TB-Profiler result

Run: ERR4798139
Summary

Run ID: ERR4798139

Sample name:

Date: 01-04-2023 08:09:04

Number of reads: 2127162

Percentage reads mapped: 86.75

Strain: lineage1.1.2

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage1 Indo-Oceanic EAI RD239 0.97
lineage1.1 Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239 1.0
lineage1.1.2 Indo-Oceanic EAI3;EAI5 RD239 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6112 p.Met291Ile missense_variant 0.98
gyrB 6124 c.885C>T synonymous_variant 0.97
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8452 p.Ala384Val missense_variant 0.89
gyrA 8786 c.1485T>C synonymous_variant 0.13
gyrA 8813 c.1512C>T synonymous_variant 0.14
gyrA 8818 p.Ser506Asn missense_variant 0.14
gyrA 8870 c.1569G>C synonymous_variant 0.13
gyrA 8897 c.1596T>C synonymous_variant 0.13
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 0.98
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575884 c.537G>C synonymous_variant 0.14
mshA 575887 c.540G>T synonymous_variant 0.14
mshA 575893 c.546C>G synonymous_variant 0.14
mshA 575896 c.549G>T synonymous_variant 0.14
mshA 575905 c.558G>C synonymous_variant 0.14
mshA 575914 c.567C>G synonymous_variant 0.13
mshA 575926 c.579A>G synonymous_variant 0.13
mshA 576108 p.Ala254Gly missense_variant 0.29
rpoB 760591 p.Val262Ala missense_variant 0.14
rpoB 760634 c.828T>C synonymous_variant 0.12
rpoB 761057 c.1251G>C synonymous_variant 0.15
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.15
rpoB 761102 c.1296A>G synonymous_variant 0.15
rpoB 761129 c.1323G>C synonymous_variant 0.17
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.17
rpoB 761150 c.1344A>C synonymous_variant 0.17
rpoB 761165 c.1359G>A synonymous_variant 0.16
rpoB 761168 c.1362C>G synonymous_variant 0.17
rpoB 761171 c.1365C>T synonymous_variant 0.17
rpoB 761180 c.1374A>G synonymous_variant 0.15
rpoB 761189 c.1383T>C synonymous_variant 0.14
rpoB 761249 c.1443A>G synonymous_variant 0.14
rpoB 761252 c.1446C>T synonymous_variant 0.16
rpoB 761261 c.1455G>T synonymous_variant 0.16
rpoB 761264 c.1458C>G synonymous_variant 0.14
rpoB 761282 c.1476C>G synonymous_variant 0.16
rpoB 761286 c.1480C>T synonymous_variant 0.17
rpoB 761300 c.1494G>A synonymous_variant 0.19
rpoB 761327 c.1521A>G synonymous_variant 0.19
rpoB 761354 c.1548C>T synonymous_variant 0.25
rpoB 761360 c.1554T>C synonymous_variant 0.22
rpoB 761363 c.1557C>T synonymous_variant 0.22
rpoB 761367 p.Glu521Gln missense_variant 0.21
rpoB 761374 p.Val523Asp missense_variant 0.2
rpoB 761378 c.1572C>T synonymous_variant 0.2
rpoB 761393 c.1587G>A synonymous_variant 0.19
rpoB 761408 c.1602G>C synonymous_variant 0.16
rpoB 761414 c.1608A>G synonymous_variant 0.15
rpoC 762758 c.-612G>C upstream_gene_variant 0.14
rpoC 762782 c.-588T>C upstream_gene_variant 0.14
rpoC 762788 c.-582G>C upstream_gene_variant 0.14
rpoB 762789 p.Leu995Met missense_variant 0.14
rpoC 762794 c.-576C>G upstream_gene_variant 0.14
rpoB 762795 p.Asp997Asn missense_variant 0.14
rpoC 762800 c.-570C>A upstream_gene_variant 0.15
rpoC 762812 c.-558C>G upstream_gene_variant 0.16
rpoB 762814 p.Met1003Arg missense_variant 0.16
rpoC 762818 c.-552C>G upstream_gene_variant 0.16
rpoC 762824 c.-546C>T upstream_gene_variant 0.16
rpoC 762827 c.-543G>C upstream_gene_variant 0.17
rpoC 762833 c.-537C>T upstream_gene_variant 0.17
rpoC 762836 c.-534C>G upstream_gene_variant 0.17
rpoC 762857 c.-513C>G upstream_gene_variant 0.19
rpoC 762860 c.-510G>C upstream_gene_variant 0.19
rpoC 762890 c.-480C>T upstream_gene_variant 0.16
rpoC 762962 c.-408C>T upstream_gene_variant 0.15
rpoC 763028 c.-342T>C upstream_gene_variant 0.15
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.14
rpoC 763040 c.-330C>G upstream_gene_variant 0.16
rpoC 763082 c.-288C>G upstream_gene_variant 0.2
rpoC 763085 c.-285C>G upstream_gene_variant 0.2
