Run ID: SRR12634609
Sample name:
Date: 03-04-2023 06:56:59
Number of reads: 1546547
Percentage reads mapped: 54.05
Strain: lineage3.1.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 | 1.0 |
lineage3.1.1 | East-African-Indian | CAS1-Kili | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.26 | rifampicin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.66 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.46 | kanamycin, capreomycin, aminoglycosides, amikacin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
embB | 4247429 | p.Met306Val | missense_variant | 1.0 | ethambutol |
ethA | 4326284 | p.Leu397Arg | missense_variant | 0.93 | ethionamide |
gid | 4408087 | c.115delC | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8414 | c.1113C>T | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.24 |
mshA | 576211 | c.864C>A | synonymous_variant | 0.21 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.12 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 0.12 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.12 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.12 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.27 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.24 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.24 |
rpoB | 761046 | p.Ile414Val | missense_variant | 0.19 |
rpoB | 761051 | c.1245G>T | synonymous_variant | 0.27 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.29 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.27 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.29 |
rpoB | 761063 | c.1257C>G | synonymous_variant | 0.29 |
rpoB | 761087 | c.1281C>G | synonymous_variant | 0.25 |
rpoB | 761088 | c.1282_1284delAGCinsTCG | synonymous_variant | 0.25 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.22 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.24 |
rpoB | 761126 | c.1320G>C | synonymous_variant | 0.23 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.2 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.2 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.24 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.19 |
rpoB | 761180 | c.1374A>G | synonymous_variant | 0.22 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.21 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.22 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.2 |
rpoB | 761196 | p.Leu464Val | missense_variant | 0.2 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.19 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.17 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.13 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 0.19 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.16 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.16 |
rpoB | 763005 | p.Cys1067Gly | missense_variant | 0.15 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.15 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.15 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.15 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.15 |
rpoC | 763043 | c.-327G>C | upstream_gene_variant | 0.14 |
rpoC | 763052 | c.-318G>C | upstream_gene_variant | 0.13 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.13 |
rpoC | 763058 | c.-312C>G | upstream_gene_variant | 0.19 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.18 |
rpoB | 763075 | p.Thr1090Ile | missense_variant | 0.2 |
rpoC | 763088 | c.-282C>G | upstream_gene_variant | 0.15 |
rpoC | 763462 | c.93G>C | synonymous_variant | 0.12 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.17 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.17 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.16 |
rpoC | 763504 | c.135C>T | synonymous_variant | 0.25 |
rpoC | 763511 | p.Cys48Gly | missense_variant | 0.23 |
rpoC | 763517 | p.Lys50Gln | missense_variant | 0.24 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.23 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.25 |
rpoC | 763532 | p.Thr55Ser | missense_variant | 0.22 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.33 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.33 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.37 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.39 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.39 |
rpoC | 763614 | c.246_251delGACCCG | disruptive_inframe_deletion | 0.34 |
rpoC | 763622 | p.Ala85Thr | missense_variant | 0.31 |
rpoC | 763626 | c.258_259insAGCTCG | conservative_inframe_insertion | 0.28 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.3 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.33 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.32 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.31 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.2 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.14 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.2 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.22 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.24 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.27 |
rpoC | 764524 | c.1155C>G | synonymous_variant | 0.24 |
rpoC | 764533 | c.1164C>T | synonymous_variant | 0.3 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.32 |
rpoC | 764548 | c.1179G>T | synonymous_variant | 0.32 |
rpoC | 764549 | p.Pro394Thr | missense_variant | 0.32 |
rpoC | 764561 | p.Pro398Ala | missense_variant | 0.33 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.33 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.39 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.41 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.42 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.47 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.45 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.38 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.35 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.33 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.29 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.27 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.23 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.16 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472507 | n.662C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472571 | n.726G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472645 | n.800G>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472660 | n.815T>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472666 | n.821G>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472686 | n.841G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472694 | n.849C>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.66 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.61 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473269 | n.1424C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.63 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.61 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.61 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473320 | n.1475G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474265 | n.608G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1474275 | n.618T>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474280 | n.623C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474281 | n.624A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474291 | n.635_645delTTCCTCTCCGG | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474305 | n.648G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474308 | n.653_654delTG | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474316 | n.659T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474317 | n.660G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474351 | n.694G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474359 | n.702C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474414 | n.757C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474444 | n.787G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474451 | n.794T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474454 | n.797G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474466 | n.809G>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1474488 | n.831G>C | non_coding_transcript_exon_variant | 0.51 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474516 | n.859C>G | non_coding_transcript_exon_variant | 0.59 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.66 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1474722 | n.1065T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474723 | n.1066G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474736 | n.1079C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474751 | n.1094G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474770 | n.1113G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474800 | n.1143T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474830 | n.1173A>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474920 | n.1263G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474935 | n.1278A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475672 | n.2015C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475692 | n.2035G>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.52 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.66 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.63 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.61 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476076 | n.2419A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476080 | n.2423T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476082 | n.2425T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476103 | n.2446C>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476540 | n.2883C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476544 | n.2887T>A | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476566 | n.2909A>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.26 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.15 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.15 |
rpsA | 1833781 | c.240T>C | synonymous_variant | 0.12 |
rpsA | 1833784 | c.243C>G | synonymous_variant | 0.12 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.15 |
rpsA | 1833808 | c.267G>C | synonymous_variant | 0.15 |
rpsA | 1833815 | p.Thr92Pro | missense_variant | 0.15 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.14 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.14 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.14 |
rpsA | 1833955 | c.414G>C | synonymous_variant | 0.12 |
rpsA | 1833959 | p.Leu140Val | missense_variant | 0.12 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.13 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.14 |
rpsA | 1833997 | c.456G>C | synonymous_variant | 0.14 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.13 |
rpsA | 1834004 | p.Met155Leu | missense_variant | 0.13 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.13 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.12 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.13 |
rpsA | 1834026 | p.Gln162Pro | missense_variant | 0.13 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.13 |
rpsA | 1834378 | c.837T>G | synonymous_variant | 0.12 |
rpsA | 1834384 | c.843A>G | synonymous_variant | 0.12 |
rpsA | 1834397 | p.His286Asp | missense_variant | 0.12 |
rpsA | 1834411 | c.870T>G | synonymous_variant | 0.13 |
rpsA | 1834431 | p.Val297Ala | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170461 | p.Gly51Glu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448955 | c.454delG | frameshift_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4039714 | p.Tyr331His | missense_variant | 0.15 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.17 |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.17 |
clpC1 | 4039736 | c.969C>G | synonymous_variant | 0.17 |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.16 |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.16 |
clpC1 | 4039760 | c.945T>C | synonymous_variant | 0.15 |
clpC1 | 4039766 | c.939T>G | synonymous_variant | 0.14 |
clpC1 | 4039772 | p.Lys311His | missense_variant | 0.14 |
clpC1 | 4039775 | c.930G>C | synonymous_variant | 0.15 |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.14 |
clpC1 | 4039793 | c.912C>G | synonymous_variant | 0.16 |
clpC1 | 4039817 | c.888A>C | synonymous_variant | 0.17 |
clpC1 | 4039820 | c.885T>G | synonymous_variant | 0.16 |
clpC1 | 4039826 | c.879C>G | synonymous_variant | 0.14 |
clpC1 | 4039829 | c.874_876delTTGinsCTC | synonymous_variant | 0.12 |
embC | 4240172 | p.Val104Met | missense_variant | 1.0 |
embC | 4241562 | p.Arg567His | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4328154 | c.-681C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |