Rv0668 - p.Ser1100Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
64 Sensitive
3 RR-TB
47 HR-TB
56 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.3 | 90 |
| lineage4 | 4 |
| lineage4.9 | 60 |
| La1.7;lineage4.9 | 9 |
| lineage2.2.1 | 7 |
| lineage4.1.2.1 | 6 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage3 | 3 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.3.3 | 9 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage4.9 | 2 |
| La3;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.3;lineage4.5 | 1 |
| lineage1.1.1;lineage4 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7 | 2 |
| lineage4.8 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| M.canetti;lineage1 | 1 |
| La1.8.1 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1;lineage4.2.1;lineage4.3.3 | 1 |
| lineage4.3.3;lineage4.3.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 224 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR8758889 | MDR-TB | lineage4.3.3 | None | SRR6485032 | Other | lineage4.3.3 | None | SRR3675265 | Other | lineage4 | None | SRR6045053 | Other | lineage4 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR13291561 | Sensitive | lineage4.3.3 | None | SRR29539794 | Sensitive | lineage4.3.3 | None | ERR3276200 | Sensitive | lineage4.1.2.1 | nl | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR11662694 | Other | lineage4.9 | None | ERR4827624 | Sensitive | lineage4.3.3 | None | ERR4769450 | Other | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR23938623 | MDR-TB | lineage4.3.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR6832098 | MDR-TB | lineage4.3.3 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR11069042 | MDR-TB | lineage4.3.3 | None | ERR11082684 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR29539249 | MDR-TB | lineage4.3.3 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR26112234 | Sensitive | lineage4.3.3 | None | ERR13284607 | MDR-TB | lineage4.3.3 | None | ERR2514881 | Sensitive | lineage4.3.3 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR24256322 | MDR-TB | lineage4.3.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR13284912 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR13285152 | MDR-TB | lineage4.3.3 | None | SRR14801311 | Sensitive | lineage4.3.3 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR13285064 | MDR-TB | lineage4.3.3 | None | SRR11033623 | Sensitive | lineage4.3.3 | None | ERR4769452 | Other | lineage4.9 | None | SRR18714885 | MDR-TB | lineage4.3.3 | None | SRR28859965 | HR-TB | lineage4.3.3 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR24256046 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR16370310 | Sensitive | lineage4.3.3 | None | SRR6832703 | HR-TB | lineage4.3.3 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR28351392 | MDR-TB | lineage4.3.3 | None | SRR6045217 | Sensitive | lineage4.9 | None | DRR130092 | MDR-TB | lineage2.2.1 | None | SRR24256276 | MDR-TB | lineage4.3.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR11043977 | MDR-TB | lineage4.3.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR11082441 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR6046046 | Other | lineage4.9 | None | ERR11068191 | Sensitive | lineage4.3.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR28706619 | Sensitive | lineage4.3.3 | None | SRR21686093 | Sensitive | lineage4.3.3 | None | SRR23861716 | HR-TB | lineage4.3.3 | None | ERR13284218 | MDR-TB | lineage4.3.3 | None | ERR13285062 | MDR-TB | lineage4.3.3 | None | SRR29097004 | Other | lineage3 | None | ERR13258505 | MDR-TB | lineage2.2.1 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR067664 | Sensitive | lineage4.3.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR10380007 | HR-TB | lineage4.3.3 | None | ERR11082632 | MDR-TB | lineage4.3.3 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR29539088 | MDR-TB | lineage4.3.3 | None | SRR29538958 | Pre-XDR-TB | lineage4.3.3 | None | ERR2660539 | Other | lineage4.9 | None | ERR13285051 | MDR-TB | lineage4.3.3 | None | SRR11241401 | MDR-TB | lineage4.3.3 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR29053211 | HR-TB | lineage4.3.3 | None | ERR13284099 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR4827458 | HR-TB | lineage4.3.3 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR11083024 | MDR-TB | lineage4.3.3 | None | SRR16089550 | HR-TB | lineage4.3.3 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR11082233 | MDR-TB | lineage4.3.3 | None | SRR29052784 | Sensitive | lineage4.3.