Rv0667 - c.1374A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
16 Sensitive
20 RR-TB
25 HR-TB
11 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 46 |
| lineage1.1.2 | 1 |
| lineage3 | 2 |
| lineage2.2.1 | 5 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8 | 8 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.8.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.9;lineage7 | 4 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.2;lineage4.9 | 3 |
| lineage3.1.3 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| 3 | |
| lineage4.3.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| lineage4.2.2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 113 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769450 | Other | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR13285191 | Sensitive | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4798823 | HR-TB | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR6358991 | HR-TB | None | ERR502473 | RR-TB | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR3283032 | Other | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4817069 | RR-TB | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR6046878 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1196478 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR28351488 | MDR-TB | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None |
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