TB-Profiler result

Run: ERR4817735
Summary

Run ID: ERR4817735

Sample name:

Date: 01-04-2023 15:10:00

Number of reads: 2100820

Percentage reads mapped: 69.56

Strain: lineage4.8

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.97
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.57 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.15 kanamycin, capreomycin, aminoglycosides, amikacin
embB 4247448 p.His312Arg missense_variant 0.16 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5078 c.-162_-161insG upstream_gene_variant 0.85
gyrB 5827 c.588G>A synonymous_variant 0.15
gyrB 6115 c.876A>G synonymous_variant 0.22
gyrB 6123 p.Ala295Gly missense_variant 0.28
gyrB 6127 c.888G>C synonymous_variant 0.28
gyrB 6130 c.891T>C synonymous_variant 0.3
gyrB 6136 c.897G>A synonymous_variant 0.32
gyrB 6139 c.900G>C synonymous_variant 0.4
gyrB 6196 c.957C>T synonymous_variant 0.35
gyrB 6238 c.999G>A synonymous_variant 0.15
gyrB 6242 p.Arg335Lys missense_variant 0.17
gyrB 6250 c.1011A>G synonymous_variant 0.23
gyrB 6256 c.1017G>A synonymous_variant 0.24
gyrB 6268 c.1029C>G synonymous_variant 0.24
gyrB 6280 c.1041T>C synonymous_variant 0.21
gyrB 6286 c.1047T>C synonymous_variant 0.17
gyrB 6289 c.1050C>T synonymous_variant 0.18
gyrB 6292 c.1053G>C synonymous_variant 0.18
gyrA 6307 c.-995T>G upstream_gene_variant 0.23
gyrA 6319 c.-983G>C upstream_gene_variant 0.26
gyrA 6362 c.-940T>C upstream_gene_variant 0.21
gyrA 6376 c.-926G>A upstream_gene_variant 0.2
gyrA 6379 c.-923C>G upstream_gene_variant 0.2
gyrA 6382 c.-920A>G upstream_gene_variant 0.21
gyrA 6388 c.-914T>C upstream_gene_variant 0.21
gyrA 6403 c.-899T>C upstream_gene_variant 0.18
gyrA 6613 c.-689A>G upstream_gene_variant 0.17
gyrA 6616 c.-686A>G upstream_gene_variant 0.16
gyrA 6622 c.-680C>T upstream_gene_variant 0.16
gyrA 6634 c.-668T>C upstream_gene_variant 0.19
gyrA 6637 c.-665T>G upstream_gene_variant 0.18
gyrA 6640 c.-662A>G upstream_gene_variant 0.18
gyrA 6643 c.-659A>G upstream_gene_variant 0.17
gyrA 6649 c.-653T>C upstream_gene_variant 0.18
gyrA 6655 c.-647T>C upstream_gene_variant 0.18
gyrA 6670 c.-632G>C upstream_gene_variant 0.21
gyrA 6673 c.-629A>C upstream_gene_variant 0.23
gyrA 6676 c.-626T>G upstream_gene_variant 0.23
gyrA 6700 c.-602T>C upstream_gene_variant 0.21
gyrA 6703 c.-599G>C upstream_gene_variant 0.22
gyrA 6709 c.-593A>G upstream_gene_variant 0.24
gyrA 6712 c.-590G>C upstream_gene_variant 0.21
gyrA 6751 c.-551G>C upstream_gene_variant 0.21
gyrA 6760 c.-542G>C upstream_gene_variant 0.23
gyrA 6763 c.-539G>C upstream_gene_variant 0.2
gyrA 6775 c.-527G>C upstream_gene_variant 0.16
gyrA 6793 c.-509T>C upstream_gene_variant 0.18
gyrB 6797 p.Gly520Thr missense_variant 0.18
gyrA 6811 c.-491C>T upstream_gene_variant 0.17
gyrA 6841 c.-461T>C upstream_gene_variant 0.25
gyrA 6844 c.-458T>C upstream_gene_variant 0.23
gyrA 6901 c.-401G>C upstream_gene_variant 0.15
gyrA 6904 c.-398C>G upstream_gene_variant 0.17
gyrA 6910 c.-392G>A upstream_gene_variant 0.17
gyrA 6967 c.-335T>C upstream_gene_variant 0.27
gyrA 6973 c.-329G>C upstream_gene_variant 0.33
gyrA 6982 c.-320A>C upstream_gene_variant 0.29
gyrA 7006 c.-296T>C upstream_gene_variant 0.27
gyrA 7007 c.-295C>T upstream_gene_variant 0.26
gyrA 7010 c.-292C>T upstream_gene_variant 0.25
gyrA 7015 c.-287G>A upstream_gene_variant 0.25
gyrA 7018 c.-284G>A upstream_gene_variant 0.29
gyrB 7023 p.Leu595Gln missense_variant 0.27
gyrA 7033 c.-269G>C upstream_gene_variant 0.29
gyrB 7051 p.Glu604Asp missense_variant 0.21
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7391 c.90C>T synonymous_variant 0.21
gyrA 7394 c.93T>C synonymous_variant 0.21
gyrA 7427 c.126G>C synonymous_variant 0.24
gyrA 7442 c.141G>C synonymous_variant 0.24
gyrA 7451 c.150C>G synonymous_variant 0.28
gyrA 7457 c.156T>C synonymous_variant 0.3
gyrA 7475 c.174A>G synonymous_variant 0.23
gyrA 7477 p.Met59Thr missense_variant 0.78
gyrA 7480 p.Phe60Tyr missense_variant 0.21
gyrA 7484 c.183T>C synonymous_variant 0.22
gyrA 7490 c.189C>G synonymous_variant 0.24
gyrA 7523 c.222C>G synonymous_variant 0.25
gyrA 7532 c.231T>G synonymous_variant 0.24
gyrA 7541 c.240C>G synonymous_variant 0.24
gyrA 7547 c.246C>T synonymous_variant 0.24
gyrA 7571 c.270G>C synonymous_variant 0.23
gyrA 7585 p.Ser95Thr missense_variant 0.23
gyrA 7595 c.294C>G synonymous_variant 0.17
gyrA 7601 c.300C>G synonymous_variant 0.16
gyrA 7607 c.306C>T synonymous_variant 0.15
gyrA 7622 c.321C>T synonymous_variant 0.16
gyrA 7625 c.324G>C synonymous_variant 0.17
gyrA 7631 c.330G>C synonymous_variant 0.17
gyrA 7637 c.336C>G synonymous_variant 0.18
gyrA 7658 c.357A>C synonymous_variant 0.18
gyrA 7664 c.363T>C synonymous_variant 0.16
gyrA 7670 c.369A>G synonymous_variant 0.16
gyrA 7679 c.378G>C synonymous_variant 0.17
gyrA 7763 c.462T>C synonymous_variant 0.15
gyrA 7775 c.474C>A synonymous_variant 0.17
gyrA 7781 c.480G>C synonymous_variant 0.16
gyrA 7784 c.483A>G synonymous_variant 0.16
gyrA 7790 c.489G>C synonymous_variant 0.18
gyrA 7793 c.492G>C synonymous_variant 0.19
gyrA 7796 c.495G>C synonymous_variant 0.21
gyrA 7799 c.498A>G synonymous_variant 0.21
gyrA 7814 c.513C>G synonymous_variant 0.23
gyrA 7823 c.522G>C synonymous_variant 0.26
gyrA 7832 c.531G>T synonymous_variant 0.22
gyrA 7835 c.534A>C synonymous_variant 0.19
gyrA 8121 c.820T>C synonymous_variant 0.17
gyrA 8129 c.828T>C synonymous_variant 0.16
gyrA 8135 c.834C>G synonymous_variant 0.19
gyrA 8156 c.855T>C synonymous_variant 0.32
gyrA 8168 c.867A>G synonymous_variant 0.31
gyrA 8177 c.876A>C synonymous_variant 0.3
gyrA 8198 c.897T>C synonymous_variant 0.22
gyrA 8207 c.906T>C synonymous_variant 0.19
gyrA 8219 c.918T>C synonymous_variant 0.2
gyrA 8225 c.924T>C synonymous_variant 0.2
gyrA 8234 c.933T>C synonymous_variant 0.2
gyrA 8237 c.936A>G synonymous_variant 0.21
gyrA 8247 p.Ile316Val missense_variant 0.21
gyrA 8264 c.963T>C synonymous_variant 0.16
gyrA 8267 c.966G>C synonymous_variant 0.16
gyrA 8270 c.969G>C synonymous_variant 0.17
gyrA 8276 c.975G>A synonymous_variant 0.19
gyrA 8283 p.Ile328Leu missense_variant 0.21
gyrA 8288 c.987T>C synonymous_variant 0.19
gyrA 8294 c.993T>C synonymous_variant 0.26
gyrA 8324 c.1023T>C synonymous_variant 0.27
gyrA 8330 c.1029C>G synonymous_variant 0.3
gyrA 8339 c.1038A>G synonymous_variant 0.27
gyrA 8340 p.Ala347Ser missense_variant 0.25
gyrA 8372 c.1071G>C synonymous_variant 0.29
gyrA 8375 c.1074G>C synonymous_variant 0.31
gyrA 8382 p.Leu361Met missense_variant 0.35
gyrA 8387 c.1086C>T synonymous_variant 0.33
gyrA 8391 p.Tyr364His missense_variant 0.27
gyrA 8399 c.1098T>G synonymous_variant 0.26
gyrA 8401 p.Asp367Ala missense_variant 0.26
gyrA 8405 c.1104C>T synonymous_variant 0.25
gyrA 8420 c.1119T>C synonymous_variant 0.17
gyrA 8504 c.1203G>C synonymous_variant 0.16
gyrA 8576 c.1275C>G synonymous_variant 0.15
gyrA 8579 c.1278C>T synonymous_variant 0.18
gyrA 8588 c.1287G>A synonymous_variant 0.15
gyrA 8619 c.1318_1320delTTGinsCTA synonymous_variant 0.24
gyrA 8624 c.1323G>C synonymous_variant 0.24
gyrA 8636 c.1335A>C synonymous_variant 0.25
gyrA 8642 c.1341A>G synonymous_variant 0.24
gyrA 8672 c.1371A>G synonymous_variant 0.21
gyrA 8678 c.1377G>A synonymous_variant 0.17
gyrA 8693 c.1392T>C synonymous_variant 0.17
gyrA 8699 c.1398A>G synonymous_variant 0.18
gyrA 8828 c.1527T>C synonymous_variant 0.15
gyrA 8837 c.1536C>T synonymous_variant 0.15
gyrA 8852 c.1551T>C synonymous_variant 0.16
gyrA 8858 c.1557T>C synonymous_variant 0.19
gyrA 8867 c.1566A>G synonymous_variant 0.18
gyrA 8870 c.1569G>C synonymous_variant 0.19
gyrA 8873 c.1572A>C synonymous_variant 0.18
gyrA 8891 c.1590G>A synonymous_variant 0.21
gyrA 8897 c.1596T>C synonymous_variant 0.22
gyrA 8903 c.1602T>C synonymous_variant 0.22
gyrA 8933 c.1632G>C synonymous_variant 0.24
gyrA 8939 c.1638T>C synonymous_variant 0.22
gyrA 8942 c.1641G>C synonymous_variant 0.22
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.2
gyrA 8996 c.1695T>C synonymous_variant 0.16
gyrA 8998 p.Leu566Trp missense_variant 0.16
gyrA 9119 c.1818A>G synonymous_variant 0.17
gyrA 9122 c.1821C>G synonymous_variant 0.17
gyrA 9143 c.1842T>C synonymous_variant 0.2
gyrA 9152 c.1851C>T synonymous_variant 0.15
gyrA 9158 c.1857C>T synonymous_variant 0.15
gyrA 9191 c.1890G>C synonymous_variant 0.15
gyrA 9204 p.Ser635Thr missense_variant 0.13
gyrA 9323 c.2022C>G synonymous_variant 0.17
gyrA 9335 c.2034G>C synonymous_variant 0.16
fgd1 490803 c.21T>A synonymous_variant 0.13
fgd1 490827 c.45C>T synonymous_variant 0.16
fgd1 490848 c.66A>G synonymous_variant 0.17
fgd1 490851 c.69A>T synonymous_variant 0.17
fgd1 490868 p.Ala29Gly missense_variant 0.19
fgd1 491173 c.391C>A synonymous_variant 0.14
fgd1 491241 p.Asp153Glu missense_variant 0.16
fgd1 491244 c.462T>C synonymous_variant 0.16
mshA 575674 c.327G>C synonymous_variant 0.17
mshA 575812 c.465C>T synonymous_variant 0.26
mshA 575821 c.474G>C synonymous_variant 0.23
mshA 575824 c.477T>G synonymous_variant 0.24
mshA 575830 c.483C>G synonymous_variant 0.26
mshA 575833 c.486C>G synonymous_variant 0.26
mshA 575845 c.498C>T synonymous_variant 0.26
mshA 575884 c.537G>C synonymous_variant 0.23
mshA 575887 c.540G>C synonymous_variant 0.23
mshA 575893 c.546C>G synonymous_variant 0.21
mshA 575896 c.549G>C synonymous_variant 0.21
ccsA 620362 p.Ala158Thr missense_variant 0.15
ccsA 620373 c.483C>G synonymous_variant 0.16
ccsA 620376 c.486G>C synonymous_variant 0.19
ccsA 620389 c.499C>T synonymous_variant 0.16
ccsA 620412 c.522T>C synonymous_variant 0.19
ccsA 620415 c.525T>C synonymous_variant 0.19
rpoB 760181 c.375T>C synonymous_variant 0.17
rpoB 760184 c.378A>G synonymous_variant 0.17
rpoB 760328 c.522G>C synonymous_variant 0.16
rpoB 760331 c.525G>C synonymous_variant 0.17
rpoB 760340 c.534G>T synonymous_variant 0.17
rpoB 760406 c.600G>C synonymous_variant 0.19
rpoB 760412 c.606C>G synonymous_variant 0.16
rpoB 760424 c.618C>G synonymous_variant 0.17
rpoB 760522 p.Ser239Asn missense_variant 0.22
rpoB 760532 c.726T>C synonymous_variant 0.21
rpoB 760533 p.Val243Thr missense_variant 0.21
rpoB 760541 c.735G>C synonymous_variant 0.25
rpoB 760547 c.741G>C synonymous_variant 0.25
rpoB 760563 p.Arg253Met missense_variant 0.31
rpoB 760591 p.Val262Ala missense_variant 0.3
rpoB 760595 c.789C>T synonymous_variant 0.28
rpoB 760598 c.792C>A synonymous_variant 0.25
rpoB 760611 c.805T>C synonymous_variant 0.28
rpoB 760646 c.840C>G synonymous_variant 0.24
rpoB 760655 c.849A>G synonymous_variant 0.21
rpoB 760661 c.855A>C synonymous_variant 0.2
rpoB 760670 c.864G>C synonymous_variant 0.21
rpoB 760674 c.868T>C synonymous_variant 0.19
rpoB 760679 c.873A>G synonymous_variant 0.2
rpoB 760683 c.877T>C synonymous_variant 0.18
rpoB 760886 c.1080A>G synonymous_variant 0.24
rpoB 760925 c.1119T>C synonymous_variant 0.23
rpoB 760928 c.1122G>C synonymous_variant 0.23
rpoB 760931 c.1125C>G synonymous_variant 0.25
rpoB 760934 c.1128C>T synonymous_variant 0.25
rpoB 760946 c.1140A>G synonymous_variant 0.21
rpoB 760982 c.1176G>C synonymous_variant 0.22
rpoB 760985 c.1179G>C synonymous_variant 0.17
rpoB 760991 c.1185G>C synonymous_variant 0.19
rpoB 761006 c.1200C>G synonymous_variant 0.21
rpoB 761015 c.1209G>C synonymous_variant 0.23
rpoB 761021 c.1215G>C synonymous_variant 0.24
rpoB 761027 c.1221A>G synonymous_variant 0.22
rpoB 761036 c.1230G>C synonymous_variant 0.2
rpoB 761037 c.1231T>C synonymous_variant 0.21
rpoB 761057 c.1251G>C synonymous_variant 0.18
rpoB 761102 c.1296A>G synonymous_variant 0.23
rpoB 761129 c.1323G>C synonymous_variant 0.21
rpoB 761132 c.1326G>T synonymous_variant 0.2
rpoB 761133 c.1327T>C synonymous_variant 0.2
rpoB 761150 c.1344A>C synonymous_variant 0.22
rpoB 761153 c.1347G>C synonymous_variant 0.25
rpoB 761165 c.1359G>C synonymous_variant 0.25
rpoB 761180 c.1374A>C synonymous_variant 0.23
rpoB 761189 c.1383T>C synonymous_variant 0.22
rpoB 761195 c.1389G>C synonymous_variant 0.21
rpoB 761207 c.1401C>T synonymous_variant 0.23
rpoB 761213 c.1407G>C synonymous_variant 0.27
rpoB 761219 c.1413G>C synonymous_variant 0.29
rpoB 761249 c.1443A>G synonymous_variant 0.29
rpoB 761255 c.1449T>G synonymous_variant 0.24
rpoB 761261 c.1455G>T synonymous_variant 0.25
rpoB 761306 c.1500C>G synonymous_variant 0.22
rpoB 761312 c.1506G>C synonymous_variant 0.19
rpoB 761354 c.1548C>T synonymous_variant 0.16
rpoB 761510 c.1704T>C synonymous_variant 0.19
rpoB 761537 c.1731C>G synonymous_variant 0.3
rpoB 761570 c.1764T>C synonymous_variant 0.3
rpoB 761573 c.1767C>G synonymous_variant 0.28
rpoB 761579 c.1773G>C synonymous_variant 0.27
rpoB 761588 c.1782C>T synonymous_variant 0.26
rpoB 761606 c.1800C>G synonymous_variant 0.27
rpoB 761612 c.1806G>C synonymous_variant 0.29
rpoB 761615 c.1809A>C synonymous_variant 0.3
rpoB 761636 c.1830G>T synonymous_variant 0.24
rpoB 761645 c.1839C>G synonymous_variant 0.2
rpoB 761648 c.1842T>C synonymous_variant 0.19
rpoB 761657 c.1851C>G synonymous_variant 0.21
rpoB 761675 c.1869G>C synonymous_variant 0.23
rpoB 761873 c.2067A>C synonymous_variant 0.19
rpoB 762008 c.2202C>T synonymous_variant 0.15
rpoB 762014 c.2208C>T synonymous_variant 0.15
rpoB 762062 c.2256T>C synonymous_variant 0.16
rpoB 762065 c.2259T>C synonymous_variant 0.16
rpoB 762266 c.2460T>C synonymous_variant 0.15
rpoB 762284 c.2478G>C synonymous_variant 0.2
rpoB 762293 c.2487T>C synonymous_variant 0.31
rpoB 762314 c.2508C>T synonymous_variant 0.28
rpoB 762317 c.2511A>G synonymous_variant 0.28
rpoB 762329 c.2523G>C synonymous_variant 0.26
rpoB 762338 c.2532T>C synonymous_variant 0.26
rpoB 762347 c.2541T>C synonymous_variant 0.24
rpoB 762362 p.Glu852Asp missense_variant 0.23
rpoB 762369 c.2563T>C synonymous_variant 0.2
rpoC 762398 c.-972T>C upstream_gene_variant 0.21
rpoC 762401 c.-969G>C upstream_gene_variant 0.21
rpoC 762404 c.-966T>C upstream_gene_variant 0.22
rpoC 762410 c.-960T>C upstream_gene_variant 0.23
rpoC 762416 c.-954A>G upstream_gene_variant 0.23
rpoC 762419 c.-951C>G upstream_gene_variant 0.22
rpoC 762434 c.-936T>C upstream_gene_variant 0.19
rpoC 762449 c.-921C>A upstream_gene_variant 0.25
rpoC 762467 c.-903C>T upstream_gene_variant 0.22
rpoC 762509 c.-861T>G upstream_gene_variant 0.19
rpoB 762510 p.Ala902Pro missense_variant 0.19
rpoC 762521 c.-849C>T upstream_gene_variant 0.19
rpoC 762533 c.-837T>C upstream_gene_variant 0.21
rpoC 762536 c.-834T>C upstream_gene_variant 0.19
rpoC 762537 c.-833T>C upstream_gene_variant 0.2
rpoC 762551 c.-819C>G upstream_gene_variant 0.16
rpoC 762857 c.-513C>G upstream_gene_variant 0.16
rpoC 762860 c.-510G>C upstream_gene_variant 0.16
rpoC 762863 c.-507T>C upstream_gene_variant 0.15
rpoC 762929 c.-441G>C upstream_gene_variant 0.33
rpoC 762989 c.-381G>C upstream_gene_variant 0.27
rpoC 762995 c.-375G>T upstream_gene_variant 0.3
rpoC 763013 c.-357C>G upstream_gene_variant 0.29
rpoC 763028 c.-342T>C upstream_gene_variant 0.2
rpoC 763031 c.-339T>G upstream_gene_variant 0.2
rpoC 763034 c.-336C>G upstream_gene_variant 0.19
rpoC 763040 c.-330C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.29
rpoC 763085 c.-285C>G upstream_gene_variant 0.26
rpoC 763115 c.-255T>C upstream_gene_variant 0.31
rpoC 763136 c.-234C>T upstream_gene_variant 0.32
rpoC 763148 c.-222G>C upstream_gene_variant 0.28
rpoC 763158 c.-212C>T upstream_gene_variant 0.22
rpoC 763166 c.-204A>G upstream_gene_variant 0.21
rpoC 763190 c.-180C>T upstream_gene_variant 0.22
rpoC 763202 c.-168A>G upstream_gene_variant 0.22
rpoC 763205 c.-165G>C upstream_gene_variant 0.17
rpoC 763206 c.-164_-162delAGTinsTCG upstream_gene_variant 0.19
rpoC 763214 c.-156T>C upstream_gene_variant 0.23
rpoC 763226 c.-144A>G upstream_gene_variant 0.23
rpoC 763227 c.-143C>T upstream_gene_variant 0.23
rpoC 763238 c.-132T>C upstream_gene_variant 0.21
rpoC 763253 c.-117G>C upstream_gene_variant 0.17
rpoC 763402 c.33C>G synonymous_variant 0.16
rpoC 763411 c.42T>G synonymous_variant 0.24
rpoC 763414 c.45T>C synonymous_variant 0.24
rpoC 763441 c.72C>T synonymous_variant 0.31
rpoC 763444 c.75T>C synonymous_variant 0.31
rpoC 763456 c.87A>G synonymous_variant 0.36
rpoC 763486 c.117T>G synonymous_variant 0.35
rpoC 763528 c.159G>A synonymous_variant 0.36
rpoC 763546 c.177A>G synonymous_variant 0.34
rpoC 763570 c.201G>C synonymous_variant 0.3
rpoC 763573 c.204G>C synonymous_variant 0.3
rpoC 763594 c.225C>T synonymous_variant 0.24
rpoC 763603 c.234C>T synonymous_variant 0.19
rpoC 763660 c.291T>G synonymous_variant 0.21
rpoC 763675 c.306C>G synonymous_variant 0.22
rpoC 763702 c.333C>G synonymous_variant 0.17
rpoC 763717 c.348T>C synonymous_variant 0.18
rpoC 763723 c.354G>C synonymous_variant 0.17
rpoC 763732 c.363C>G synonymous_variant 0.2