rpoC 763115 c.-255T>C upstream_gene_variant 0.15
rpoC 763136 c.-234C>T upstream_gene_variant 0.14
rpoC 763528 c.159G>A synonymous_variant 0.16
rpoC 763546 c.177A>G synonymous_variant 0.14
rpoC 763884 p.Ala172Val missense_variant 0.91
rpoC 763886 c.517C>A synonymous_variant 0.91
rpoC 763969 c.600C>T synonymous_variant 0.17
rpoC 763978 c.609C>T synonymous_variant 0.2
rpoC 763991 p.Ile208Leu missense_variant 0.17
rpoC 763996 c.627T>C synonymous_variant 0.17
rpoC 764002 c.633C>G synonymous_variant 0.18
rpoC 764005 c.636G>C synonymous_variant 0.18
rpoC 764011 c.642T>C synonymous_variant 0.17
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.16
rpoC 764040 p.Ser224Thr missense_variant 0.15
rpoC 764044 c.675T>G synonymous_variant 0.15
rpoC 764059 c.690G>C synonymous_variant 0.16
rpoC 764083 c.714A>G synonymous_variant 0.14
rpoC 764521 c.1152T>C synonymous_variant 0.15
rpoC 764536 c.1167G>C synonymous_variant 0.14
rpoC 764554 c.1185C>T synonymous_variant 0.18
rpoC 764575 c.1206T>G synonymous_variant 0.15
rpoC 764578 c.1209C>G synonymous_variant 0.15
rpoC 764593 c.1224C>T synonymous_variant 0.18
rpoC 764611 c.1242G>T synonymous_variant 0.16
rpoC 764626 c.1257C>T synonymous_variant 0.17
rpoC 764737 c.1368G>C synonymous_variant 0.14
rpoC 764764 c.1395T>C synonymous_variant 0.14
rpoC 764782 c.1413C>T synonymous_variant 0.16
rpoC 764797 c.1428G>C synonymous_variant 0.15
rpoC 764809 c.1440C>T synonymous_variant 0.14
rpoC 764824 c.1455T>C synonymous_variant 0.14
rpoC 765040 c.1671T>C synonymous_variant 0.14
rpoC 765047 c.1678T>C synonymous_variant 0.13
rpoC 765052 c.1683C>G synonymous_variant 0.14
rpoC 765053 p.Ser562Thr missense_variant 0.14
rpoC 765171 p.Pro601Leu missense_variant 1.0
rpoC 765370 c.2001G>C synonymous_variant 0.14
rpoC 765421 c.2052C>G synonymous_variant 0.13
rpoC 765541 c.2172C>G synonymous_variant 0.16
rpoC 765547 c.2178C>A synonymous_variant 0.15
rpoC 765728 p.Gln787Lys missense_variant 0.16
rpoC 765734 c.2365T>C synonymous_variant 0.16
rpoC 765739 c.2370G>T synonymous_variant 0.16
rpoC 765751 c.2382C>G synonymous_variant 0.14
rpoC 765753 p.Asp795Ala missense_variant 0.13
rpoC 765772 c.2403C>G synonymous_variant 0.14
rpoC 765787 c.2418C>T synonymous_variant 0.14
rpoC 765793 c.2424C>G synonymous_variant 0.14
rpoC 765796 c.2427C>T synonymous_variant 0.14
rpoC 765811 c.2442T>C synonymous_variant 0.14
rpoC 765844 c.2475C>T synonymous_variant 0.14
rpoC 765850 c.2481G>C synonymous_variant 0.14
rpoC 766366 c.2997C>T synonymous_variant 0.13
rpoC 766369 c.3000C>G synonymous_variant 0.13
rpoC 766384 c.3015A>G synonymous_variant 0.14
rpoC 766390 c.3021C>T synonymous_variant 0.15
rpoC 766408 c.3039C>T synonymous_variant 0.13
rpoC 766426 c.3057C>T synonymous_variant 0.15
rpoC 766447 c.3078T>C synonymous_variant 0.14
rpoC 766657 c.3288A>G synonymous_variant 0.16
rpoC 766666 c.3297C>T synonymous_variant 0.14
rpoC 766672 c.3303T>C synonymous_variant 0.13
rpoC 766774 c.3405T>C synonymous_variant 0.14
rpoC 766963 c.3594T>C synonymous_variant 0.16
rpoC 766978 c.3609C>A synonymous_variant 0.18
rpoC 766981 c.3612T>C synonymous_variant 0.18
rpoC 766996 c.3627C>T synonymous_variant 0.22
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.24
rpoC 767059 c.3690T>G synonymous_variant 0.23
rpoC 767062 c.3693C>A synonymous_variant 0.22
rpoC 767098 c.3729T>C synonymous_variant 0.22
rpoC 767107 c.3738C>T synonymous_variant 0.22
rpoC 767119 c.3750A>G synonymous_variant 0.18
rpoC 767134 c.3765C>A synonymous_variant 0.19
rpoC 767152 c.3783T>G synonymous_variant 0.14
rpoC 767158 c.3789T>A synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 0.99
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 0.13
rpsL 781892 c.333A>G synonymous_variant 0.16
rpsL 781898 c.339A>T synonymous_variant 0.16
rpsL 781916 c.357T>C synonymous_variant 0.18
rpsL 781929 p.Gly124Ser missense_variant 0.2
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.19
