TB-Profiler result

Run: ERR9786076
Summary

Run ID: ERR9786076

Sample name:

Date: 02-04-2023 12:07:02

Number of reads: 1829329

Percentage reads mapped: 55.47

Strain: lineage3

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9017 c.1716C>G synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760463 c.657C>T synonymous_variant 0.15
rpoB 760475 c.669A>G synonymous_variant 0.16
rpoB 760484 c.678A>G synonymous_variant 0.17
rpoB 760496 c.690G>T synonymous_variant 0.19
rpoB 760508 c.702G>C synonymous_variant 0.23
rpoB 760511 c.705G>C synonymous_variant 0.24
rpoB 760522 p.Ser239Asn missense_variant 0.27
rpoB 760527 p.Gln241Glu missense_variant 0.26
rpoB 760532 c.726T>C synonymous_variant 0.26
rpoB 760534 p.Val243Ala missense_variant 0.25
rpoB 760541 c.735G>T synonymous_variant 0.25
rpoB 760547 c.741G>C synonymous_variant 0.26
rpoB 760563 p.Arg253Met missense_variant 0.28
rpoB 760568 c.762G>C synonymous_variant 0.28
rpoB 760571 c.765G>C synonymous_variant 0.28
rpoB 760591 p.Val262Ala missense_variant 0.3
rpoB 760596 p.Thr264Gln missense_variant 0.3
rpoB 760607 c.801G>A synonymous_variant 0.29
rpoB 760611 c.805_807delTTGinsCTC synonymous_variant 0.28
rpoB 760616 c.810C>T synonymous_variant 0.28
rpoB 760625 c.819C>G synonymous_variant 0.29
rpoB 760629 c.823C>T synonymous_variant 0.3
rpoB 760646 c.840C>G synonymous_variant 0.28
rpoB 760655 c.849A>G synonymous_variant 0.27
rpoB 760658 c.852G>A synonymous_variant 0.27
rpoB 760661 c.855A>C synonymous_variant 0.27
rpoB 760670 c.864G>C synonymous_variant 0.26
rpoB 760674 c.868T>C synonymous_variant 0.26
rpoB 760679 c.873A>G synonymous_variant 0.25
rpoB 760683 c.877T>C synonymous_variant 0.26
rpoB 760724 c.918T>C synonymous_variant 0.13
rpoB 761171 c.1365C>T synonymous_variant 0.12
rpoB 761180 c.1374A>C synonymous_variant 0.16
rpoB 761183 c.1377T>C synonymous_variant 0.16
rpoB 761189 c.1383T>C synonymous_variant 0.18
rpoB 761195 c.1389G>C synonymous_variant 0.17
rpoB 761198 c.1392G>C synonymous_variant 0.17
rpoB 761204 c.1398C>T synonymous_variant 0.17
rpoB 761249 c.1443A>G synonymous_variant 0.17
rpoB 761255 c.1449T>G synonymous_variant 0.17
rpoB 761258 c.1452G>A synonymous_variant 0.16
rpoB 761261 c.1455G>C synonymous_variant 0.16
rpoB 761264 c.1458C>G synonymous_variant 0.17
rpoB 761273 c.1467T>C synonymous_variant 0.16
rpoB 761289 p.Ser495Ala missense_variant 0.14
rpoB 762002 c.2196C>G synonymous_variant 0.15
rpoB 762003 p.Asn733Gln missense_variant 0.15
rpoB 762011 c.2205G>C synonymous_variant 0.15
rpoB 762014 c.2208C>G synonymous_variant 0.14
rpoB 762017 c.2211A>G synonymous_variant 0.15
rpoB 762020 p.Glu738Asp missense_variant 0.15
rpoB 762026 c.2220G>C synonymous_variant 0.15
rpoB 762041 c.2235C>T synonymous_variant 0.21
rpoB 762047 c.2241G>A synonymous_variant 0.21
rpoB 762053 c.2247T>C synonymous_variant 0.22
rpoB 762056 c.2250G>A synonymous_variant 0.22
rpoB 762062 c.2256T>C synonymous_variant 0.23
rpoB 762065 c.2259T>C synonymous_variant 0.24
rpoB 762083 c.2277T>C synonymous_variant 0.25
rpoB 762086 c.2280G>C synonymous_variant 0.25
rpoB 762101 c.2295C>G synonymous_variant 0.27
rpoB 762104 c.2298C>T synonymous_variant 0.27
rpoB 762114 p.Ile770Val missense_variant 0.28
rpoB 762137 c.2331C>T synonymous_variant 0.29
rpoB 762143 c.2337T>C synonymous_variant 0.29
rpoB 762161 c.2355C>G synonymous_variant 0.3
rpoB 762176 c.2370T>C synonymous_variant 0.28
rpoB 762185 c.2379G>C synonymous_variant 0.27
rpoB 762209 c.2403C>G synonymous_variant 0.27
rpoB 762221 c.2415G>A synonymous_variant 0.28
rpoB 762233 c.2427G>C synonymous_variant 0.26
rpoB 762236 c.2430G>C synonymous_variant 0.27
rpoB 762254 c.2448T>C synonymous_variant 0.25
rpoB 762257 c.2451C>G synonymous_variant 0.26
rpoB 762266 c.2460T>G synonymous_variant 0.27
rpoB 762275 c.2469C>G synonymous_variant 0.26
rpoB 762290 c.2484C>T synonymous_variant 0.26
rpoB 762293 c.2487T>C synonymous_variant 0.24
rpoB 762305 c.2499G>T synonymous_variant 0.23
rpoB 762329 c.2523G>C synonymous_variant 0.18
rpoB 762338 c.2532T>C synonymous_variant 0.16
rpoB 762347 c.2541T>C synonymous_variant 0.14
rpoB 762362 p.Glu852Asp missense_variant 0.15
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoC 762452 c.-918G>C upstream_gene_variant 0.13
rpoB 762879 p.Met1025Leu missense_variant 0.17
rpoC 762899 c.-471G>C upstream_gene_variant 0.23
rpoC 762923 c.-447C>G upstream_gene_variant 0.24
rpoC 762929 c.-441G>C upstream_gene_variant 0.24
rpoC 762947 c.-423C>G upstream_gene_variant 0.25
rpoC 762962 c.-408C>T upstream_gene_variant 0.24
rpoC 762989 c.-381G>T upstream_gene_variant 0.26
rpoC 762995 c.-375G>T upstream_gene_variant 0.25
rpoC 762998 c.-372G>A upstream_gene_variant 0.24
rpoC 763004 c.-366G>A upstream_gene_variant 0.24
rpoC 763028 c.-342T>C upstream_gene_variant 0.28
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763049 c.-321G>A upstream_gene_variant 0.33
rpoC 763053 c.-317T>C upstream_gene_variant 0.33
rpoC 763070 c.-300T>C upstream_gene_variant 0.32
rpoB 763074 p.Thr1090Val missense_variant 0.33
rpoC 763079 c.-291C>G upstream_gene_variant 0.33
rpoC 763085 c.-285C>G upstream_gene_variant 0.33
rpoC 763088 c.-282C>G upstream_gene_variant 0.33
rpoC 763094 c.-276G>C upstream_gene_variant 0.32
rpoC 763115 c.-255T>C upstream_gene_variant 0.28
rpoC 763124 c.-246C>T upstream_gene_variant 0.25
rpoC 763139 c.-231C>T upstream_gene_variant 0.24
rpoC 763142 c.-228C>G upstream_gene_variant 0.24
rpoC 763145 c.-225G>A upstream_gene_variant 0.24
rpoC 763157 c.-213G>T upstream_gene_variant 0.24
rpoC 763166 c.-204A>G upstream_gene_variant 0.22
rpoC 763172 c.-198G>C upstream_gene_variant 0.21
rpoC 763190 c.-180C>T upstream_gene_variant 0.17
rpoB 763206 p.Ser1134Cys missense_variant 0.12
rpoC 763444 c.75T>C synonymous_variant 0.13
rpoC 763453 c.84C>T synonymous_variant 0.13
rpoC 763459 c.90G>A synonymous_variant 0.13
rpoC 763468 c.99G>C synonymous_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.17
rpoC 763505 c.136C>T synonymous_variant 0.21
rpoC 763528 c.159G>T synonymous_variant 0.2
rpoC 763531 c.162G>C synonymous_variant 0.2