rpoC 763741 c.372C>T synonymous_variant 0.18
rpoC 763744 c.375G>C synonymous_variant 0.2
rpoC 763774 c.405G>C synonymous_variant 0.16
rpoC 763807 c.438T>C synonymous_variant 0.18
rpoC 763816 c.447C>G synonymous_variant 0.2
rpoC 763825 c.456G>A synonymous_variant 0.21
rpoC 763835 p.Ala156Met missense_variant 0.21
rpoC 763853 p.Val162Ile missense_variant 0.21
rpoC 763858 c.489A>G synonymous_variant 0.21
rpoC 763987 c.618C>T synonymous_variant 0.16
rpoC 763996 c.627T>C synonymous_variant 0.18
rpoC 764002 c.633C>G synonymous_variant 0.19
rpoC 764005 c.636G>C synonymous_variant 0.21
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.19
rpoC 764032 p.Asp221Glu missense_variant 0.25
rpoC 764040 p.Ser224Thr missense_variant 0.24
rpoC 764044 c.675T>C synonymous_variant 0.27
rpoC 764059 c.690G>T synonymous_variant 0.14
rpoC 764083 c.714A>G synonymous_variant 0.17
rpoC 764098 c.729A>G synonymous_variant 0.17
rpoC 764101 c.732C>G synonymous_variant 0.17
rpoC 764102 p.Val245Ile missense_variant 0.17
rpoC 764112 p.Tyr248Phe missense_variant 0.14
rpoC 764131 c.762T>C synonymous_variant 0.22
rpoC 764140 c.771C>T synonymous_variant 0.18
rpoC 764188 c.819A>G synonymous_variant 0.21
rpoC 764195 p.Ser276Ile missense_variant 0.21
rpoC 764203 c.834G>C synonymous_variant 0.22
rpoC 764206 c.837T>C synonymous_variant 0.24
rpoC 764215 c.846A>G synonymous_variant 0.3
rpoC 764236 c.867G>A synonymous_variant 0.33
rpoC 764248 c.879C>G synonymous_variant 0.39
rpoC 764257 c.888G>C synonymous_variant 0.38
rpoC 764266 c.897T>C synonymous_variant 0.41
rpoC 764269 c.900G>C synonymous_variant 0.4
rpoC 764272 c.903G>C synonymous_variant 0.36
rpoC 764278 c.909A>G synonymous_variant 0.34
rpoC 764338 c.969G>A synonymous_variant 0.16
rpoC 764554 c.1185C>T synonymous_variant 0.16
rpoC 764566 c.1197C>G synonymous_variant 0.16
rpoC 764575 c.1206T>G synonymous_variant 0.15
rpoC 764581 c.1212T>C synonymous_variant 0.15
rpoC 764593 c.1224C>T synonymous_variant 0.3
rpoC 764611 c.1242G>T synonymous_variant 0.32
rpoC 764650 c.1281G>C synonymous_variant 0.3
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.31
rpoC 764752 c.1383G>C synonymous_variant 0.31
rpoC 764764 c.1395T>C synonymous_variant 0.29
rpoC 764809 c.1440C>T synonymous_variant 0.26
rpoC 764815 c.1446A>G synonymous_variant 0.25
rpoC 764827 c.1458G>C synonymous_variant 0.25
rpoC 764858 c.1489T>C synonymous_variant 0.24
rpoC 764872 c.1503A>G synonymous_variant 0.28
rpoC 764888 c.1519T>C synonymous_variant 0.3
rpoC 764911 c.1542A>G synonymous_variant 0.3
rpoC 764932 c.1563C>A synonymous_variant 0.27
rpoC 764935 c.1566T>C synonymous_variant 0.32
rpoC 764948 c.1579T>C synonymous_variant 0.29
rpoC 764968 c.1599T>C synonymous_variant 0.19
rpoC 765292 c.1923G>C synonymous_variant 0.13
rpoC 765349 c.1980T>C synonymous_variant 0.15
rpoC 765352 c.1983G>C synonymous_variant 0.18
rpoC 765421 c.2052C>G synonymous_variant 0.18
rpoC 765499 c.2130C>G synonymous_variant 0.16
rpoC 765541 c.2172C>G synonymous_variant 0.19
rpoC 765553 c.2184C>T synonymous_variant 0.17
rpoC 765556 c.2187G>C synonymous_variant 0.17
rpoC 765559 c.2190G>C synonymous_variant 0.18
rpoC 765580 c.2211G>C synonymous_variant 0.23
rpoC 765613 p.His748Gln missense_variant 0.21
rpoC 765625 c.2256C>G synonymous_variant 0.21
rpoC 765631 p.Asp754Glu missense_variant 0.2
rpoC 765700 c.2331T>C synonymous_variant 0.25
rpoC 765734 c.2365T>C synonymous_variant 0.26
rpoC 765739 c.2370G>T synonymous_variant 0.22
rpoC 765751 c.2382C>G synonymous_variant 0.24
rpoC 765753 p.Asp795Ala missense_variant 0.24
rpoC 765772 c.2403C>G synonymous_variant 0.26
rpoC 765784 c.2415C>G synonymous_variant 0.28
rpoC 765787 c.2418C>T synonymous_variant 0.23
rpoC 765793 c.2424C>G synonymous_variant 0.23
rpoC 765796 c.2427C>T synonymous_variant 0.23
rpoC 765811 c.2442T>C synonymous_variant 0.24
rpoC 765814 c.2445A>G synonymous_variant 0.24
rpoC 765826 c.2457T>C synonymous_variant 0.3
rpoC 765835 c.2466C>T synonymous_variant 0.35
rpoC 765850 c.2481G>C synonymous_variant 0.35
rpoC 765883 c.2514C>G synonymous_variant 0.25
rpoC 765886 c.2517C>G synonymous_variant 0.25
rpoC 765892 c.2523T>C synonymous_variant 0.22
rpoC 765937 c.2568T>C synonymous_variant 0.19
rpoC 765967 c.2598C>T synonymous_variant 0.22
rpoC 765982 c.2613C>G synonymous_variant 0.23
rpoC 765994 c.2625A>T synonymous_variant 0.22
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.18
rpoC 766027 c.2658G>C synonymous_variant 0.17
rpoC 766043 p.Gln892Glu missense_variant 0.17
rpoC 766082 p.Ala905Gln missense_variant 0.21
rpoC 766096 c.2727G>C synonymous_variant 0.23
rpoC 766129 c.2760C>G synonymous_variant 0.16
rpoC 766135 c.2766G>A synonymous_variant 0.14
rpoC 766303 c.2934C>T synonymous_variant 0.22
rpoC 766312 c.2943T>G synonymous_variant 0.19
rpoC 766327 c.2958C>A synonymous_variant 0.17
rpoC 766348 c.2979A>G synonymous_variant 0.17
rpoC 766357 c.2988C>T synonymous_variant 0.17
rpoC 766363 c.2994G>C synonymous_variant 0.17
rpoC 766366 c.2997C>G synonymous_variant 0.17
rpoC 766381 c.3012C>T synonymous_variant 0.17
rpoC 766384 c.3015A>G synonymous_variant 0.18
rpoC 766426 c.3057C>T synonymous_variant 0.16
rpoC 766447 c.3078T>C synonymous_variant 0.22
rpoC 766462 c.3093G>C synonymous_variant 0.22
rpoC 766483 c.3114G>C synonymous_variant 0.15
rpoC 766484 p.Val1039Ile missense_variant 0.15
rpoC 766492 c.3123T>C synonymous_variant 0.17
rpoC 766522 c.3153C>G synonymous_variant 0.23
rpoC 766528 c.3159T>C synonymous_variant 0.25
rpoC 766531 c.3162G>C synonymous_variant 0.27
rpoC 766540 p.Asp1057Glu missense_variant 0.22
rpoC 766549 c.3180G>C synonymous_variant 0.19
rpoC 766573 c.3204T>C synonymous_variant 0.17
rpoC 766583 p.Gly1072Ser missense_variant 0.15
rpoC 766726 c.3357T>C synonymous_variant 0.14
rpoC 766747 c.3378C>T synonymous_variant 0.15
rpoC 766774 c.3405T>C synonymous_variant 0.19
rpoC 766804 c.3435A>G synonymous_variant 0.16
rpoC 766861 c.3492G>C synonymous_variant 0.15
rpoC 766885 c.3516G>A synonymous_variant 0.19
rpoC 766900 c.3531T>C synonymous_variant 0.18
rpoC 766933 c.3564A>G synonymous_variant 0.17
rpoC 766963 c.3594T>C synonymous_variant 0.16
rpoC 766972 c.3603G>C synonymous_variant 0.19
rpoC 766987 c.3618G>C synonymous_variant 0.16
rpoC 766996 c.3627C>T synonymous_variant 0.17
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 0.21
rpoC 767059 c.3690T>G synonymous_variant 0.19
rpoC 767062 c.3693C>A synonymous_variant 0.21
rpoC 767098 c.3729T>C synonymous_variant 0.22
rpoC 767119 c.3750A>G synonymous_variant 0.17
rpoC 767158 c.3789T>C synonymous_variant 0.21
rpoC 767180 p.Ala1271Gln missense_variant 0.19
rpoC 767191 c.3822C>G synonymous_variant 0.16
rpoC 767206 c.3837C>G synonymous_variant 0.16
rpoC 767212 c.3843G>C synonymous_variant 0.16
rpoC 767221 c.3852C>G synonymous_variant 0.18
rpoC 767230 c.3861G>C synonymous_variant 0.2
rpoC 767233 c.3864T>C synonymous_variant 0.21
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 777173 c.1308C>G synonymous_variant 0.14
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781595 c.36T>C synonymous_variant 0.15
rpsL 781608 p.Ser17Ala missense_variant 0.16
rpsL 781628 c.69T>C synonymous_variant 0.24
rpsL 781631 c.72G>C synonymous_variant 0.25
rpsL 781649 c.90T>C synonymous_variant 0.24
rpsL 781655 c.96T>C synonymous_variant 0.24
rpsL 781700 c.141G>C synonymous_variant 0.21
rpsL 781703 c.144G>T synonymous_variant 0.2
rpsL 781715 c.156T>C synonymous_variant 0.18
rpsL 781728 c.169T>C synonymous_variant 0.2
rpsL 781736 c.177T>C synonymous_variant 0.19
rpsL 781742 c.183C>T synonymous_variant 0.21
rpsL 781748 c.189C>G synonymous_variant 0.23
rpsL 781754 c.195G>C synonymous_variant 0.22
rpsL 781760 c.201T>C synonymous_variant 0.25
rpsL 781772 c.213C>A synonymous_variant 0.28
rpsL 781808 c.249C>T synonymous_variant 0.21
rpsL 781811 c.252C>T synonymous_variant 0.22
rpsL 781832 c.273T>C synonymous_variant 0.21
rpsL 781838 c.279G>C synonymous_variant 0.21
rpsL 781841 c.282C>G synonymous_variant 0.19
rpsL 781865 c.306G>C synonymous_variant 0.17
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.16
rpsL 781877 c.318T>C synonymous_variant 0.19
rpsL 781892 c.333A>G synonymous_variant 0.21
rpsL 781898 c.339A>T synonymous_variant 0.2
rpsL 781916 c.357T>C synonymous_variant 0.18
rpsL 781929 p.Gly124Ser missense_variant 0.16