rplC 801222 c.414T>C synonymous_variant 0.13
rplC 801246 c.438C>T synonymous_variant 0.15
rplC 801252 c.444G>C synonymous_variant 0.16
rplC 801255 c.447C>T synonymous_variant 0.17
rplC 801267 c.459A>T synonymous_variant 0.17
rplC 801270 c.462T>C synonymous_variant 0.16
rplC 801276 c.468G>T synonymous_variant 0.15
rplC 801279 c.471G>A synonymous_variant 0.15
rplC 801285 c.477G>C synonymous_variant 0.14
rplC 801288 c.480G>C synonymous_variant 0.14
fbiC 1303377 p.Asp149Glu missense_variant 0.99
fbiC 1304502 c.1572G>A synonymous_variant 0.15
fbiC 1304520 c.1590A>G synonymous_variant 0.16
fbiC 1304526 c.1596T>G synonymous_variant 0.16
fbiC 1304538 c.1608C>A synonymous_variant 0.16
fbiC 1304544 c.1614T>C synonymous_variant 0.16
fbiC 1304545 p.Val539Thr missense_variant 0.17
fbiC 1304550 c.1620C>T synonymous_variant 0.17
fbiC 1304559 p.Glu543Asp missense_variant 0.18
fbiC 1304562 c.1632G>C synonymous_variant 0.18
fbiC 1304565 c.1635C>G synonymous_variant 0.18
fbiC 1304568 c.1638T>C synonymous_variant 0.18
fbiC 1304574 c.1644C>G synonymous_variant 0.18
fbiC 1304580 c.1650T>C synonymous_variant 0.15
fbiC 1304937 c.2007G>C synonymous_variant 0.14
fbiC 1304946 c.2016G>C synonymous_variant 0.14
fbiC 1304958 c.2028T>G synonymous_variant 0.12
Rv1258c 1406503 p.Val280Leu missense_variant 1.0
embR 1417019 p.Cys110Tyr missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.14
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.14
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.14
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.13
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.14
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.23
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.23
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.15
rrl 1473676 n.19G>A non_coding_transcript_exon_variant 0.16
rrl 1473707 n.50T>C non_coding_transcript_exon_variant 0.24
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.25
rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.2
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.2
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.17
rrl 1473861 n.205dupC non_coding_transcript_exon_variant 0.88
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.14
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.14
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.21
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.2
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.19
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.19
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.18
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.18
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.24
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.23
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.19
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.15
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.17
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.18
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.12
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.12
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.21
rrl 1475999 n.2342G>T non_coding_transcript_exon_variant 0.21
rrl 1476032 n.2375C>T non_coding_transcript_exon_variant 0.47
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.47
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.47
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.44
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.41
rrl 1476047 n.2390G>A non_coding_transcript_exon_variant 0.41
rrl 1476077 n.2420T>C non_coding_transcript_exon_variant 0.33
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.26
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.26
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.29
