EBG00000313339 - n.2798C>G
Drug resistance types
59 Sensitive
2 RR-TB
60 HR-TB
18 MDR-TB
30 Pre-XDR-TB
0 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.2;lineage4 | 7 |
| lineage3 | 10 |
| lineage4.5 | 5 |
| lineage4.9 | 28 |
| lineage4.8 | 7 |
| lineage4.4.1.2 | 1 |
| lineage2.2.1;lineage2.2.2 | 6 |
| lineage2.2.1 | 38 |
| lineage4.3.4.1 | 3 |
| lineage1.2.1.2.1 | 3 |
| lineage4 | 3 |
| lineage2.2.2 | 27 |
| lineage2 | 1 |
| lineage2.2.1.1 | 5 |
| lineage4.3.3 | 1 |
| lineage2.2.2;lineage4.9 | 2 |
| lineage4.8.1 | 3 |
| lineage4.1.2.1 | 12 |
| lineage4.1.1.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.4.2 | 5 |
| lineage4.6.2.2 | 5 |
| lineage4.2.1 | 1 |
| lineage2.2;lineage4.9 | 2 |
| La1.8.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1;lineage4 | 3 |
| lineage4.2.2.2 | 2 |
| lineage4.1.2 | 1 |
| lineage3.1.1 | 1 |
| lineage2;lineage4.9 | 2 |
| lineage1.2.2.2 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage4.6 | 1 |
| lineage4.6.5 | 1 |
| lineage2.2;lineage4 | 2 |
| lineage6.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 197 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013596 | Sensitive | lineage3 | None | SRR1013612 | Sensitive | lineage4.5 | None | SRR6046834 | Sensitive | lineage4.9 | None | ERR10796599 | Other | lineage4.8 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR15368707 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR14802013 | Sensitive | lineage4.3.4.1 | None | SRR6152910 | Sensitive | lineage1.2.1.2.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | SRR7131160 | Sensitive | lineage3 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR867554 | Other | lineage4.3.4.1 | None | DRR213597 | MDR-TB | lineage2.2.2 | None | ERR400443 | Sensitive | lineage1.2.1.2.1 | None | SRR1049040 | HR-TB | lineage2 | None | SRR1048988 | HR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SRR19303788 | Sensitive | lineage4.8 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | ERR3439294 | Sensitive | lineage4.9 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | ERR4814911 | Other | lineage4.3.3 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | SRR1202680 | Other | lineage4.9 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR11342675 | Pre-XDR-TB | lineage4.8.1 | None | SRR7070274 | Sensitive | lineage1.2.1.2.1 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4817194 | Sensitive | lineage4.1.2.1 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | SRR1202613 | Other | lineage4.9 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | ERR4799636 | Pre-XDR-TB | lineage2.2.1 | None | SRR1202628 | Sensitive | lineage4.9 | None | SRR16100231 | Other | lineage4 | None | ERR3283051 | Other | lineage4.9 | None | SRR1013610 | Sensitive | lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR19303792 | Sensitive | lineage4.1.2.1 | None | ERR1023494 | Sensitive | lineage3 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR10869267 | MDR-TB | lineage2.2.2 | None | SRR11349134 | Pre-XDR-TB | lineage4.8.1 | None | SRR1013600 | Sensitive | lineage2.2.1.1 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR19303779 | Sensitive | lineage4.8 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | DRR099689 | Sensitive | lineage1.1.1.1 | None | ERR4814932 | Other | lineage4.1.1.1 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4819423 | Other | lineage4.6.2.2 | None | ERR3283008 | Other | lineage4.9 | None | SRR1202503 | Sensitive | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SRR1208908 | Sensitive | lineage4.9 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR1013611 | Sensitive | lineage4.5 | None | SRR1013634 | MDR-TB | lineage2.2.2 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | SRR1013604 | HR-TB | lineage2.2.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR3275866 | Other | lineage4.1.2.1 | nl | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1013613 | Sensitive | lineage2.2.1 | None | SRR15508558 | Sensitive | lineage4.1.2.1 | None | ERR3283015 | Sensitive | lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR3797084 | Sensitive | lineage4.9 | None | SRR1013614 | Sensitive | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4815178 | Other | lineage4.8 | gb | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR1202733 | Sensitive | lineage4.9 | None | ERR4815870 | HR-TB | lineage4.6.2.2 | gb | SRR11342686 | MDR-TB | lineage4.8 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR5382721 | Other | La1.8.1 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SRR1208567 | Sensitive | lineage4.9 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | ERR4817294 | Other | lineage4.1.2 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1202583 | Sensitive | lineage4.9 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR7737820 | MDR-TB | lineage4.2.2.2 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1013553 | MDR-TB | lineage2.2.2 | None | SRR1208882 | Sensitive | lineage4.9 | None | ERR4187652 | Other | lineage4.9 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR19303933 | Other | lineage4.8 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | ERR4872193 | MDR-TB | lineage4.6 | None | SRR15368751 | Sensitive | lineage2.2.1 | None | SRR1208298 | Sensitive | lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR15368784 | Sensitive | lineage2.2.1.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR3276155 | Other | lineage4.1.2.1 | nl | ERR4818444 | Other | lineage4.6.5 | None | ERR867575 | Other | lineage4.9 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048852 | HR-TB | lineage2.2;lineage4.9 | None | SRR7069638 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049004 | HR-TB | lineage2.2.2 | None | ERR3275548 | Sensitive | lineage3 | nl | SRR19303775 | Sensitive | lineage3 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR1048983 | HR-TB | lineage2.2.1.1 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013633 | MDR-TB | lineage2.2.2 | None | ERR3276277 | MDR-TB | lineage2.2.1 | nl | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1173720 | Sensitive | lineage4.9 | None | ERR3283049 | Sensitive | lineage4.9 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | ERR400350 | Sensitive | lineage4.9 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR2517457 | Sensitive | lineage3 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316299 | Sensitive | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR1193714 | Sensitive | lineage4.3.4.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048981 | HR-TB | lineage3 | None | ERR4818128 | Other | lineage4.1.2.1 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR17567930 | Sensitive | lineage4.4.1.1 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR1049023 | HR-TB | lineage4.9 | None | SRR19303774 | Sensitive | lineage4.1.2.1 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR4819641 | Other | lineage4.6.2.2 | None | ERR2446544 | Sensitive | lineage3 | nl | SRR1173416 | Sensitive | lineage4.9 | None | SRR6046609 | Sensitive | lineage4.9 | None |
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