rplC 800612 c.-197A>G upstream_gene_variant 0.26
rplC 800618 c.-191T>C upstream_gene_variant 0.26
rplC 800627 c.-182C>T upstream_gene_variant 0.27
rplC 800648 c.-161A>T upstream_gene_variant 0.33
rplC 800654 c.-155T>C upstream_gene_variant 0.3
rplC 800693 c.-116A>G upstream_gene_variant 0.31
rplC 800703 c.-106T>C upstream_gene_variant 0.28
rplC 800715 c.-94A>C upstream_gene_variant 0.27
rplC 800720 c.-89T>C upstream_gene_variant 0.27
rplC 800723 c.-86C>G upstream_gene_variant 0.25
rplC 800747 c.-62C>G upstream_gene_variant 0.22
rplC 800771 c.-38C>T upstream_gene_variant 0.2
rplC 800817 c.9A>T synonymous_variant 0.15
rplC 801195 c.387G>C synonymous_variant 0.19
rplC 801207 c.399C>T synonymous_variant 0.28
rplC 801246 c.438C>T synonymous_variant 0.28
rplC 801249 c.441T>C synonymous_variant 0.28
rplC 801255 c.447C>T synonymous_variant 0.26
rplC 801264 c.456C>T synonymous_variant 0.21
rplC 801267 c.459A>T synonymous_variant 0.21
rplC 801270 c.462T>C synonymous_variant 0.18
rplC 801276 c.468G>C synonymous_variant 0.18
rplC 801279 c.471G>A synonymous_variant 0.18
rplC 801282 c.474G>C synonymous_variant 0.18
rplC 801285 c.477G>C synonymous_variant 0.18
rplC 801367 p.Ala187Thr missense_variant 0.16
rplC 801442 p.Ile212Val missense_variant 0.15
fbiC 1303920 c.990C>T synonymous_variant 0.15
fbiC 1304535 c.1605G>A synonymous_variant 0.17
fbiC 1304544 c.1614T>C synonymous_variant 0.17
fbiC 1304545 p.Val539Thr missense_variant 0.16
fbiC 1304553 c.1623C>T synonymous_variant 0.18
fbiC 1304559 p.Glu543Asp missense_variant 0.18
fbiC 1304565 c.1635C>G synonymous_variant 0.16
fbiC 1304568 c.1638T>C synonymous_variant 0.17
fbiC 1304580 c.1650T>C synonymous_variant 0.15
fbiC 1304784 c.1854T>C synonymous_variant 0.16
fbiC 1304787 c.1857T>G synonymous_variant 0.16
fbiC 1304808 c.1878C>G synonymous_variant 0.18
fbiC 1304811 c.1881C>G synonymous_variant 0.22
fbiC 1304817 c.1887T>C synonymous_variant 0.24
fbiC 1304829 c.1899T>C synonymous_variant 0.39
fbiC 1304832 c.1902C>T synonymous_variant 0.41
fbiC 1304856 c.1926C>G synonymous_variant 0.52
fbiC 1304869 c.1939C>T synonymous_variant 0.3
fbiC 1304875 p.Ile649Val missense_variant 0.29
fbiC 1304883 p.Glu651Asp missense_variant 0.27
fbiC 1304891 p.Ile654Thr missense_variant 0.23
fbiC 1304893 p.Gly655Ser missense_variant 0.23
fbiC 1304907 c.1977C>G synonymous_variant 0.18
fbiC 1304910 c.1980G>C synonymous_variant 0.18
fbiC 1304916 c.1986T>C synonymous_variant 0.22
fbiC 1304928 c.1998T>C synonymous_variant 0.21
fbiC 1304937 c.2007G>C synonymous_variant 0.18
fbiC 1304958 c.2028T>G synonymous_variant 0.18
fbiC 1304983 c.2053C>T synonymous_variant 0.16
fbiC 1304995 p.Leu689Met missense_variant 0.14
fbiC 1305372 c.2442G>A synonymous_variant 0.17
fbiC 1305384 c.2454G>C synonymous_variant 0.16
fbiC 1305396 c.2466C>G synonymous_variant 0.17
fbiC 1305405 c.2475A>G synonymous_variant 0.18
atpE 1460852 c.-193C>G upstream_gene_variant 0.21
atpE 1460855 c.-190T>C upstream_gene_variant 0.2
atpE 1460858 c.-187C>G upstream_gene_variant 0.2
atpE 1460861 c.-184C>G upstream_gene_variant 0.2
atpE 1460882 c.-163T>C upstream_gene_variant 0.2
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.2
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.2
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.14
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.43
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.71
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.22
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.22
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.38
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.42
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.38
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.73
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.44
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.38
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.52
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.27
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.92
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.29
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 1.0
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 1.0
rrs 1472426 n.581T>G non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.33
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.33
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.33
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.62
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.44
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.48
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.46
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.29
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.41
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.29
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.48
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.19
rrs 1472574 n.729T>A non_coding_transcript_exon_variant 0.15
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.35
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.71
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.36
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.46
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.46
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.28
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.32
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.5
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.67
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.15
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.62
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.46
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.54
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.6
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.64
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.59
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.31
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.56
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.62
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.75
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.67
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.67
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.75
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.26
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.35
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.26
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.68
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.73
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.43
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.58
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.58
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.81
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.9
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.88
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.88
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.89
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.21
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.86
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.62
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.75
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.42
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.73
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.83
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.83
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.25
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.85
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.62
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.2
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.62
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.27
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.24
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.7
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.26
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.44
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.16
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.33
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.31
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.38