rpoC 763534 c.165T>C synonymous_variant 0.2
rpoC 763537 c.168C>G synonymous_variant 0.2
rpoC 763546 c.177A>G synonymous_variant 0.19
rpoC 763558 c.189C>T synonymous_variant 0.21
rpoC 763570 c.201G>C synonymous_variant 0.21
rpoC 763573 c.204G>C synonymous_variant 0.22
rpoC 763594 c.225C>T synonymous_variant 0.21
rpoC 763597 c.228G>A synonymous_variant 0.22
rpoC 763633 c.264T>C synonymous_variant 0.2
rpoC 763651 c.282C>T synonymous_variant 0.18
rpoC 763660 c.291T>G synonymous_variant 0.17
rpoC 763666 c.297G>C synonymous_variant 0.17
rpoC 763669 c.300C>G synonymous_variant 0.16
rpoC 763985 p.Arg206Asn missense_variant 0.12
rpoC 764005 c.636G>C synonymous_variant 0.14
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.14
rpoC 764032 p.Asp221Glu missense_variant 0.14
rpoC 764040 p.Ser224Asn missense_variant 0.14
rpoC 764044 c.675T>C synonymous_variant 0.14
rpoC 764059 c.690G>C synonymous_variant 0.16
rpoC 764077 c.708C>G synonymous_variant 0.14
rpoC 764084 p.Asn239Glu missense_variant 0.12
rpoC 764101 c.732C>G synonymous_variant 0.12
rpoC 764102 p.Val245Leu missense_variant 0.12
rpoC 764131 c.762T>C synonymous_variant 0.16
rpoC 764134 c.765C>G synonymous_variant 0.16
rpoC 764140 c.771C>T synonymous_variant 0.15
rpoC 764146 c.777G>A synonymous_variant 0.14
rpoC 764149 c.780G>C synonymous_variant 0.14
rpoC 764164 p.Ile265Met missense_variant 0.13
rpoC 764239 c.870T>G synonymous_variant 0.12
rpoC 764245 c.876C>G synonymous_variant 0.13
rpoC 764344 c.975C>G synonymous_variant 0.16
rpoC 764353 c.984G>T synonymous_variant 0.15
rpoC 764365 c.996C>T synonymous_variant 0.14
rpoC 764371 c.1002G>C synonymous_variant 0.15
rpoC 764380 c.1011G>C synonymous_variant 0.18
rpoC 764387 c.1018T>C synonymous_variant 0.18
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.19
rpoC 764428 c.1059G>T synonymous_variant 0.21
rpoC 764434 c.1065A>G synonymous_variant 0.19
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.19
rpoC 764446 c.1077T>C synonymous_variant 0.21
rpoC 764449 c.1080G>C synonymous_variant 0.22
rpoC 764458 c.1089G>C synonymous_variant 0.26
rpoC 764461 c.1092A>G synonymous_variant 0.28
rpoC 764521 c.1152T>C synonymous_variant 0.32
rpoC 764527 c.1158C>T synonymous_variant 0.32
rpoC 764539 c.1170C>G synonymous_variant 0.3
rpoC 764548 c.1179G>C synonymous_variant 0.26
rpoC 764554 c.1185C>T synonymous_variant 0.26
rpoC 764560 c.1191T>C synonymous_variant 0.25
rpoC 764566 c.1197C>G synonymous_variant 0.25
rpoC 764572 c.1203G>C synonymous_variant 0.22
rpoC 764575 c.1206T>G synonymous_variant 0.21
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.21
rpoC 764593 c.1224C>T synonymous_variant 0.19
rpoC 764611 c.1242G>C synonymous_variant 0.2
rpoC 764626 c.1257C>T synonymous_variant 0.19
rpoC 764632 c.1263T>C synonymous_variant 0.18
rpoC 764644 c.1275G>C synonymous_variant 0.18
rpoC 764650 c.1281G>T synonymous_variant 0.18
rpoC 764662 c.1293G>C synonymous_variant 0.19
rpoC 764677 c.1308C>G synonymous_variant 0.18
rpoC 764680 c.1311G>A synonymous_variant 0.18
rpoC 764701 c.1332C>G synonymous_variant 0.2
rpoC 764746 c.1377G>C synonymous_variant 0.21
rpoC 764752 c.1383G>C synonymous_variant 0.21
rpoC 764758 c.1389C>G synonymous_variant 0.22
rpoC 764764 c.1395T>C synonymous_variant 0.22
rpoC 764779 c.1410G>A synonymous_variant 0.22
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.23
rpoC 764791 c.1422C>G synonymous_variant 0.23
rpoC 764803 c.1434C>G synonymous_variant 0.24
rpoC 764809 c.1440C>G synonymous_variant 0.23
rpoC 764812 c.1443C>G synonymous_variant 0.22
rpoC 764815 c.1446A>G synonymous_variant 0.22
rpoC 764851 c.1482C>T synonymous_variant 0.21
rpoC 764858 c.1489T>C synonymous_variant 0.21
rpoC 764869 c.1500C>T synonymous_variant 0.2
rpoC 764872 c.1503A>G synonymous_variant 0.2
rpoC 764875 c.1506C>G synonymous_variant 0.2
rpoC 764887 c.1518G>C synonymous_variant 0.16
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.15
rpoC 764908 c.1539G>A synonymous_variant 0.15
rpoC 764911 c.1542A>G synonymous_variant 0.14
rpoC 764912 p.Met515Gln missense_variant 0.14
rpoC 764926 c.1557C>T synonymous_variant 0.16
rpoC 764935 c.1566T>C synonymous_variant 0.14
rpoC 764947 c.1578G>A synonymous_variant 0.13
rpoC 764948 c.1579T>C synonymous_variant 0.13
rpoC 764968 c.1599T>C synonymous_variant 0.13
rpoC 765781 c.2412C>T synonymous_variant 0.14
rpoC 765784 c.2415C>G synonymous_variant 0.15
rpoC 765793 c.2424C>G synonymous_variant 0.15
rpoC 765796 c.2427C>T synonymous_variant 0.15
rpoC 765811 c.2442T>C synonymous_variant 0.16
rpoC 765814 c.2445A>T synonymous_variant 0.17
rpoC 765817 c.2448G>C synonymous_variant 0.17
rpoC 765820 c.2451G>C synonymous_variant 0.18
rpoC 765823 c.2454C>G synonymous_variant 0.18
rpoC 765826 c.2457T>G synonymous_variant 0.18
rpoC 765835 c.2466C>T synonymous_variant 0.18
rpoC 765844 c.2475C>G synonymous_variant 0.17
rpoC 765871 c.2502T>G synonymous_variant 0.19
rpoC 765875 p.Val836Ile missense_variant 0.18
rpoC 765886 c.2517C>G synonymous_variant 0.19
rpoC 765907 c.2538G>T synonymous_variant 0.2
rpoC 765910 c.2541G>C synonymous_variant 0.19
rpoC 765934 c.2565C>T synonymous_variant 0.17
rpoC 765940 c.2571A>T synonymous_variant 0.17
rpoC 765946 c.2577C>T synonymous_variant 0.14
rpoC 765947 c.2578T>C synonymous_variant 0.14
rpoC 765952 c.2583G>C synonymous_variant 0.13
rpoC 765955 c.2586C>T synonymous_variant 0.13
rpoC 765967 c.2598C>T synonymous_variant 0.14
rpoC 765982 c.2613C>T synonymous_variant 0.13
rpoC 766363 c.2994G>C synonymous_variant 0.12
rpoC 766372 c.3003G>A synonymous_variant 0.14
rpoC 766381 c.3012C>T synonymous_variant 0.15
rpoC 766384 c.3015A>G synonymous_variant 0.15
rpoC 766390 c.3021C>T synonymous_variant 0.16
rpoC 766393 c.3024C>G synonymous_variant 0.16
rpoC 766408 c.3039C>T synonymous_variant 0.17
rpoC 766426 c.3057C>T synonymous_variant 0.18
rpoC 766429 c.3061_3062insCGG disruptive_inframe_insertion 0.18
rpoC 766435 p.Glu1022Asp missense_variant 0.17
rpoC 766447 c.3078T>C synonymous_variant 0.22
rpoC 766456 c.3087C>G synonymous_variant 0.22
rpoC 766459 c.3090G>T synonymous_variant 0.23