rrl 1476104 n.2448delG non_coding_transcript_exon_variant 0.27
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.23
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.15
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.15
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.15
rrl 1476256 n.2599A>C non_coding_transcript_exon_variant 0.14
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.15
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.16
rrl 1476595 n.2938C>T non_coding_transcript_exon_variant 0.16
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.16
rrl 1476602 n.2945G>A non_coding_transcript_exon_variant 0.16
rrl 1476608 n.2951C>T non_coding_transcript_exon_variant 0.16
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.15
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.16
inhA 1674801 c.600T>C synonymous_variant 0.13
inhA 1674813 c.612C>T synonymous_variant 0.14
inhA 1674816 c.615T>C synonymous_variant 0.14
inhA 1674846 p.Ile215Met missense_variant 0.15
inhA 1674870 c.669T>C synonymous_variant 0.12
rpsA 1833589 c.48A>T synonymous_variant 0.14
rpsA 1833595 c.54T>G synonymous_variant 0.15
rpsA 1833949 c.408T>C synonymous_variant 0.13
rpsA 1834306 c.765T>C synonymous_variant 0.14
rpsA 1834411 c.870T>C synonymous_variant 0.14
rpsA 1834417 c.876G>C synonymous_variant 0.14
rpsA 1834423 c.882G>T synonymous_variant 0.14
rpsA 1834432 c.891G>T synonymous_variant 0.13
rpsA 1834528 c.987T>C synonymous_variant 0.13
rpsA 1834546 c.1005T>C synonymous_variant 0.12
rpsA 1834606 c.1065C>T synonymous_variant 0.14
rpsA 1834609 c.1068T>C synonymous_variant 0.14
rpsA 1834612 c.1071G>A synonymous_variant 0.14
rpsA 1834633 c.1092A>G synonymous_variant 0.15
rpsA 1834639 c.1098T>C synonymous_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2167983 p.Gly877Asp missense_variant 1.0
PPE35 2169636 p.Ser326Thr missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518594 c.480C>G synonymous_variant 0.14
kasA 2518606 c.492G>C synonymous_variant 0.15
kasA 2518609 p.Met165Ile missense_variant 0.15
kasA 2518618 c.504G>A synonymous_variant 0.2
kasA 2518621 c.507G>C synonymous_variant 0.2
kasA 2518624 c.510C>G synonymous_variant 0.2
kasA 2518627 c.513T>C synonymous_variant 0.21
kasA 2518639 c.525G>C synonymous_variant 0.3
kasA 2518642 c.528A>G synonymous_variant 0.29
kasA 2518645 c.531G>C synonymous_variant 0.29
kasA 2518651 c.537C>G synonymous_variant 0.31
kasA 2518657 c.543G>C synonymous_variant 0.3
kasA 2518663 c.549T>C synonymous_variant 0.26
kasA 2518672 c.558G>C synonymous_variant 0.24
kasA 2518678 c.564C>T synonymous_variant 0.24
kasA 2518687 p.Asp191Glu missense_variant 0.21
kasA 2518711 c.597A>G synonymous_variant 0.23
kasA 2518717 c.603C>G synonymous_variant 0.23
kasA 2518747 c.633C>G synonymous_variant 0.24
kasA 2518778 p.Glu222Gln missense_variant 0.14
ahpC 2726051 c.-142G>A upstream_gene_variant 1.0
ahpC 2726090 c.-103C>T upstream_gene_variant 1.0
ribD 2987449 p.Glu204Ala missense_variant 1.0
Rv2752c 3064632 c.1560C>T synonymous_variant 1.0
Rv2752c 3066390 c.-199C>G upstream_gene_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448714 p.Asp71His missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474597 c.591C>A synonymous_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3877818 c.690A>G synonymous_variant 0.15
rpoA 3877839 c.669G>C synonymous_variant 0.18
rpoA 3877857 c.651G>A synonymous_variant 0.15
rpoA 3877866 c.642G>C synonymous_variant 0.15
rpoA 3878022 c.486T>C synonymous_variant 0.14
rpoA 3878025 c.483C>T synonymous_variant 0.15
rpoA 3878028 c.480G>C synonymous_variant 0.15
rpoA 3878031 c.477T>C synonymous_variant 0.15
rpoA 3878043 c.465G>C synonymous_variant 0.15
rpoA 3878046 c.462T>C synonymous_variant 0.15
rpoA 3878049 c.459G>T synonymous_variant 0.15
rpoA 3878055 c.453A>G synonymous_variant 0.22
rpoA 3878061 c.447G>C synonymous_variant 0.22