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR5865655 | MDR-TB | lineage4.3.3 | None | SRR14782527 | Sensitive | lineage4.3.3 | None | SRR24255964 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29681285 | Sensitive | lineage4.3.3 | None | SRR15368859 | Sensitive | lineage2.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR18715462 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR29052896 | Sensitive | lineage4.3.3 | None | ERR4830049 | HR-TB | lineage4.3.3 | None | ERR4830048 | HR-TB | lineage4.3.3;lineage4.5 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR4830104 | MDR-TB | lineage4.3.3 | tj | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR23340125 | Sensitive | lineage4.3.3 | None | ERR11081800 | MDR-TB | lineage4.3.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR6832264 | MDR-TB | lineage4.3.3 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6832513 | Sensitive | lineage4.3.3 | None | ERR1193792 | MDR-TB | lineage4.3.3 | kz | ERR1193861 | MDR-TB | lineage4.3.3 | ru | ERR1193860 | MDR-TB | lineage4.3.3 | de | ERR1193704 | HR-TB | lineage4.3.3 | us | ERR2513345 | Sensitive | lineage4.3.3 | gb | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046878 | Other | lineage4.9 | None | ERR13292131 | Sensitive | lineage4.3.3 | None | ERR5979529 | Sensitive | lineage4.1.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR21691041 | Sensitive | lineage4.1.2.1 | None | ERR176651 | Other | lineage4.9 | None | SRR21708925 | HR-TB | lineage4.3.3 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR6832851 | HR-TB | lineage4.3.3 | None | ERR13291705 | HR-TB | lineage4.3.3 | None | SRR10380219 | Sensitive | lineage4.3.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR21722059 | Sensitive | lineage4.3.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR29681457 | HR-TB | lineage2.2.1;lineage4.3.3 | None | ERR4830353 | Other | La1.7 | None | ERR4799025 | Other | lineage4.8 | None | SRR26112691 | Sensitive | lineage4.3.3 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR400529 | Other | lineage3 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR13291245 | HR-TB | lineage4.3.3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR11067708 | Sensitive | lineage4.3.3 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | ERR13284900 | MDR-TB | lineage4.3.3 | None | SRR18715461 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR28860101 | Sensitive | lineage4.3.3 | None | ERR5865656 | MDR-TB | lineage4.3.3 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR19303857 | Other | lineage4.3.3 | None | SRR7240033 | Other | La1.8.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR108438 | MDR-TB | lineage2.2.1;lineage4.2.1;lineage4.3.3 | None | ERR13289475 | HR-TB | lineage4.3.3 | None | SRR29052890 | Sensitive | lineage4.3.3 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR5979528 | Sensitive | lineage4.1.2.1 | None | SRR18714967 | MDR-TB | lineage4.3.3;lineage4.3.4.1 | None | SRR6832490 | HR-TB | lineage4.3.3 | None | ERR11082669 | MDR-TB | lineage4.3.3 | None | SRR16088550 | MDR-TB | lineage4.3.3 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR28498472 | Sensitive | lineage4.3.3 | None | ERR11050154 | MDR-TB | lineage4.3.3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR108422 | MDR-TB | lineage2.2.1;lineage4.3.3 | ru | ERR228009 | MDR-TB | lineage4.3.3 | ru | ERR117466 | MDR-TB | lineage4.3.3 | ru | ERR227990 | HR-TB | lineage4.3.3 | ru | ERR229983 | HR-TB | lineage4.3.3 | ru | SRR28239502 | Sensitive | lineage4.3.3 | None | SRR6832050 | HR-TB | lineage4.3.3 | None | SRR24256260 | MDR-TB | lineage4.3.3 | None | SRR3675222 | Other | La1.7 | None | ERR369162 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR21657457 | Sensitive | lineage4.3.3 | None | SRR28706476 | MDR-TB | lineage4.3.3 | None | SRR6832225 | Sensitive | lineage4.3.3 | None |
|---|