rpoC 766483 c.3114G>C synonymous_variant 0.22
rpoC 766486 c.3117A>G synonymous_variant 0.22
rpoC 766489 c.3120G>C synonymous_variant 0.23
rpoC 766490 p.Arg1041Lys missense_variant 0.23
rpoC 766501 c.3132G>C synonymous_variant 0.24
rpoC 766513 p.Asp1048Glu missense_variant 0.25
rpoC 766517 p.Thr1050Ser missense_variant 0.25
rpoC 766525 c.3156G>C synonymous_variant 0.25
rpoC 766528 c.3159T>G synonymous_variant 0.25
rpoC 766534 c.3165C>G synonymous_variant 0.27
rpoC 766542 p.Gly1058Asp missense_variant 0.27
rpoC 766546 p.Glu1059Asp missense_variant 0.27
rpoC 766549 c.3180G>C synonymous_variant 0.25
rpoC 766568 p.Val1067Ile missense_variant 0.26
rpoC 766573 c.3204T>C synonymous_variant 0.25
rpoC 766576 c.3207C>T synonymous_variant 0.25
rpoC 766582 c.3213C>T synonymous_variant 0.25
rpoC 766585 c.3216T>C synonymous_variant 0.25
rpoC 766588 p.Glu1073Asp missense_variant 0.23
rpoC 766607 p.Ile1080Leu missense_variant 0.2
rpoC 766618 c.3249G>T synonymous_variant 0.18
rpoC 766630 c.3261G>T synonymous_variant 0.2
rpoC 766633 c.3264G>C synonymous_variant 0.21
rpoC 766645 p.Glu1092Asp missense_variant 0.19
rpoC 766657 c.3288A>G synonymous_variant 0.17
rpoC 766661 p.Val1098Leu missense_variant 0.16
rpoC 766666 c.3297C>G synonymous_variant 0.16
rpoC 766667 p.Ser1100Ala missense_variant 0.16
rpoC 766672 c.3303T>C synonymous_variant 0.17
rpoC 766675 c.3306C>T synonymous_variant 0.16
rpoC 766690 c.3321G>C synonymous_variant 0.14
rpoC 766700 c.3331C>T synonymous_variant 0.14
rpoC 766703 p.Met1112Leu missense_variant 0.14
rpoC 766712 p.Ser1115Ala missense_variant 0.15
rpoC 766717 c.3348C>G synonymous_variant 0.15
rpoC 766720 c.3351C>T synonymous_variant 0.15
rpoC 766726 c.3357T>C synonymous_variant 0.15
rpoC 766738 c.3369G>C synonymous_variant 0.16
rpoC 766742 p.Gln1125Met missense_variant 0.16
rpoC 766753 c.3384C>G synonymous_variant 0.17
rpoC 766754 p.Glu1129Gln missense_variant 0.17
rpoC 766765 c.3396A>C synonymous_variant 0.19
rpoC 766768 c.3399C>T synonymous_variant 0.19
rpoC 766774 c.3405T>C synonymous_variant 0.19
rpoC 766776 p.Arg1136His missense_variant 0.19
rpoC 766780 c.3411G>A synonymous_variant 0.19
rpoC 766799 p.Ala1144Ser missense_variant 0.2
rpoC 766804 c.3435A>G synonymous_variant 0.19
rpoC 766813 c.3444G>C synonymous_variant 0.2
rpoC 766837 c.3468G>C synonymous_variant 0.21
rpoC 766843 c.3474T>C synonymous_variant 0.21
rpoC 766867 c.3498C>G synonymous_variant 0.15
rpoC 766876 c.3507C>T synonymous_variant 0.16
rpoC 766882 c.3513C>T synonymous_variant 0.15
rpoC 766883 p.Ser1172Ala missense_variant 0.15
rpoC 766888 c.3519G>C synonymous_variant 0.14
rpoC 766894 c.3525T>C synonymous_variant 0.14
rpoC 766895 c.3526T>C synonymous_variant 0.14
rpoC 766900 c.3531T>C synonymous_variant 0.15
rpoC 766903 c.3534C>T synonymous_variant 0.15
rpoC 766909 c.3540G>C synonymous_variant 0.15
rpoC 766911 p.Ile1181Thr missense_variant 0.15
rpoC 766915 p.Asp1182Glu missense_variant 0.16
rpoC 766921 c.3552G>C synonymous_variant 0.16
rpoC 766933 c.3564A>G synonymous_variant 0.16
rpoC 766934 p.Glu1189Ser missense_variant 0.16
rpoC 766945 c.3576A>G synonymous_variant 0.17
rpoC 766948 c.3579G>C synonymous_variant 0.17
rpoC 766951 c.3582G>C synonymous_variant 0.18
rpoC 766963 c.3594T>C synonymous_variant 0.22
rpoC 766996 c.3627C>T synonymous_variant 0.22
rpoC 767002 c.3633G>C synonymous_variant 0.2
rpoC 767023 c.3654C>T synonymous_variant 0.21
rpoC 767044 c.3675G>C synonymous_variant 0.2
rpoC 767059 c.3690T>C synonymous_variant 0.17
rpoC 767062 c.3693C>A synonymous_variant 0.17
rpoC 767065 c.3696G>C synonymous_variant 0.17
rpoC 767071 c.3702C>G synonymous_variant 0.17
rpoC 767074 c.3705T>C synonymous_variant 0.17
rpoC 767093 c.3724_3725delAGinsTC synonymous_variant 0.15
rpoC 767098 c.3729T>C synonymous_variant 0.15
rpoC 767099 p.Lys1244Arg missense_variant 0.15
rpoC 767106 p.Asn1246Ile missense_variant 0.14
rpoC 767110 c.3741T>C synonymous_variant 0.13
rpoC 767113 c.3744G>C synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781682 c.123T>C synonymous_variant 0.15
rpsL 781700 c.141G>C synonymous_variant 0.14
rpsL 781706 c.147T>C synonymous_variant 0.14
rpsL 781709 c.150G>T synonymous_variant 0.14
rpsL 781714 c.156_157delTG frameshift_variant 0.14
rpsL 781718 c.159C>G synonymous_variant 0.14
rpsL 781723 c.166_168delAAG conservative_inframe_deletion 0.14
rpsL 781728 c.170_171insCGCCT frameshift_variant 0.14
rpsL 781733 c.174G>C synonymous_variant 0.14
rpsL 781736 c.177T>C synonymous_variant 0.14
rpsL 781737 p.Gln60Ala missense_variant 0.14
rpsL 781754 c.195G>C synonymous_variant 0.15
rpsL 781760 c.201T>C synonymous_variant 0.16
rpsL 781766 c.207C>T synonymous_variant 0.17
rpsL 781769 c.210G>A synonymous_variant 0.18
rpsL 781802 c.243G>C synonymous_variant 0.17
rpsL 781805 c.246G>C synonymous_variant 0.17
rpsL 781814 c.255C>T synonymous_variant 0.16
rpsL 781817 c.258G>T synonymous_variant 0.16
rpsL 781829 c.270G>T synonymous_variant 0.15
rpsL 781832 c.273T>C synonymous_variant 0.15
rplC 800636 c.-173C>T upstream_gene_variant 0.94
fbiC 1302982 p.Pro18Ala missense_variant 1.0
fbiC 1305494 c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT frameshift_variant&stop_lost&splice_region_variant 0.2
Rv1258c 1406968 c.372delT frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.17
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.16
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.16
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.17
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.16
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.16
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.17
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.19
rrs 1471978 n.133C>T non_coding_transcript_exon_variant 0.3
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.31
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.31
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.36
rrs 1472029 n.185_188delGGGA non_coding_transcript_exon_variant 0.35
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.35
