Run ID: ERR3283015
Sample name:
Date: 01-04-2023 01:17:27
Number of reads: 10629
Percentage reads mapped: 1.98
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 1.0 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 1.0 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 1.0 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 1.0 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 1.0 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 1.0 |
rpoC | 764450 | p.Gly361Arg | missense_variant | 1.0 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 1.0 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 1.0 |
rpoC | 764468 | p.Val367Ile | missense_variant | 1.0 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 1.0 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 1.0 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 1.0 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 1.0 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 1.0 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 1.0 |
rrs | 1472089 | n.244C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472266 | n.421C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472338 | n.493A>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472349 | n.504A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472374 | n.529T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472382 | n.537G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472390 | n.545T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472398 | n.553T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472751 | n.906A>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474825 | n.1168G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474828 | n.1171G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474832 | n.1176delG | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474875 | n.1218G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474876 | n.1219T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 1.0 |