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.17
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.2
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.17
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.45
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.25
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.2
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.38
rrl 1473408 n.-250C>T upstream_gene_variant 0.23
rrl 1473417 n.-241C>T upstream_gene_variant 0.23
rrl 1473419 n.-239T>C upstream_gene_variant 0.23
rrl 1473420 n.-238A>G upstream_gene_variant 0.23
rrl 1473421 n.-237G>A upstream_gene_variant 0.23
rrl 1473437 n.-221T>C upstream_gene_variant 0.15
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.33
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.33
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.6
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.4
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.5
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.5
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.5
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474315 n.658A>G non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.67
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.67
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.67
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.67
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.5
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.5
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.5
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.5
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.6
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.6
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.6
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.6
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.67
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.83
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.67
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.57
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.88
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.62
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.33
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.33
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.5
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.6
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.4
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.5
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.6
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.4
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.4
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.6
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.8
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.75
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.75
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.75
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.67
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.5
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 0.5
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.67
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.7
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.54
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.18
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.18
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.64
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.6
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.6
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.62
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.38
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.22
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.67
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.67
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.67
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.67
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.67
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.67
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.67
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.67
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.67
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.67
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.67
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.15
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.62
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.41
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.71
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.74
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.32
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.64
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.33
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.62
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.4
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.5
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.75
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.5
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.4
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.5
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.29
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.2
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.17
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.17
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.73
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.64
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.2
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.18
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.27
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.2
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.55
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.45
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.36
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.33
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.44
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.36
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.36
fabG1 1673941 p.Ala168Ser missense_variant 0.15
inhA 1673955 c.-247G>C upstream_gene_variant 0.16
inhA 1674549 c.348G>C synonymous_variant 0.16
inhA 1674555 c.354G>A synonymous_variant 0.16
inhA 1674561 c.360C>T synonymous_variant 0.22
inhA 1674582 c.381T>C synonymous_variant 0.28
inhA 1674585 c.384T>C synonymous_variant 0.29
inhA 1674589 p.Met130Leu missense_variant 0.32
inhA 1674601 p.Leu134Ala missense_variant 0.24
inhA 1674624 c.423A>C synonymous_variant 0.17
inhA 1674636 c.435C>G synonymous_variant 0.22
inhA 1674660 c.459G>C synonymous_variant 0.28
inhA 1674703 c.502T>C synonymous_variant 0.23
inhA 1674708 c.507G>A synonymous_variant 0.23
inhA 1674718 c.517A>C synonymous_variant 0.21
inhA 1674729 c.528G>C synonymous_variant 0.27
inhA 1674732 c.531C>T synonymous_variant 0.21
inhA 1674738 c.537C>G synonymous_variant 0.18
inhA 1674816 c.615T>G synonymous_variant 0.15
inhA 1674846 p.Ile215Met missense_variant 0.23
inhA 1674864 c.663C>T synonymous_variant 0.2
inhA 1674870 c.669T>C synonymous_variant 0.21
inhA 1674879 c.678T>C synonymous_variant 0.2
inhA 1674904 p.Ala235Pro missense_variant 0.21
inhA 1674909 c.708G>C synonymous_variant 0.21
rpsA 1833589 c.48A>T synonymous_variant 0.17
rpsA 1833595 c.54T>C synonymous_variant 0.21
rpsA 1833661 c.120A>G synonymous_variant 0.17
rpsA 1833667 c.126C>G synonymous_variant 0.17
rpsA 1833721 c.180A>G synonymous_variant 0.19
rpsA 1833724 c.183C>G synonymous_variant 0.21
rpsA 1833727 c.186G>C synonymous_variant 0.2
rpsA 1833742 c.201A>G synonymous_variant 0.2
rpsA 1833745 c.204G>C synonymous_variant 0.21
rpsA 1833748 c.207C>G synonymous_variant 0.2
rpsA 1833787 c.246C>G synonymous_variant 0.28
rpsA 1833790 c.249T>C synonymous_variant 0.27
rpsA 1833802 c.261A>G synonymous_variant 0.29
rpsA 1833811 c.270G>T synonymous_variant 0.36
rpsA 1833838 c.297G>C synonymous_variant 0.38
rpsA 1833841 c.300C>G synonymous_variant 0.38
rpsA 1833847 c.306C>G synonymous_variant 0.41
rpsA 1833856 c.315A>G synonymous_variant 0.44