rrs 1472041 n.196C>G non_coding_transcript_exon_variant 0.35
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.36
rrs 1472057 n.212C>A non_coding_transcript_exon_variant 0.35
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.36
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.33
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.33
rrs 1472070 n.225G>A non_coding_transcript_exon_variant 0.34
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.4
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.39
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.43
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.43
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.48
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.41
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.38
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 0.61
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.37
rrs 1472286 n.441C>A non_coding_transcript_exon_variant 0.37
rrs 1472288 n.443A>T non_coding_transcript_exon_variant 0.37
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.37
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.38
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.36
rrs 1472326 n.481T>A non_coding_transcript_exon_variant 0.36
rrs 1472328 n.483G>T non_coding_transcript_exon_variant 0.36
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 0.35
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.43
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.4
rrs 1472425 n.580T>C non_coding_transcript_exon_variant 0.4
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.37
rrs 1472437 n.592T>A non_coding_transcript_exon_variant 0.37
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.35
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.35
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.34
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.35
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.35
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.35
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.36
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.36
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.38
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.38
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.39
rrs 1472497 n.652G>T non_coding_transcript_exon_variant 0.45
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.42
rrs 1472580 n.735C>A non_coding_transcript_exon_variant 0.47
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.48
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.48
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.41
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.41
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.37
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.35
rrs 1472844 n.999C>A non_coding_transcript_exon_variant 0.35
rrs 1472845 n.1000G>A non_coding_transcript_exon_variant 0.35
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.34
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.34
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.34
rrs 1472855 n.1011_1012insGT non_coding_transcript_exon_variant 0.35
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.39
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.39
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.44
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.48
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.47
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.49
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.5
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.49
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.56
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.58
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.58
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.59
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.59
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.59
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.59
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.64
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.4
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.31
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.31
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.29
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.17
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.18
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.21
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.21
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.21
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.22
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.22
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.22
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.2
rrl 1473815 n.158T>A non_coding_transcript_exon_variant 0.19
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.19
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.19
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.19
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.19
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.19
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.18
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.18
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.18
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.15
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.15
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.14
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.15
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.18
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.22
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.2
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.19
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.19
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.21
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.25
