Rv3596c - c.1780_1782delCTAinsTTG
Drug resistance types
17 Sensitive
2 RR-TB
27 HR-TB
21 MDR-TB
3 Pre-XDR-TB
3 XDR-TB
140 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 10 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3 | 6 |
| lineage4.9 | 43 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 20 |
| La3;lineage4.9 | 5 |
| lineage4.8 | 8 |
| lineage4.2.2.2 | 1 |
| lineage3.1;lineage4.9 | 1 |
| 29 | |
| lineage4 | 3 |
| lineage4.1.1.3 | 5 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage6 | 2 |
| lineage4.6.2.2 | 2 |
| lineage5.2 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.1 | 3 |
| lineage4.9;lineage6.3 | 8 |
| lineage4.1.2.1 | 9 |
| M.canetti;lineage2.2 | 2 |
| lineage4.7 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 3 |
| lineage1.1.2 | 2 |
| lineage4.1.2 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.3 | 2 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage1.1.3.2 | 1 |
| lineage4.6.1 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1 | 2 |
| lineage6.3.1 | 1 |
| lineage1.1.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage3.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 213 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR28045133 | Sensitive | lineage3 | None | SRR29772570 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29772760 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR12015085 | Other | lineage4.8 | None | SRR29051077 | Other | lineage4.9 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR161037 | Other | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811142 | RR-TB | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12006550 | Sensitive | None | ERR4817893 | Other | lineage4.8 | None | ERR9787165 | Other | lineage6 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR9117709 | Other | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR212033 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR21690574 | Other | lineage4.1.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR7496523 | Other | lineage4.7 | None | ERR4818615 | Sensitive | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR1196768 | MDR-TB | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175074 | Other | None | ERR4815604 | Other | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR7496517 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | SRR15014682 | MDR-TB | lineage4.8 | None | ERR4797201 | Other | None | ERR4800341 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR4810741 | HR-TB | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR3675236 | Other | None | ERR7821163 | Other | lineage2.2.1 | None | SRR7535086 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675549 | Other | lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR176751 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786843 | Other | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1173633 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR12015084 | Other | lineage4.8 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675214 | Other | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3416776 | Other | lineage2.1 | None | SRR1196494 | MDR-TB | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1169249 | Other | lineage4.9 | None | ERR1023302 | MDR-TB | lineage3 | None | ERR11049020 | Other | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | ERR212123 | Other | lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4811075 | Other | None | SRR29050770 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR502912 | Other | lineage2.2.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR9786526 | Other | lineage4.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9896144 | Other | lineage3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29051093 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR9117721 | HR-TB | None | ERR9787336 | RR-TB | lineage6 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR28119777 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR29603691 | Sensitive | lineage3 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR29097037 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR2514821 | Sensitive | lineage2.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6044855 | Sensitive | lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | SRR29051043 | Other | lineage4.3.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176651 | Other | lineage4.9 | None |
|---|