rpsA 1833874 c.333T>C synonymous_variant 0.34
rpsA 1833886 c.345C>G synonymous_variant 0.32
rpsA 1833928 c.387G>C synonymous_variant 0.23
rpsA 1833940 c.399C>G synonymous_variant 0.22
rpsA 1833971 c.430C>T synonymous_variant 0.31
rpsA 1833979 c.438T>C synonymous_variant 0.28
rpsA 1834000 c.459G>C synonymous_variant 0.3
rpsA 1834021 c.480C>T synonymous_variant 0.29
rpsA 1834030 c.489C>G synonymous_variant 0.26
rpsA 1834231 c.690T>C synonymous_variant 0.15
rpsA 1834234 c.693G>C synonymous_variant 0.15
rpsA 1834249 c.708T>C synonymous_variant 0.18
rpsA 1834261 c.720A>G synonymous_variant 0.2
rpsA 1834262 p.Ser241Thr missense_variant 0.16
rpsA 1834303 c.762T>C synonymous_variant 0.21
rpsA 1834306 c.765T>C synonymous_variant 0.25
rpsA 1834348 c.807T>C synonymous_variant 0.37
rpsA 1834366 c.825A>G synonymous_variant 0.36
rpsA 1834396 c.855G>C synonymous_variant 0.34
rpsA 1834411 c.870T>C synonymous_variant 0.35
rpsA 1834417 c.876G>C synonymous_variant 0.32
rpsA 1834423 c.882G>C synonymous_variant 0.33
rpsA 1834435 c.894G>C synonymous_variant 0.29
rpsA 1834451 c.910T>C synonymous_variant 0.26
rpsA 1834465 c.924T>C synonymous_variant 0.23
rpsA 1834468 c.927A>G synonymous_variant 0.25
rpsA 1834489 c.948T>C synonymous_variant 0.31
rpsA 1834513 c.972C>G synonymous_variant 0.41
rpsA 1834528 c.987T>C synonymous_variant 0.41
rpsA 1834540 c.999G>C synonymous_variant 0.41
rpsA 1834546 c.1005T>C synonymous_variant 0.33
rpsA 1834555 c.1014T>G synonymous_variant 0.35
rpsA 1834609 c.1068T>C synonymous_variant 0.29
rpsA 1834618 c.1077G>C synonymous_variant 0.31
rpsA 1834633 c.1092A>G synonymous_variant 0.32
rpsA 1834639 c.1098T>C synonymous_variant 0.31
rpsA 1834654 p.Glu371Asp missense_variant 0.29
rpsA 1834690 c.1149T>C synonymous_variant 0.2
rpsA 1834753 c.1212T>C synonymous_variant 0.16
rpsA 1834765 p.Glu408Asp missense_variant 0.17
rpsA 1834775 p.Ala412Thr missense_variant 0.2
rpsA 1834780 c.1239A>G synonymous_variant 0.18
rpsA 1834789 c.1248T>C synonymous_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101744 p.Asp433Glu missense_variant 0.16
ndh 2101756 c.1287G>C synonymous_variant 0.16
ndh 2101765 c.1278C>G synonymous_variant 0.18
ndh 2101768 c.1275C>A synonymous_variant 0.17
ndh 2101771 c.1272T>G synonymous_variant 0.16
ndh 2101774 c.1269T>C synonymous_variant 0.16
ndh 2101777 c.1266C>G synonymous_variant 0.17
ndh 2101783 c.1260T>A synonymous_variant 0.15
ndh 2101939 c.1104A>G synonymous_variant 0.16
ndh 2101960 c.1083A>G synonymous_variant 0.18
ndh 2101963 c.1080G>A synonymous_variant 0.18
ndh 2101966 c.1077T>G synonymous_variant 0.18
ndh 2101972 c.1071G>C synonymous_variant 0.18
ndh 2101988 p.Ala352Asp missense_variant 0.17
ndh 2102014 c.1029C>G synonymous_variant 0.17
katG 2155677 c.435C>G synonymous_variant 0.18
katG 2155680 c.432G>C synonymous_variant 0.18
katG 2155716 c.396T>G synonymous_variant 0.18
katG 2155722 c.390G>C synonymous_variant 0.18
katG 2155794 p.Ala106Thr missense_variant 0.16
katG 2155806 c.306T>C synonymous_variant 0.17
PPE35 2168149 p.Pro822Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289997 c.-756G>C upstream_gene_variant 0.16
kasA 2517950 c.-165C>G upstream_gene_variant 0.21
kasA 2518506 p.Ala131Glu missense_variant 0.18
kasA 2518519 c.405G>C synonymous_variant 0.2
kasA 2518528 c.414C>G synonymous_variant 0.19
kasA 2518540 c.426T>C synonymous_variant 0.25
kasA 2518561 c.447T>C synonymous_variant 0.23
kasA 2518567 c.453G>C synonymous_variant 0.24
kasA 2518570 c.456G>C synonymous_variant 0.25
kasA 2518574 p.Ile154Val missense_variant 0.24
kasA 2518579 c.465T>C synonymous_variant 0.24
kasA 2518588 c.474T>C synonymous_variant 0.24
kasA 2518591 c.477G>C synonymous_variant 0.24
kasA 2518609 p.Met165Ile missense_variant 0.27
kasA 2518768 c.654C>T synonymous_variant 0.17
kasA 2518777 c.663C>T synonymous_variant 0.17
kasA 2518783 c.669T>C synonymous_variant 0.19
kasA 2518789 c.675G>C synonymous_variant 0.18
kasA 2518792 c.678C>A synonymous_variant 0.18
kasA 2518795 c.681C>G synonymous_variant 0.18
kasA 2518825 c.711T>C synonymous_variant 0.21
kasA 2519068 c.954C>T synonymous_variant 0.14
kasA 2519072 p.Ala320Thr missense_variant 0.14
kasA 2519107 c.993T>C synonymous_variant 0.18
kasA 2519108 p.Asp332Gln missense_variant 0.17
kasA 2519116 c.1002C>G synonymous_variant 0.21
kasA 2519122 c.1008G>C synonymous_variant 0.21
kasA 2519137 c.1023T>G synonymous_variant 0.21
kasA 2519158 c.1044C>T synonymous_variant 0.2
kasA 2519167 c.1053T>G synonymous_variant 0.17
kasA 2519173 c.1059C>G synonymous_variant 0.18
Rv2752c 3064831 p.Ala454Asn missense_variant 0.19
Rv2752c 3064838 c.1354T>C synonymous_variant 0.21
Rv2752c 3064860 c.1332G>C synonymous_variant 0.18
Rv2752c 3064863 c.1329G>C synonymous_variant 0.19
Rv2752c 3064872 c.1320T>G synonymous_variant 0.18
Rv2752c 3064877 p.Ser439Ala missense_variant 0.18
Rv2752c 3064883 p.Ser437Gly missense_variant 0.18
Rv2752c 3064887 c.1305A>G synonymous_variant 0.19
Rv2752c 3064893 c.1299C>G synonymous_variant 0.19
Rv2752c 3064896 c.1296T>C synonymous_variant 0.19
Rv2752c 3065241 c.951A>G synonymous_variant 0.19
Rv2752c 3065412 c.780G>A synonymous_variant 0.15
Rv2752c 3066339 c.-148G>C upstream_gene_variant 0.16
thyX 3067325 c.621A>G synonymous_variant 0.17
thyX 3067349 c.597G>C synonymous_variant 0.2
thyX 3067355 c.591A>C synonymous_variant 0.21
thyX 3067367 c.579G>C synonymous_variant 0.21
thyX 3067373 c.573C>G synonymous_variant 0.21
thyX 3067376 c.570G>A synonymous_variant 0.22
thyX 3067391 c.555G>C synonymous_variant 0.28
thyX 3067394 c.552G>C synonymous_variant 0.27
thyX 3067439 c.507A>G synonymous_variant 0.33
thyX 3067445 c.501C>G synonymous_variant 0.33
thyX 3067457 c.489C>G synonymous_variant 0.3
thyX 3067465 p.Ile161Val missense_variant 0.25
thyX 3067475 c.471A>G synonymous_variant 0.27
thyX 3067490 c.456C>G synonymous_variant 0.26
thyX 3067493 c.453A>G synonymous_variant 0.27
thyX 3067515 p.Ser144Thr missense_variant 0.29
thyX 3067530 p.Ala139Ser missense_variant 0.16
thyX 3067545 p.Glu134Ala missense_variant 0.16
thyX 3067565 p.Asp127Glu missense_variant 0.16
thyX 3067583 c.363C>G synonymous_variant 0.2
thyX 3067602 p.Arg115Gln missense_variant 0.15
thyX 3067611 p.Lys112Thr missense_variant 0.17
thyX 3067619 c.327A>C synonymous_variant 0.19
thyX 3067631 c.315C>G synonymous_variant 0.19
thyX 3067634 c.312C>G synonymous_variant 0.18
thyX 3067652 c.294T>C synonymous_variant 0.21
thyX 3067661 c.285C>G synonymous_variant 0.21
thyX 3067685 c.261A>C synonymous_variant 0.22
thyX 3067691 p.Ile85Leu missense_variant 0.2
thyX 3067694 c.252G>C synonymous_variant 0.19
thyX 3067718 c.228C>G synonymous_variant 0.19
thyX 3067721 c.225T>C synonymous_variant 0.16
thyX 3067736 c.210C>T synonymous_variant 0.15
thyX 3067781 c.165C>A synonymous_variant 0.14
thyX 3067793 c.153T>C synonymous_variant 0.16
thyX 3067799 c.147G>A synonymous_variant 0.15
thyX 3067850 c.96A>C synonymous_variant 0.18
thyX 3067869 p.Thr26Ser missense_variant 0.16
thyX 3067874 c.72C>G synonymous_variant 0.15
thyA 3073815 c.657G>A synonymous_variant 0.15
thyA 3073824 c.648A>G synonymous_variant 0.14
thyA 3073827 c.645A>G synonymous_variant 0.17
thyA 3073836 c.636C>T synonymous_variant 0.22
thyA 3073839 c.633T>C synonymous_variant 0.27
thyA 3073860 c.612C>G synonymous_variant 0.36
thyA 3073863 c.609T>C synonymous_variant 0.33
thyA 3073866 c.606C>G synonymous_variant 0.33
thyA 3073872 p.Ile200Val missense_variant 0.33
thyA 3073892 c.580T>C synonymous_variant 0.4
thyA 3073898 p.Ala192Ser missense_variant 0.38
thyA 3073917 c.555C>G synonymous_variant 0.36
thyA 3073920 c.552C>G synonymous_variant 0.37
thyA 3073925 c.547T>C synonymous_variant 0.38
thyA 3073929 c.543T>C synonymous_variant 0.37
thyA 3073953 c.519T>C synonymous_variant 0.29
thyA 3073956 c.516G>C synonymous_variant 0.27
thyA 3073959 c.513T>C synonymous_variant 0.26
thyA 3073977 c.495A>G synonymous_variant 0.26
thyA 3073989 c.483T>C synonymous_variant 0.2
thyA 3074004 c.468T>C synonymous_variant 0.17
Rv3083 3448497 c.-7T>A upstream_gene_variant 1.0
alr 3841059 p.Gly121Ala missense_variant 0.15
alr 3841069 p.Ile118Phe missense_variant 0.16
alr 3841079 c.342T>C synonymous_variant 0.16
rpoA 3877515 c.993G>C synonymous_variant 0.16
rpoA 3877553 p.Glu319Gln missense_variant 0.21
rpoA 3877571 p.Pro313Ala missense_variant 0.2