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.27
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.26
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.26
rrl 1474296 n.640_647delCTCCGGAG non_coding_transcript_exon_variant 0.24
rrl 1474306 n.649A>T non_coding_transcript_exon_variant 0.24
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.24
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.29
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.28
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.29
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.31
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.31
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.33
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.3
rrl 1474413 n.756A>T non_coding_transcript_exon_variant 0.27
rrl 1474415 n.759_781delCACACGCGCATACGCGCGTGTGA non_coding_transcript_exon_variant 0.3
rrl 1474440 n.783T>G non_coding_transcript_exon_variant 0.27
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.27
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.28
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.26
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.25
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.23
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.23
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.27
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.41
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.38
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.37
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.37
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.36
rrl 1474662 n.1005C>T non_coding_transcript_exon_variant 0.38
rrl 1474664 n.1007G>T non_coding_transcript_exon_variant 0.37
rrl 1474666 n.1009T>G non_coding_transcript_exon_variant 0.36
rrl 1474670 n.1013C>G non_coding_transcript_exon_variant 0.37
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.34
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.34
rrl 1474679 n.1022G>C non_coding_transcript_exon_variant 0.36
rrl 1474684 n.1027T>C non_coding_transcript_exon_variant 0.36
rrl 1474687 n.1030C>A non_coding_transcript_exon_variant 0.37
rrl 1474688 n.1031G>A non_coding_transcript_exon_variant 0.37
rrl 1474708 n.1052dupG non_coding_transcript_exon_variant 0.38
rrl 1474711 n.1054_1055insA non_coding_transcript_exon_variant 0.37
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.36
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.35
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.38
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.39
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.38
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.38
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.37
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.34
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.29
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.2
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.17
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.17
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.17
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.17
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.17
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.17
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.17
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.19
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.18
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.15
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.17
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.14
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.12
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.13
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.16
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.14
rrl 1475615 n.1958C>A non_coding_transcript_exon_variant 0.92
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.16
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.2
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.21
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.39
rrl 1475735 n.2078T>C non_coding_transcript_exon_variant 0.36
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.33
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.32
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.32
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.34
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.38
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.46
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.46
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.49
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.48
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.46
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.48
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.47
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.45
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.42
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.42
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.42
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.43
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.43
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.43
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.43
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.44
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.44
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.44
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.44
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.46
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.49
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.5
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.52
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.51
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.52
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.51
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.51
