Rv3596c - c.228G>C
Drug resistance types
29 Sensitive
3 RR-TB
51 HR-TB
14 MDR-TB
5 Pre-XDR-TB
1 XDR-TB
140 Other
lineage Counts
| lineage | Count |
|---|---|
| 22 | |
| lineage4.3.3 | 3 |
| lineage2.1;lineage4.9 | 15 |
| lineage4.9 | 81 |
| lineage4.9;lineage6.3 | 7 |
| La3;lineage4.9 | 2 |
| lineage2.1 | 5 |
| lineage3.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage4.1.2.1 | 8 |
| lineage2.2.1.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 15 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.8 | 4 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage1.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage1.1;lineage4 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage3 | 4 |
| lineage5.2 | 2 |
| La3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.7 | 2 |
| lineage4 | 2 |
| lineage1.1.1 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.1.3 | 1 |
| La1.6;lineage4 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| La1.8.1 | 1 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 243 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7496509 | Other | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR25827682 | Other | None | ERR9787197 | Other | None | ERR181824 | HR-TB | lineage4.9 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1173363 | Other | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR29051093 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR3797029 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR29772570 | Other | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR1063896 | Sensitive | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR3675248 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675236 | Other | None | ERR4596902 | MDR-TB | lineage3 | None | SRR1165699 | Other | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR1172728 | RR-TB | La3 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR9117709 | Other | None | SRR3675549 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1173118 | Other | lineage2.2.1 | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4818615 | Sensitive | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR176651 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | SRR1173788 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR1169194 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR736856 | Sensitive | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR1063855 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR7535086 | Other | None | ERR926159 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR28119777 | Other | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR6046305 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | SRR6789626 | Other | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4816999 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR4800341 | Other | lineage3 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None |
|---|