rpoA 3877587 c.921A>G synonymous_variant 0.16
rpoA 3877613 p.Ile299Val missense_variant 0.19
rpoA 3877656 c.852T>G synonymous_variant 0.2
rpoA 3877668 c.840A>G synonymous_variant 0.2
rpoA 3877679 p.Ala277Ser missense_variant 0.16
rpoA 3877686 c.822A>G synonymous_variant 0.17
rpoA 3877692 c.816G>C synonymous_variant 0.2
rpoA 3877704 c.804G>C synonymous_variant 0.19
rpoA 3877743 c.765T>C synonymous_variant 0.26
rpoA 3877764 c.744C>G synonymous_variant 0.29
rpoA 3877770 c.738A>G synonymous_variant 0.25
rpoA 3877776 c.732T>C synonymous_variant 0.28
rpoA 3877782 c.726T>C synonymous_variant 0.29
rpoA 3877791 c.717C>G synonymous_variant 0.29
rpoA 3877818 c.690A>G synonymous_variant 0.26
rpoA 3877839 c.669G>C synonymous_variant 0.19
rpoA 3877848 c.660C>T synonymous_variant 0.21
rpoA 3877857 c.651G>A synonymous_variant 0.19
rpoA 3877866 c.642G>C synonymous_variant 0.22
rpoA 3877875 c.633T>G synonymous_variant 0.24
rpoA 3877878 c.630G>C synonymous_variant 0.23
rpoA 3877890 c.618C>T synonymous_variant 0.25
rpoA 3877896 c.612G>C synonymous_variant 0.26
rpoA 3877900 p.Ser203Asn missense_variant 0.23
rpoA 3877905 c.603A>G synonymous_variant 0.23
rpoA 3877909 p.Asn200Ser missense_variant 0.21
rpoA 3877920 c.588G>C synonymous_variant 0.23
rpoA 3877923 c.585C>T synonymous_variant 0.24
rpoA 3877926 c.582G>C synonymous_variant 0.25
rpoA 3877962 c.546G>T synonymous_variant 0.36
rpoA 3877986 c.522G>C synonymous_variant 0.21
rpoA 3877989 c.519A>G synonymous_variant 0.23
rpoA 3878001 c.507A>G synonymous_variant 0.23
rpoA 3878022 c.486T>C synonymous_variant 0.16
rpoA 3878094 c.414C>G synonymous_variant 0.18
rpoA 3878103 c.405A>G synonymous_variant 0.17
rpoA 3878106 c.402G>C synonymous_variant 0.19
rpoA 3878118 c.390T>C synonymous_variant 0.24
rpoA 3878130 c.378C>G synonymous_variant 0.2
rpoA 3878292 c.216T>C synonymous_variant 0.16
rpoA 3878340 c.168C>T synonymous_variant 0.15
rpoA 3878346 c.162T>C synonymous_variant 0.18
rpoA 3878364 c.144A>T synonymous_variant 0.23
rpoA 3878367 c.141C>G synonymous_variant 0.23
rpoA 3878376 c.132G>C synonymous_variant 0.24
rpoA 3878385 c.123C>G synonymous_variant 0.2
rpoA 3878388 c.120C>G synonymous_variant 0.2
rpoA 3878391 c.117T>C synonymous_variant 0.21
rpoA 3878415 c.93C>T synonymous_variant 0.21
rpoA 3878424 c.84G>C synonymous_variant 0.26
rpoA 3878436 c.72A>G synonymous_variant 0.23
rpoA 3878442 c.66G>C synonymous_variant 0.22
rpoA 3878672 c.-165A>T upstream_gene_variant 0.15
clpC1 4038407 c.2298G>C synonymous_variant 0.18
clpC1 4038419 c.2286T>C synonymous_variant 0.18
clpC1 4038530 p.Glu725Asp missense_variant 0.17
clpC1 4038782 c.1923G>C synonymous_variant 0.18
clpC1 4038812 c.1893T>C synonymous_variant 0.3
clpC1 4038821 c.1884G>A synonymous_variant 0.3
clpC1 4038845 c.1860G>C synonymous_variant 0.31
clpC1 4038860 c.1845G>C synonymous_variant 0.29
clpC1 4038878 c.1827A>G synonymous_variant 0.29
clpC1 4038908 c.1797C>G synonymous_variant 0.24
clpC1 4038914 c.1791G>C synonymous_variant 0.24
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.25
clpC1 4038953 c.1752A>G synonymous_variant 0.27
clpC1 4038956 c.1749T>C synonymous_variant 0.25
clpC1 4038965 c.1740T>C synonymous_variant 0.23
clpC1 4038971 c.1734T>C synonymous_variant 0.15
clpC1 4038974 c.1731T>C synonymous_variant 0.15
clpC1 4038989 c.1716T>C synonymous_variant 0.17
clpC1 4039004 c.1701C>G synonymous_variant 0.17
clpC1 4039022 c.1683A>G synonymous_variant 0.18
clpC1 4039064 c.1641C>T synonymous_variant 0.2
clpC1 4039097 c.1608G>C synonymous_variant 0.18
clpC1 4039103 c.1602T>C synonymous_variant 0.2
clpC1 4039106 c.1599G>C synonymous_variant 0.2
clpC1 4039112 c.1593C>G synonymous_variant 0.17
clpC1 4039121 c.1584T>C synonymous_variant 0.18
clpC1 4039142 c.1563A>G synonymous_variant 0.21
clpC1 4039145 c.1560G>C synonymous_variant 0.21
clpC1 4039226 c.1479T>C synonymous_variant 0.2
clpC1 4039229 c.1476C>G synonymous_variant 0.24
clpC1 4039274 c.1431G>C synonymous_variant 0.22
clpC1 4039286 c.1419T>C synonymous_variant 0.21
clpC1 4039295 c.1410A>C synonymous_variant 0.27
clpC1 4039298 c.1407T>C synonymous_variant 0.28
clpC1 4039319 c.1386T>C synonymous_variant 0.22
clpC1 4039322 c.1383T>C synonymous_variant 0.19
clpC1 4039328 c.1377A>C synonymous_variant 0.17
clpC1 4039331 c.1374C>G synonymous_variant 0.17
clpC1 4039338 p.Thr456Gln missense_variant 0.14
clpC1 4039349 c.1356C>T synonymous_variant 0.19
clpC1 4039352 c.1353C>G synonymous_variant 0.19
clpC1 4039364 c.1341C>G synonymous_variant 0.29
clpC1 4039391 c.1314T>G synonymous_variant 0.36
clpC1 4039397 c.1308A>G synonymous_variant 0.32
clpC1 4039409 c.1296T>C synonymous_variant 0.33
clpC1 4039412 c.1293T>G synonymous_variant 0.35
clpC1 4039415 p.Glu430Asp missense_variant 0.33
clpC1 4039430 c.1275T>C synonymous_variant 0.35
clpC1 4039442 c.1263A>G synonymous_variant 0.36
clpC1 4039454 c.1251A>G synonymous_variant 0.34
clpC1 4039463 c.1242C>G synonymous_variant 0.26
clpC1 4039466 c.1239T>C synonymous_variant 0.26
clpC1 4039469 c.1236T>C synonymous_variant 0.23
clpC1 4039480 c.1225C>A synonymous_variant 0.2
clpC1 4039481 c.1224T>G synonymous_variant 0.2
clpC1 4039517 c.1188C>G synonymous_variant 0.25
clpC1 4039556 c.1149G>C synonymous_variant 0.15
clpC1 4039559 c.1146C>G synonymous_variant 0.15
clpC1 4039562 c.1143C>G synonymous_variant 0.16
clpC1 4039565 c.1140G>C synonymous_variant 0.16
clpC1 4039576 p.Ala377Pro missense_variant 0.16
clpC1 4039577 c.1128T>C synonymous_variant 0.16
clpC1 4039589 c.1116G>C synonymous_variant 0.18
clpC1 4039610 c.1095G>C synonymous_variant 0.18
clpC1 4039616 c.1089G>C synonymous_variant 0.18
clpC1 4039622 c.1083C>T synonymous_variant 0.15
clpC1 4039625 c.1080G>A synonymous_variant 0.17
clpC1 4039661 c.1044T>G synonymous_variant 0.31
clpC1 4039664 c.1041G>C synonymous_variant 0.3
clpC1 4039694 c.1011G>C synonymous_variant 0.2
clpC1 4039724 c.981A>G synonymous_variant 0.4
clpC1 4039729 p.Asp326Asn missense_variant 0.59
clpC1 4039751 c.954A>G synonymous_variant 0.36
clpC1 4039757 c.948A>G synonymous_variant 0.24
clpC1 4039760 c.945T>C synonymous_variant 0.31
clpC1 4039766 c.939T>C synonymous_variant 0.29
clpC1 4039769 c.936C>G synonymous_variant 0.29
clpC1 4039775 c.930G>C synonymous_variant 0.3
clpC1 4039778 c.927A>G synonymous_variant 0.3
clpC1 4039781 c.924G>C synonymous_variant 0.31
clpC1 4039790 c.915C>G synonymous_variant 0.28
clpC1 4039817 c.888A>C synonymous_variant 0.3
clpC1 4039820 c.885T>G synonymous_variant 0.31
clpC1 4039826 c.879C>G synonymous_variant 0.28
clpC1 4039831 c.874T>C synonymous_variant 0.3
clpC1 4039850 c.855T>C synonymous_variant 0.22
clpC1 4039865 c.840T>C synonymous_variant 0.19
clpC1 4039952 c.753T>C synonymous_variant 0.16
clpC1 4039979 c.726C>G synonymous_variant 0.15
clpC1 4039988 c.717C>G synonymous_variant 0.18
clpC1 4039991 c.714G>C synonymous_variant 0.18
clpC1 4040021 c.684A>C synonymous_variant 0.24
clpC1 4040024 c.681A>G synonymous_variant 0.24
clpC1 4040033 c.672G>C synonymous_variant 0.25
clpC1 4040036 c.669C>G synonymous_variant 0.25
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.2
clpC1 4040093 c.612C>G synonymous_variant 0.17
clpC1 4040105 c.600C>G synonymous_variant 0.25
clpC1 4040147 c.558A>G synonymous_variant 0.17
clpC1 4040165 c.540G>C synonymous_variant 0.14
clpC1 4040171 c.534C>G synonymous_variant 0.17
clpC1 4040228 c.477G>T synonymous_variant 0.14
clpC1 4040231 c.474C>T synonymous_variant 0.14
clpC1 4040237 c.468C>T synonymous_variant 0.14
clpC1 4040246 c.459C>G synonymous_variant 0.15
clpC1 4040291 c.414G>C synonymous_variant 0.2
clpC1 4040318 c.387C>G synonymous_variant 0.23
clpC1 4040330 c.375C>G synonymous_variant 0.19
clpC1 4040342 c.363C>G synonymous_variant 0.17
clpC1 4040471 c.234T>C synonymous_variant 0.18
clpC1 4040477 c.228G>C synonymous_variant 0.18
clpC1 4040480 c.225T>G synonymous_variant 0.18
clpC1 4040501 c.204C>T synonymous_variant 0.14
embC 4240780 c.918T>C synonymous_variant 0.22
embC 4240783 c.921G>C synonymous_variant 0.22
embC 4240789 c.927T>C synonymous_variant 0.22
embC 4240819 c.957A>G synonymous_variant 0.15
embC 4240828 c.966G>A synonymous_variant 0.16
embC 4240831 c.969T>G synonymous_variant 0.15
embC 4241032 c.1170G>C synonymous_variant 0.17
embC 4241038 c.1176G>C synonymous_variant 0.19
embC 4241047 c.1185C>G synonymous_variant 0.2