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.5
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.54
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.54
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.54
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.55
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.55
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.54
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.5
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.5
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.5
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.5
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.51
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.51
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.41
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.41
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.4
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.4
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.25
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.25
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.22
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.19
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.18
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.19
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.19
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.18
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.19
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.15
rrl 1476758 n.3101G>A non_coding_transcript_exon_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 0.13
rpsA 1833733 c.192C>G synonymous_variant 0.13
rpsA 1833734 p.Ala65Ser missense_variant 0.13
rpsA 1833742 c.201A>G synonymous_variant 0.14
rpsA 1833745 c.204G>C synonymous_variant 0.14
rpsA 1833754 c.213G>A synonymous_variant 0.14
rpsA 1833760 c.219C>T synonymous_variant 0.14
rpsA 1833769 c.228C>G synonymous_variant 0.2
rpsA 1833787 c.246C>G synonymous_variant 0.2
rpsA 1833790 c.249T>C synonymous_variant 0.2
rpsA 1833793 c.252C>T synonymous_variant 0.2
rpsA 1833799 c.258C>G synonymous_variant 0.21
rpsA 1833802 c.261A>G synonymous_variant 0.2
rpsA 1833811 c.270G>C synonymous_variant 0.21
rpsA 1833835 c.294C>T synonymous_variant 0.24
rpsA 1833838 c.297G>C synonymous_variant 0.24
rpsA 1833841 c.300C>G synonymous_variant 0.24
rpsA 1833847 c.306C>G synonymous_variant 0.25
rpsA 1833856 c.315A>G synonymous_variant 0.25
rpsA 1833859 c.318C>G synonymous_variant 0.24
rpsA 1833862 c.321G>T synonymous_variant 0.24
rpsA 1833874 c.333T>C synonymous_variant 0.25
rpsA 1833886 c.345C>G synonymous_variant 0.25
rpsA 1833894 p.Ala118Glu missense_variant 0.25
rpsA 1833919 c.378C>T synonymous_variant 0.3
rpsA 1833920 p.Lys127Arg missense_variant 0.3
rpsA 1833928 c.387G>T synonymous_variant 0.29
rpsA 1833931 c.390C>G synonymous_variant 0.31
rpsA 1833949 c.408T>C synonymous_variant 0.31
rpsA 1833952 c.411C>T synonymous_variant 0.31
rpsA 1833964 c.423C>T synonymous_variant 0.33
rpsA 1833970 c.429G>T synonymous_variant 0.33
rpsA 1833979 c.438T>C synonymous_variant 0.34
rpsA 1833991 c.450C>G synonymous_variant 0.33
rpsA 1834000 c.459G>C synonymous_variant 0.33
rpsA 1834012 c.471G>C synonymous_variant 0.34
rpsA 1834015 c.474G>C synonymous_variant 0.33
rpsA 1834021 c.480C>T synonymous_variant 0.31
rpsA 1834030 c.489C>G synonymous_variant 0.32
rpsA 1834034 p.Ile165Val missense_variant 0.32
rpsA 1834051 c.510G>A synonymous_variant 0.32
rpsA 1834093 c.552G>C synonymous_variant 0.32
rpsA 1834099 c.558C>G synonymous_variant 0.3
rpsA 1834102 c.561T>C synonymous_variant 0.3
rpsA 1834144 c.603G>A synonymous_variant 0.25
rpsA 1834151 p.Asn204His missense_variant 0.22
rpsA 1834154 p.Asn205Gln missense_variant 0.21
rpsA 1834157 c.616T>C synonymous_variant 0.21
rpsA 1834162 c.621A>G synonymous_variant 0.22
rpsA 1834165 c.624A>G synonymous_variant 0.22
rpsA 1834167 c.628_629delAC frameshift_variant 0.22
rpsA 1834172 c.631_632insGG frameshift_variant 0.21
rpsA 1834177 c.636A>C synonymous_variant 0.23
rpsA 1834186 c.645C>G synonymous_variant 0.22
rpsA 1834189 c.648G>C synonymous_variant 0.22
rpsA 1834195 c.654G>C synonymous_variant 0.23
rpsA 1834213 c.672G>C synonymous_variant 0.24
rpsA 1834234 c.693G>C synonymous_variant 0.24
rpsA 1834240 c.699T>C synonymous_variant 0.23
rpsA 1834249 c.708T>C synonymous_variant 0.22
rpsA 1834261 c.720A>G synonymous_variant 0.22
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834273 c.732C>T synonymous_variant 0.26
rpsA 1834279 c.738C>T synonymous_variant 0.26
rpsA 1834298 p.Gln253Glu missense_variant 0.27
rpsA 1834303 c.762T>C synonymous_variant 0.27
rpsA 1834306 c.765T>C synonymous_variant 0.27
rpsA 1834307 p.Asp256Asn missense_variant 0.26
rpsA 1834327 c.786G>T synonymous_variant 0.26
rpsA 1834340 p.Met267Leu missense_variant 0.28
rpsA 1834345 c.804C>T synonymous_variant 0.27
rpsA 1834348 c.807T>C synonymous_variant 0.29
rpsA 1834354 c.813G>C synonymous_variant 0.29
rpsA 1834357 c.816T>C synonymous_variant 0.29
rpsA 1834361 c.820T>C synonymous_variant 0.29
rpsA 1834366 c.825A>G synonymous_variant 0.29
rpsA 1834369 c.828C>G synonymous_variant 0.29
rpsA 1834375 c.834G>C synonymous_variant 0.29
rpsA 1834378 c.837T>C synonymous_variant 0.31
rpsA 1834387 c.846C>T synonymous_variant 0.32
rpsA 1834399 p.His286Gln missense_variant 0.32
rpsA 1834411 c.870T>C synonymous_variant 0.31
rpsA 1834414 c.873C>T synonymous_variant 0.31
rpsA 1834417 c.876G>C synonymous_variant 0.3
rpsA 1834423 c.882G>C synonymous_variant 0.3
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.27
rpsA 1834465 c.924T>C synonymous_variant 0.26
rpsA 1834468 c.927A>G synonymous_variant 0.26
rpsA 1834489 c.948T>C synonymous_variant 0.25
rpsA 1834528 c.987T>C synonymous_variant 0.2
rpsA 1834534 c.993C>G synonymous_variant 0.19
rpsA 1834540 c.999G>C synonymous_variant 0.19
rpsA 1834543 c.1002C>G synonymous_variant 0.18
rpsA 1834546 c.1005T>C synonymous_variant 0.17
rpsA 1834552 c.1011G>C synonymous_variant 0.17