rpoA 3878070 c.438T>C synonymous_variant 0.21
rpoA 3878073 c.435C>T synonymous_variant 0.21
rpoA 3878076 c.432C>T synonymous_variant 0.22
rpoA 3878079 c.429C>T synonymous_variant 0.22
rpoA 3878082 c.426T>C synonymous_variant 0.21
rpoA 3878103 c.405A>G synonymous_variant 0.24
rpoA 3878106 c.402G>C synonymous_variant 0.25
rpoA 3878118 c.390T>C synonymous_variant 0.24
rpoA 3878126 c.382C>T synonymous_variant 0.23
rpoA 3878130 c.378C>G synonymous_variant 0.21
rpoA 3878157 c.351C>G synonymous_variant 0.17
rpoA 3878169 c.339G>C synonymous_variant 0.17
rpoA 3878184 c.324C>T synonymous_variant 0.16
rpoA 3878187 c.321C>G synonymous_variant 0.16
rpoA 3878193 c.315T>C synonymous_variant 0.17
rpoA 3878217 c.291A>G synonymous_variant 0.14
rpoA 3878247 c.261G>C synonymous_variant 0.15
rpoA 3878262 p.Ser82Gly missense_variant 0.18
rpoA 3878271 c.237T>C synonymous_variant 0.23
rpoA 3878283 p.Glu75Asp missense_variant 0.24
rpoA 3878295 c.213A>G synonymous_variant 0.22
rpoA 3878298 c.210A>G synonymous_variant 0.22
rpoA 3878304 c.204G>C synonymous_variant 0.21
rpoA 3878313 c.195G>C synonymous_variant 0.22
rpoA 3878322 c.186A>G synonymous_variant 0.24
rpoA 3878331 c.177A>G synonymous_variant 0.23
rpoA 3878334 c.174T>C synonymous_variant 0.22
rpoA 3878337 c.171T>C synonymous_variant 0.22
rpoA 3878355 c.153C>G synonymous_variant 0.2
rpoA 3878364 c.144A>C synonymous_variant 0.18
rpoA 3878385 c.123C>G synonymous_variant 0.2
rpoA 3878391 c.117T>G synonymous_variant 0.19
rpoA 3878403 c.105C>T synonymous_variant 0.14
clpC1 4038647 c.2058T>G synonymous_variant 0.14
clpC1 4038658 p.Lys683Gln missense_variant 0.15
clpC1 4038661 p.Ser682Thr missense_variant 0.15
clpC1 4038662 c.2043T>C synonymous_variant 0.14
clpC1 4038671 c.2034T>C synonymous_variant 0.21
clpC1 4038683 c.2022T>C synonymous_variant 0.22
clpC1 4038692 c.2013C>G synonymous_variant 0.21
clpC1 4038695 c.2010C>G synonymous_variant 0.21
clpC1 4038698 c.2007C>T synonymous_variant 0.21
clpC1 4038701 c.2004G>C synonymous_variant 0.21
clpC1 4038704 c.2001T>C synonymous_variant 0.21
clpC1 4038713 c.1992T>C synonymous_variant 0.21
clpC1 4038740 c.1965G>C synonymous_variant 0.2
clpC1 4038749 c.1956C>T synonymous_variant 0.17
clpC1 4038782 c.1923G>C synonymous_variant 0.19
clpC1 4038790 c.1915C>T synonymous_variant 0.17
clpC1 4038812 c.1893T>C synonymous_variant 0.13
clpC1 4038845 c.1860G>C synonymous_variant 0.14
clpC1 4038860 c.1845G>C synonymous_variant 0.13
clpC1 4038878 c.1827A>G synonymous_variant 0.15
clpC1 4038884 c.1821C>T synonymous_variant 0.14
clpC1 4038905 c.1800A>C synonymous_variant 0.15
clpC1 4038908 c.1797C>G synonymous_variant 0.15
clpC1 4038914 c.1791G>C synonymous_variant 0.15
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.14
clpC1 4039124 c.1581C>T synonymous_variant 0.14
clpC1 4039328 c.1377A>C synonymous_variant 0.13
clpC1 4039338 p.Thr456Gln missense_variant 0.15
clpC1 4039553 c.1152C>A synonymous_variant 0.15
clpC1 4039556 c.1149G>C synonymous_variant 0.14
clpC1 4040267 c.438A>G synonymous_variant 0.15
clpC1 4040517 p.Val63Ala missense_variant 0.89
clpC1 4040546 c.159G>T synonymous_variant 0.14
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241042 p.Asn394Asp missense_variant 0.95
embC 4241567 p.Ile569Val missense_variant 0.14
embC 4241587 c.1725C>G synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243848 p.Val206Met missense_variant 1.0
embB 4245785 c.-729G>C upstream_gene_variant 0.14
embA 4245969 p.Pro913Ser missense_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4268156 c.681C>T synonymous_variant 0.94
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4326654 p.Glu274Lys missense_variant 1.0
whiB6 4338224 c.297delC frameshift_variant 1.0
whiB6 4338301 p.Gly74Glu missense_variant 0.99
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338603 c.-82C>T upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 1.0