embC 4241050 c.1188T>G synonymous_variant 0.2
embC 4241053 c.1191G>C synonymous_variant 0.2
embC 4241089 c.1227C>G synonymous_variant 0.25
embC 4241095 c.1233C>T synonymous_variant 0.24
embC 4241107 c.1245G>C synonymous_variant 0.21
embC 4241146 c.1284C>G synonymous_variant 0.2
embC 4241158 c.1296T>C synonymous_variant 0.22
embC 4241161 c.1299C>G synonymous_variant 0.21
embC 4241162 c.1300T>C synonymous_variant 0.21
embC 4241170 c.1308G>C synonymous_variant 0.2
embC 4241173 c.1311C>T synonymous_variant 0.2
embC 4241179 c.1317G>A synonymous_variant 0.2
embC 4241203 c.1341T>C synonymous_variant 0.19
embC 4241206 c.1344G>C synonymous_variant 0.19
embC 4241218 c.1356G>C synonymous_variant 0.17
embC 4241233 c.1371G>C synonymous_variant 0.15
embC 4241449 c.1587C>G synonymous_variant 0.22
embC 4241453 p.Ile531Val missense_variant 0.2
embC 4241479 c.1617C>G synonymous_variant 0.18
embC 4241480 c.1618T>C synonymous_variant 0.17
embC 4241488 c.1626G>C synonymous_variant 0.22
embC 4241496 p.Ala545Gly missense_variant 0.21
embC 4241500 c.1638A>C synonymous_variant 0.19
embC 4241501 p.Ser547Thr missense_variant 0.2
embC 4241506 c.1644G>C synonymous_variant 0.19
embC 4241518 c.1656A>G synonymous_variant 0.18
embC 4241530 c.1668C>G synonymous_variant 0.15
embC 4241572 c.1710C>G synonymous_variant 0.16
embC 4241584 c.1722T>C synonymous_variant 0.16
embC 4241587 c.1725C>G synonymous_variant 0.18
embC 4241591 p.Leu577Val missense_variant 0.22
embC 4241611 c.1749G>C synonymous_variant 0.21
embC 4241614 c.1752A>C synonymous_variant 0.2
embC 4241626 c.1764T>C synonymous_variant 0.22
embC 4241635 c.1773G>C synonymous_variant 0.22
embC 4241644 c.1782G>C synonymous_variant 0.22
embC 4241648 c.1786_1788delTTGinsCTC synonymous_variant 0.22
embC 4241657 p.Ser599Pro missense_variant 0.17
embC 4241665 c.1803G>C synonymous_variant 0.17
embC 4241755 c.1893C>G synonymous_variant 0.15
embC 4241770 c.1908T>C synonymous_variant 0.19
embC 4241791 c.1929G>C synonymous_variant 0.17
embC 4241794 c.1932C>G synonymous_variant 0.16
embC 4241797 c.1935C>T synonymous_variant 0.17
embC 4241809 c.1947A>C synonymous_variant 0.16
embA 4242643 c.-590C>T upstream_gene_variant 0.94
embA 4245053 c.1821G>C synonymous_variant 0.16
embA 4245060 c.1828T>C synonymous_variant 0.16
embA 4245083 c.1851A>C synonymous_variant 0.22
embA 4245089 c.1857G>C synonymous_variant 0.22
embA 4245101 c.1869G>C synonymous_variant 0.21
embA 4245137 c.1905T>C synonymous_variant 0.24
embA 4245146 c.1914G>A synonymous_variant 0.2
embA 4245149 c.1917C>G synonymous_variant 0.18
embA 4245153 p.Ile641Val missense_variant 0.2
embA 4245182 c.1950T>C synonymous_variant 0.25
embA 4245189 c.1957C>T synonymous_variant 0.27
embA 4245198 p.Leu656Ile missense_variant 0.26
embA 4245207 c.1975T>C synonymous_variant 0.25
embA 4245215 c.1983A>C synonymous_variant 0.25
embA 4245222 p.Tyr664Gln missense_variant 0.24
embA 4245248 c.2016G>C synonymous_variant 0.22
embA 4245257 c.2025A>G synonymous_variant 0.17
embB 4245725 c.-789A>G upstream_gene_variant 0.15
embB 4245737 c.-777A>C upstream_gene_variant 0.18
embB 4245740 c.-774T>C upstream_gene_variant 0.17
embB 4246292 c.-222A>G upstream_gene_variant 0.17
embA 4246305 p.Ser1025Glu missense_variant 0.16
embA 4246308 p.Thr1026Ala missense_variant 0.16
embB 4246316 c.-198T>G upstream_gene_variant 0.2
embB 4246319 c.-195G>C upstream_gene_variant 0.2
embA 4246329 p.Thr1033Ala missense_variant 0.22
embB 4246349 c.-165C>G upstream_gene_variant 0.2
embA 4246359 p.Ala1043Ser missense_variant 0.17
embB 4246367 c.-147C>T upstream_gene_variant 0.16
embB 4246373 c.-141T>C upstream_gene_variant 0.15
embB 4246376 c.-138G>C upstream_gene_variant 0.15
embB 4246379 c.-135C>T upstream_gene_variant 0.15
embB 4247425 c.912G>C synonymous_variant 0.15
embB 4247434 c.921C>G synonymous_variant 0.16
embB 4247437 c.924A>G synonymous_variant 0.16
embB 4247440 c.927C>G synonymous_variant 0.16
embB 4247446 c.933C>T synonymous_variant 0.16
embB 4247464 c.951C>G synonymous_variant 0.2
embB 4247470 c.957T>C synonymous_variant 0.2
embB 4247491 c.978G>C synonymous_variant 0.23
embB 4247497 c.984T>C synonymous_variant 0.26
embB 4247512 c.999T>C synonymous_variant 0.23
embB 4247539 c.1026T>C synonymous_variant 0.18
embB 4247815 c.1302C>G synonymous_variant 0.16
embB 4247819 p.Val436Ile missense_variant 0.16
embB 4247830 c.1317A>G synonymous_variant 0.17
embB 4247836 c.1323A>G synonymous_variant 0.18
embB 4247839 c.1326G>C synonymous_variant 0.2
embB 4247866 c.1353G>C synonymous_variant 0.3
embB 4247875 c.1362G>C synonymous_variant 0.29
embB 4247876 c.1363C>T synonymous_variant 0.3
embB 4247881 c.1368G>C synonymous_variant 0.3
embB 4247887 c.1374C>T synonymous_variant 0.31
embB 4247893 c.1380C>T synonymous_variant 0.32
embB 4247899 p.Met462Ile missense_variant 0.32
embB 4247905 c.1392G>C synonymous_variant 0.32
embB 4247909 c.1396T>C synonymous_variant 0.3
embB 4247932 c.1419C>G synonymous_variant 0.25
embB 4247940 p.Leu476Trp missense_variant 0.22
embB 4247945 c.1432T>C synonymous_variant 0.19
embB 4247951 p.Ser480Ala missense_variant 0.18
embB 4247956 c.1443G>C synonymous_variant 0.18
embB 4247974 c.1461C>G synonymous_variant 0.16
embB 4248035 p.Val508Ile missense_variant 0.16
embB 4248040 c.1527C>G synonymous_variant 0.16
embB 4248041 p.Ala510Thr missense_variant 0.15
embB 4248070 c.1557T>C synonymous_variant 0.22
embB 4248085 c.1572T>C synonymous_variant 0.24
embB 4248097 c.1584C>G synonymous_variant 0.26
embB 4248130 c.1617G>C synonymous_variant 0.25
embB 4248133 c.1620C>G synonymous_variant 0.25
embB 4248139 c.1626C>G synonymous_variant 0.24
embB 4248142 c.1629T>C synonymous_variant 0.24
embB 4248143 c.1630T>C synonymous_variant 0.24
embB 4248157 c.1644A>G synonymous_variant 0.24
embB 4248220 c.1707A>C synonymous_variant 0.16
embB 4248457 c.1944T>C synonymous_variant 0.15
embB 4249375 c.2862G>C synonymous_variant 0.16
embB 4249381 c.2868A>G synonymous_variant 0.17
embB 4249384 c.2871G>T synonymous_variant 0.19
embB 4249417 c.2904A>G synonymous_variant 0.24
embB 4249423 p.Asp970Glu missense_variant 0.26
embB 4249424 p.Leu971Met missense_variant 0.27
embB 4249429 c.2916C>T synonymous_variant 0.27
embB 4249432 c.2919A>G synonymous_variant 0.26
embB 4249441 c.2928A>G synonymous_variant 0.26
embB 4249444 c.2931T>C synonymous_variant 0.31
embB 4249447 c.2934G>A synonymous_variant 0.29
embB 4249469 p.Leu986Met missense_variant 0.28
embB 4249486 c.2973T>G synonymous_variant 0.26
embB 4249498 c.2985G>C synonymous_variant 0.21
embB 4249521 p.Ala1003Val missense_variant 0.21
embB 4249525 c.3012T>C synonymous_variant 0.21
embB 4249529 p.Ile1006Val missense_variant 0.21
embB 4249532 p.Ala1007Thr missense_variant 0.22
embB 4249537 c.3024A>G synonymous_variant 0.21
embB 4249543 c.3030G>C synonymous_variant 0.22
embB 4249546 c.3033G>A synonymous_variant 0.21
embB 4249558 c.3045A>C synonymous_variant 0.16
embB 4249568 p.Ser1019Thr missense_variant 0.15
embB 4249756 c.3243C>T synonymous_variant 1.0
aftB 4267580 c.1257G>T synonymous_variant 0.17
aftB 4267604 c.1233C>G synonymous_variant 0.2
aftB 4267607 c.1230G>A synonymous_variant 0.2
aftB 4267622 c.1215G>C synonymous_variant 0.21
aftB 4267625 c.1212T>C synonymous_variant 0.21
aftB 4267628 c.1209C>G synonymous_variant 0.21
aftB 4267634 p.Arg401His missense_variant 0.22
aftB 4267649 c.1188T>C synonymous_variant 0.24
aftB 4268164 p.Gln225Glu missense_variant 0.2
aftB 4268169 p.Ala223Gly missense_variant 0.19
aftB 4268171 c.666G>C synonymous_variant 0.19
aftB 4268179 c.658T>C synonymous_variant 0.2
aftB 4268182 p.Phe219Leu missense_variant 0.2
aftB 4268183 c.654A>T synonymous_variant 0.2
aftB 4268193 p.Leu215Ala missense_variant 0.19
aftB 4268225 c.612G>C synonymous_variant 0.15
aftB 4268236 p.Leu201Met missense_variant 0.15
aftB 4269012 c.-176G>C upstream_gene_variant 0.18
aftB 4269027 c.-191C>T upstream_gene_variant 0.16
aftB 4269201 c.-365A>G upstream_gene_variant 0.24
ubiA 4269220 p.Ala205Lys missense_variant 0.24
aftB 4269222 c.-386T>C upstream_gene_variant 0.24
aftB 4269242 c.-406C>T upstream_gene_variant 0.28
ubiA 4269243 p.His197Gln missense_variant 0.26
aftB 4269249 c.-413G>A upstream_gene_variant 0.3
aftB 4269258 c.-422C>T upstream_gene_variant 0.3
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0