rpsA 1834555 c.1014T>G synonymous_variant 0.18
rpsA 1834557 p.Ala339Val missense_variant 0.18
rpsA 1834591 c.1050C>T synonymous_variant 0.2
rpsA 1834609 c.1068T>C synonymous_variant 0.2
rpsA 1834619 c.1078T>C synonymous_variant 0.2
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.21
rpsA 1834633 c.1092A>G synonymous_variant 0.21
rpsA 1834639 c.1098T>C synonymous_variant 0.2
rpsA 1834650 p.Thr370Ser missense_variant 0.15
rpsA 1834652 p.Glu371Pro missense_variant 0.16
rpsA 1834663 c.1122C>T synonymous_variant 0.17
rpsA 1834667 p.Ala376Ser missense_variant 0.17
rpsA 1834690 c.1149T>C synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 0.99
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.99
pncA 2289365 c.-125delC upstream_gene_variant 1.0
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
ribD 2986852 p.Gly5Asp missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612068 p.Gly350Glu missense_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.16
rpoA 3877617 c.891G>C synonymous_variant 0.17
rpoA 3877638 c.870T>C synonymous_variant 0.18
rpoA 3877653 c.855C>T synonymous_variant 0.18
rpoA 3877656 c.852T>G synonymous_variant 0.19
rpoA 3877662 c.846C>T synonymous_variant 0.19
rpoA 3877665 c.843C>G synonymous_variant 0.19
rpoA 3877674 c.834C>G synonymous_variant 0.18
rpoA 3877686 c.822A>G synonymous_variant 0.21
rpoA 3877692 c.816G>C synonymous_variant 0.21
rpoA 3877704 c.804G>T synonymous_variant 0.21
rpoA 3877716 c.792C>G synonymous_variant 0.25
rpoA 3877731 c.777G>T synonymous_variant 0.22
rpoA 3877734 c.774G>C synonymous_variant 0.23
rpoA 3877737 c.771G>C synonymous_variant 0.23
rpoA 3877740 c.768G>C synonymous_variant 0.24
rpoA 3877743 c.765T>C synonymous_variant 0.24
rpoA 3877749 c.759C>T synonymous_variant 0.25
rpoA 3877752 p.Asp252Glu missense_variant 0.25
rpoA 3877764 p.Ala248Gly missense_variant 0.26
rpoA 3877770 c.738A>C synonymous_variant 0.27
rpoA 3877773 c.735G>C synonymous_variant 0.27
rpoA 3877776 c.732T>C synonymous_variant 0.27
rpoA 3877785 c.723C>G synonymous_variant 0.27
rpoA 3877797 c.711G>C synonymous_variant 0.28
rpoA 3877800 c.708G>C synonymous_variant 0.27
rpoA 3877803 c.705G>C synonymous_variant 0.27
rpoA 3877815 c.693C>T synonymous_variant 0.29
rpoA 3877824 c.684G>A synonymous_variant 0.25
rpoA 3877833 c.675C>G synonymous_variant 0.25
rpoA 3877839 c.669G>T synonymous_variant 0.24
rpoA 3877842 c.666A>C synonymous_variant 0.24
rpoA 3877856 c.652T>C synonymous_variant 0.22
rpoA 3877857 c.651G>A synonymous_variant 0.22
rpoA 3877866 c.642G>C synonymous_variant 0.23
rpoA 3877875 c.633T>G synonymous_variant 0.23
rpoA 3877881 c.627G>C synonymous_variant 0.23
rpoA 3877884 c.624G>C synonymous_variant 0.23
rpoA 3877893 c.615C>G synonymous_variant 0.25
rpoA 3877898 p.Pro204Ala missense_variant 0.26
rpoA 3877905 c.603A>C synonymous_variant 0.28
rpoA 3877908 c.600T>C synonymous_variant 0.28
rpoA 3877926 c.582G>C synonymous_variant 0.31
rpoA 3877932 c.576G>C synonymous_variant 0.32
rpoA 3877936 p.Lys191Arg missense_variant 0.33
rpoA 3877962 c.546G>T synonymous_variant 0.29
rpoA 3877971 p.Asp179Glu missense_variant 0.26
rpoA 3877974 c.534G>C synonymous_variant 0.26
rpoA 3877989 c.519A>G synonymous_variant 0.22
rpoA 3878001 c.507A>G synonymous_variant 0.19
rpoA 3878010 c.498C>G synonymous_variant 0.18
rpoA 3878016 c.492C>G synonymous_variant 0.15
rpoA 3878019 c.489A>G synonymous_variant 0.15
rpoA 3878022 c.486T>C synonymous_variant 0.15
rpoA 3878025 c.483C>G synonymous_variant 0.16
rpoA 3878028 c.480G>C synonymous_variant 0.16
rpoA 3878031 c.477T>C synonymous_variant 0.16
rpoA 3878037 c.471C>G synonymous_variant 0.16
rpoA 3878043 p.Ser155Thr missense_variant 0.15
rpoA 3878046 c.462T>G synonymous_variant 0.17
rpoA 3878050 p.Arg153Lys missense_variant 0.15
rpoA 3878055 c.453A>G synonymous_variant 0.18
rpoA 3878073 c.435C>T synonymous_variant 0.19
rpoA 3878079 c.429C>T synonymous_variant 0.19
rpoA 3878082 c.426T>C synonymous_variant 0.19
rpoA 3878085 c.423G>A synonymous_variant 0.19
rpoA 3878094 c.414C>G synonymous_variant 0.19
rpoA 3878102 p.Val136Ile missense_variant 0.18
rpoA 3878103 c.405A>G synonymous_variant 0.18
rpoA 3878106 c.402G>C synonymous_variant 0.18
rpoA 3878118 c.390T>C synonymous_variant 0.16
rpoA 3878127 c.381G>C synonymous_variant 0.14
rpoA 3878136 c.372C>T synonymous_variant 0.14
clpC1 4038773 c.1932T>C synonymous_variant 0.15
clpC1 4038782 c.1923G>T synonymous_variant 0.16
clpC1 4038790 c.1915C>T synonymous_variant 0.2
clpC1 4038795 p.Ser637Thr missense_variant 0.22
clpC1 4038812 c.1893T>C synonymous_variant 0.26
clpC1 4038860 c.1845G>C synonymous_variant 0.28
clpC1 4038878 c.1827A>G synonymous_variant 0.35
clpC1 4038905 c.1800A>C synonymous_variant 0.33
clpC1 4038908 c.1797C>G synonymous_variant 0.33
clpC1 4038911 c.1794G>T synonymous_variant 0.33
clpC1 4038914 c.1791G>C synonymous_variant 0.34
clpC1 4038917 c.1788C>T synonymous_variant 0.33
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.36
clpC1 4038932 c.1773G>C synonymous_variant 0.37
clpC1 4038941 c.1764G>C synonymous_variant 0.39
clpC1 4038953 c.1752A>G synonymous_variant 0.37
clpC1 4038956 c.1749T>C synonymous_variant 0.37
clpC1 4038962 c.1743C>T synonymous_variant 0.38
clpC1 4038971 c.1734T>C synonymous_variant 0.38
clpC1 4038974 c.1731T>C synonymous_variant 0.39
clpC1 4038997 c.1708T>C synonymous_variant 0.4
clpC1 4039004 c.1701C>G synonymous_variant 0.38
clpC1 4039010 c.1695G>C synonymous_variant 0.4
clpC1 4039022 c.1683A>G synonymous_variant 0.41
clpC1 4039067 c.1638G>C synonymous_variant 0.35
clpC1 4039082 c.1623C>T synonymous_variant 0.34
clpC1 4039085 c.1620A>G synonymous_variant 0.34
clpC1 4039090 c.1615C>T synonymous_variant 0.34
clpC1 4039091 c.1614G>C synonymous_variant 0.34
clpC1 4039097 c.1608G>C synonymous_variant 0.34
clpC1 4039106 c.1599G>C synonymous_variant 0.34
clpC1 4039121 c.1584T>G synonymous_variant 0.3
clpC1 4039133 c.1572C>G synonymous_variant 0.32
clpC1 4039142 c.1563A>G synonymous_variant 0.33
clpC1 4039145 c.1560G>C synonymous_variant 0.34
clpC1 4039169 p.Glu512Asp missense_variant 0.34
