None | SRR7535054 | Sensitive | lineage4.6.1 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535077 | MDR-TB | lineage4.6.1.2 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535080 | HR-TB | lineage4.8 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | ERR1023494 | Sensitive | lineage3 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796635 | Other | lineage4 | None | ERR10796623 | Other | lineage4.1.1 | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR403359 | Other | lineage2.2.1 | None | ERR3283015 | Sensitive | lineage4.9 | None | ERR3283049 | Sensitive | lineage4.9 | None | ERR3468549 | Sensitive | lineage4.9 | None | ERR3468601 | HR-TB | La1.8.1 | None | ERR3797084 | Sensitive | lineage4.9 | None | ERR3283053 | Other | lineage4.9 | None | ERR3468754 | Sensitive | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR405191 | Other | lineage4.9 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR4188218 | Sensitive | lineage4.9 | None | ERR4797141 | Sensitive | lineage3 | None | ERR473279 | Other | lineage4.9 | None | ERR4798523 | MDR-TB | lineage1.2.2.2 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR6197028 | Other | lineage4.9 | None | ERR736825 | Sensitive | lineage4.9 | None | ERR736850 | Sensitive | lineage4.9 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR751329 | Sensitive | lineage5.1.1 | None | ERR751332 | Sensitive | lineage6.2.1 | None | ERR983250 | RR-TB | lineage4.1.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR970451 | RR-TB | lineage4.1.2.1 | None | ERR970448 | RR-TB | lineage4.1.1.3 | None | ERR970458 | RR-TB | lineage4.1.1.3 | None | ERR970459 | RR-TB | lineage4.1.1 | None | ERR970457 | RR-TB | lineage4.1.1.3 | None | ERR970455 | RR-TB | lineage4.1.2 | None | ERR972802 | RR-TB | lineage4.1.1.3 | None | ERR972801 | RR-TB | lineage2.2.1.1 | None | ERR773804 | Sensitive | lineage4.9 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR970453 | RR-TB | lineage4.1.2 | None | SRR1013528 | Pre-XDR-TB | lineage2.2 | None | SRR1013527 | RR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013531 | MDR-TB | lineage4.9 | None | SRR1013530 | HR-TB | lineage4.9 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013599 | HR-TB | None | SRR1013617 | MDR-TB | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1013618 | MDR-TB | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR10315473 | MDR-TB | lineage4.8.1 | None | SRR1048885 | MDR-TB | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048982 | HR-TB | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1049041 | MDR-TB | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1062865 | HR-TB | lineage2.2.2 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1062868 | HR-TB | lineage4.9 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR1062869 | Pre-XDR-TB | lineage4.9 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1106670 | Other | lineage4.9 | None | SRR1062937 | HR-TB | lineage4.6.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR1140595 | Sensitive | lineage4.6.1.1 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1173293 | MDR-TB | lineage4.6.1;lineage3.1.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1173269 | Sensitive | lineage4.9 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | SRR1141261 | MDR-TB | lineage4.9 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1173190 | Sensitive | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173343 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173335 | Sensitive | lineage4.9 | None | SRR1173720 | Other | lineage4.9 | None | SRR1173416 | Other | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173380 | Pre-XDR-TB | lineage3;lineage2.2 | None | SRR1173508 | Sensitive | lineage4.9 | None | SRR1173565 | MDR-TB | lineage4.6.1;lineage3.1 | None | SRR1173705 | Other | lineage4.9 | None | SRR1180999 | Sensitive | lineage4.8 | None | SRR1173766 | Sensitive | lineage4.9 | None | SRR1173800 | Pre-XDR-TB | lineage3;lineage2.2 | None | SRR1173833 | Other | lineage4.9 | None | SRR1173865 | Sensitive | lineage4.9 | None | SRR1173764 | Sensitive | lineage4.9 | None | SRR1173768 | Sensitive | lineage4.9 | None | SRR1173799 | MDR-TB | lineage3.1.1 | None | SRR1173832 | MDR-TB | lineage4.6.1;lineage3.1 | None | SRR1174277 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180972 | MDR-TB | lineage2.2.1 | None | SRR13591376 | Sensitive | lineage4.3.2 | None | SRR12634543 | Sensitive | lineage4.8 | None | SRR13591377 | Sensitive | lineage4.1.1.3 | None | SRR13861262 | RR-TB | lineage4.9 | None | SRR13861154 | RR-TB | lineage4.9 | None | SRR13861218 | RR-TB | lineage4.9 | None | SRR13861255 | RR-TB | lineage4.9 | None | SRR13861140 | MDR-TB | lineage4.9 | None | SRR13861149 | RR-TB | lineage4.9 | None | SRR13861152 | Sensitive | lineage4.9 | None | SRR13861169 | RR-TB | lineage4.9 | None | SRR13861197 | RR-TB | lineage4.9 | None | SRR13861216 | RR-TB | lineage4.9 | None | SRR13861222 | RR-TB | lineage4.9 | None | SRR13861233 | RR-TB | lineage4.9 | None | SRR13861245 | RR-TB | lineage4.9 | None | SRR13861275 | Sensitive | lineage4.9 | None | SRR13861276 | RR-TB | lineage4.9 | None | SRR13861284 | RR-TB | lineage4.9 | None | SRR13861316 | RR-TB | lineage4.9 | None | SRR13861320 | RR-TB | lineage4.9 | None | SRR13861292 | RR-TB | lineage4.9 | None | SRR13861355 | RR-TB | lineage4.9 | None | SRR13861321 | RR-TB | lineage4.9 | None | SRR13861341 | RR-TB | lineage4.9 | None | SRR13861346 | RR-TB | lineage4.9 | None | SRR13861408 | MDR-TB | lineage4.9 | None | SRR13861393 | Sensitive | lineage4.9 | None | SRR13861402 | Other | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861437 | RR-TB | lineage4.9 | None | SRR13861444 | Sensitive | lineage4.9 | None | SRR13861451 | RR-TB | lineage4.9 | None | SRR13861529 | Sensitive | lineage4.9 | None | SRR13861501 | RR-TB | lineage4.9 | None | SRR13861506 | RR-TB | lineage4.9 | None | SRR13861524 | RR-TB | lineage4.9 | None | SRR13861547 | RR-TB | lineage4.9 | None | SRR13861543 | RR-TB | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR13861565 | RR-TB | lineage4.9 | None | SRR13861618 | RR-TB | lineage4.9 | None | SRR13861729 | RR-TB | lineage4.9 | None | SRR13861722 | RR-TB | lineage4.9 | None | SRR13861672 | Sensitive | lineage4.9 | None | SRR13861736 | RR-TB | lineage4.9 | None | SRR13861737 | RR-TB | lineage4.9 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR15368707 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR15368784 | Sensitive | lineage2.2.1.1 | None | SRR15368973 | Other | None | SRR16157045 | Sensitive | lineage4.9 | None | SRR15368751 | Sensitive | lineage2.2.1 | None | SRR16156291 | Other | lineage4.9 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR17567930 | Other | lineage4.4.1.1 | None | ERR176781 | Sensitive | lineage1.1.3.2 | None | SRR3105762 | HR-TB | None | ERR4814573 | Other | lineage1.1.3.2 | None | ERR2446544 | Sensitive | lineage3 | nl | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR164004 | Sensitive | lineage4.9;lineage4.3 | None | ERR1750930 | Sensitive | lineage4.1.1.3 | za | SAMN02381005 | Other | lineage4.6.1.1 | None | ERR4812968 | MDR-TB | lineage4.3.3 | None | ERR192070 | Other | None |
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