clpC1 4039172 c.1533A>G synonymous_variant 0.33
clpC1 4039178 c.1527G>T synonymous_variant 0.34
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.33
clpC1 4039187 c.1518G>T synonymous_variant 0.32
clpC1 4039199 p.Ala502Glu missense_variant 0.33
clpC1 4039217 c.1488G>C synonymous_variant 0.33
clpC1 4039220 c.1485G>C synonymous_variant 0.33
clpC1 4039239 p.Gly489Ala missense_variant 0.29
clpC1 4039274 c.1431G>C synonymous_variant 0.27
clpC1 4039277 c.1428C>G synonymous_variant 0.27
clpC1 4039280 c.1425G>C synonymous_variant 0.26
clpC1 4039286 c.1419T>G synonymous_variant 0.25
clpC1 4039292 c.1413C>T synonymous_variant 0.26
clpC1 4039295 c.1410A>C synonymous_variant 0.26
clpC1 4039298 c.1407T>C synonymous_variant 0.27
clpC1 4039310 c.1395A>G synonymous_variant 0.24
clpC1 4039319 c.1386T>C synonymous_variant 0.23
clpC1 4039327 p.Gln460Lys missense_variant 0.19
clpC1 4039328 c.1377A>C synonymous_variant 0.19
clpC1 4039334 c.1371G>C synonymous_variant 0.19
clpC1 4039337 p.Thr456Gln missense_variant 0.2
clpC1 4039347 p.Arg453Lys missense_variant 0.19
clpC1 4039349 c.1356C>T synonymous_variant 0.19
clpC1 4039360 p.Ser449Arg missense_variant 0.2
clpC1 4039361 c.1344C>A synonymous_variant 0.2
clpC1 4039382 c.1323C>G synonymous_variant 0.23
clpC1 4039391 c.1314T>G synonymous_variant 0.21
clpC1 4039394 c.1309_1311delTCGinsAGC synonymous_variant 0.2
clpC1 4039409 c.1296T>C synonymous_variant 0.23
clpC1 4039412 c.1293T>G synonymous_variant 0.23
clpC1 4039415 p.Glu430Asp missense_variant 0.22
clpC1 4039427 p.Glu426Asp missense_variant 0.22
clpC1 4039430 c.1275T>C synonymous_variant 0.22
clpC1 4039442 c.1263A>G synonymous_variant 0.23
clpC1 4039448 c.1257A>G synonymous_variant 0.21
clpC1 4039454 c.1251A>G synonymous_variant 0.22
clpC1 4039463 c.1242C>G synonymous_variant 0.22
clpC1 4039466 c.1239T>C synonymous_variant 0.21
clpC1 4039469 c.1236T>C synonymous_variant 0.22
clpC1 4039472 c.1233G>T synonymous_variant 0.21
clpC1 4039481 c.1224T>C synonymous_variant 0.21
clpC1 4039484 c.1221T>C synonymous_variant 0.21
clpC1 4039487 c.1218G>A synonymous_variant 0.22
clpC1 4039517 c.1188C>G synonymous_variant 0.27
clpC1 4039553 c.1152C>T synonymous_variant 0.31
clpC1 4039556 c.1149G>C synonymous_variant 0.31
clpC1 4039589 c.1116G>C synonymous_variant 0.33
clpC1 4039598 c.1107C>T synonymous_variant 0.34
clpC1 4039610 c.1095G>C synonymous_variant 0.34
clpC1 4039616 c.1089G>C synonymous_variant 0.35
clpC1 4039628 c.1077C>G synonymous_variant 0.33
clpC1 4039634 p.Glu357Asn missense_variant 0.34
clpC1 4039649 c.1056G>C synonymous_variant 0.36
clpC1 4039652 c.1053G>C synonymous_variant 0.37
clpC1 4039661 c.1044T>C synonymous_variant 0.37
clpC1 4039694 c.1011G>C synonymous_variant 0.38
clpC1 4039700 c.1005C>T synonymous_variant 0.37
clpC1 4039715 c.990G>A synonymous_variant 0.35
clpC1 4039733 c.972G>C synonymous_variant 0.33
clpC1 4039748 c.957G>C synonymous_variant 0.29
clpC1 4039751 c.954A>G synonymous_variant 0.28
clpC1 4039757 c.948A>G synonymous_variant 0.29
clpC1 4039766 c.939T>C synonymous_variant 0.29
clpC1 4039769 c.936C>G synonymous_variant 0.29
clpC1 4039775 c.930G>C synonymous_variant 0.28
clpC1 4039778 c.927A>G synonymous_variant 0.28
clpC1 4039793 c.912C>G synonymous_variant 0.28
clpC1 4039802 c.903G>C synonymous_variant 0.27
clpC1 4039817 c.888A>C synonymous_variant 0.27
clpC1 4039820 c.885T>G synonymous_variant 0.28
clpC1 4039831 c.874T>C synonymous_variant 0.27
clpC1 4039832 c.873C>G synonymous_variant 0.27
clpC1 4039835 c.870C>T synonymous_variant 0.27
clpC1 4039850 c.855T>C synonymous_variant 0.29
clpC1 4039862 c.843C>T synonymous_variant 0.29
clpC1 4039865 c.840T>C synonymous_variant 0.28
clpC1 4039874 c.831C>T synonymous_variant 0.31
clpC1 4039898 c.807C>G synonymous_variant 0.3
clpC1 4039904 c.801A>G synonymous_variant 0.3
clpC1 4039907 c.798G>A synonymous_variant 0.31
clpC1 4039913 c.792C>T synonymous_variant 0.31
clpC1 4039931 c.774T>C synonymous_variant 0.31
clpC1 4039937 c.768G>C synonymous_variant 0.3
clpC1 4039943 c.762G>C synonymous_variant 0.3
clpC1 4039946 c.759A>T synonymous_variant 0.3
clpC1 4039952 c.753T>C synonymous_variant 0.28
clpC1 4039955 c.750G>C synonymous_variant 0.28
clpC1 4039958 c.747G>C synonymous_variant 0.28
clpC1 4039991 c.714G>C synonymous_variant 0.26
clpC1 4040002 p.His235Asn missense_variant 0.23
clpC1 4040003 c.702G>C synonymous_variant 0.23
clpC1 4040015 c.690G>T synonymous_variant 0.23
clpC1 4040021 c.684A>C synonymous_variant 0.22
clpC1 4040024 c.681A>G synonymous_variant 0.21
clpC1 4040027 c.678C>G synonymous_variant 0.21
clpC1 4040030 c.675C>G synonymous_variant 0.21
clpC1 4040033 c.672G>C synonymous_variant 0.21
clpC1 4040042 c.663C>T synonymous_variant 0.2
clpC1 4040048 c.657C>T synonymous_variant 0.19
clpC1 4040087 c.618G>C synonymous_variant 0.17
clpC1 4040090 c.615T>C synonymous_variant 0.17
clpC1 4040093 c.612C>G synonymous_variant 0.17
clpC1 4040381 c.324T>C synonymous_variant 0.12
clpC1 4040387 c.318A>G synonymous_variant 0.13
clpC1 4040393 c.312G>C synonymous_variant 0.12
clpC1 4040411 c.294T>C synonymous_variant 0.14
clpC1 4040423 c.282A>G synonymous_variant 0.14
clpC1 4040426 c.279T>C synonymous_variant 0.14
clpC1 4040431 c.274T>C synonymous_variant 0.14
clpC1 4040441 c.264C>G synonymous_variant 0.14
clpC1 4040444 c.261C>G synonymous_variant 0.14
clpC1 4040450 c.255A>G synonymous_variant 0.14
clpC1 4040459 c.246C>G synonymous_variant 0.13
clpC1 4040465 c.240T>C synonymous_variant 0.15
clpC1 4040474 c.231C>T synonymous_variant 0.16
clpC1 4040477 c.228G>C synonymous_variant 0.15
clpC1 4040480 c.225T>C synonymous_variant 0.15
clpC1 4040486 c.219G>T synonymous_variant 0.14
embC 4240355 p.Ala165Thr missense_variant 1.0
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
aftB 4268528 c.309C>T synonymous_variant 1.0
whiB6 4338471 p.Arg17Ser missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
fbiC 1305494 c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN frameshift_variant&stop_lost&splice_region_variant 1.0
embR 1414586 c.-7_*1594del transcript_ablation 1.0