TB-Profiler result

Run: ERR400529
Summary

Run ID: ERR400529

Sample name:

Date: 01-04-2023 03:52:19

Number of reads: 2644039

Percentage reads mapped: 82.81

Strain: lineage3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472035 n.190G>A non_coding_transcript_exon_variant 0.14 streptomycin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.15 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7165 c.-137C>T upstream_gene_variant 0.13
gyrA 7168 c.-134C>G upstream_gene_variant 0.14
gyrA 7198 c.-104C>T upstream_gene_variant 0.16
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8156 c.855T>C synonymous_variant 0.15
gyrA 9033 c.1732C>A synonymous_variant 0.9
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491232 c.450T>C synonymous_variant 0.13
fgd1 491283 p.Asp167Glu missense_variant 0.17
fgd1 491286 c.504G>C synonymous_variant 0.17
fgd1 491316 c.534C>G synonymous_variant 0.15
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 620757 c.867C>T synonymous_variant 0.13
ccsA 620778 c.888T>C synonymous_variant 0.2
ccsA 620787 c.897C>G synonymous_variant 0.22
ccsA 620793 c.903G>C synonymous_variant 0.2
ccsA 620808 c.918T>C synonymous_variant 0.2
ccsA 620832 c.942C>G synonymous_variant 0.13
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 760112 c.306T>C synonymous_variant 0.14
rpoB 760118 c.312T>C synonymous_variant 0.17
rpoB 760121 c.315T>C synonymous_variant 0.17
rpoB 760130 p.Asp108Glu missense_variant 0.19
rpoB 760139 c.333A>G synonymous_variant 0.18
rpoB 760142 c.336C>G synonymous_variant 0.17
rpoB 760184 c.378A>G synonymous_variant 0.13
rpoB 760298 c.492G>C synonymous_variant 0.14
rpoB 760313 c.507G>C synonymous_variant 0.13
rpoB 760328 c.522G>C synonymous_variant 0.15
rpoB 760331 c.525G>C synonymous_variant 0.16
rpoB 760376 p.Asp190Glu missense_variant 0.14
rpoB 760406 c.600G>C synonymous_variant 0.14
rpoB 760424 c.618C>G synonymous_variant 0.16
rpoB 760451 c.645C>G synonymous_variant 0.13
rpoB 760463 c.657C>T synonymous_variant 0.14
rpoB 760611 c.805T>C synonymous_variant 0.18
rpoB 760643 c.837G>A synonymous_variant 0.16
rpoB 760646 c.840C>G synonymous_variant 0.16
rpoB 760655 c.849A>G synonymous_variant 0.14
rpoB 760661 c.855A>C synonymous_variant 0.14
rpoB 760670 c.864G>C synonymous_variant 0.15
rpoB 760674 c.868T>C synonymous_variant 0.14
rpoB 760679 c.873A>G synonymous_variant 0.14
rpoB 760683 c.877T>C synonymous_variant 0.14
rpoB 761057 c.1251G>C synonymous_variant 0.15
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoB 762813 p.Met1003Val missense_variant 0.16
rpoC 762818 c.-552C>G upstream_gene_variant 0.16
rpoC 762857 c.-513C>G upstream_gene_variant 0.14
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763807 c.438T>C synonymous_variant 0.15
rpoC 763816 c.447C>G synonymous_variant 0.15
rpoC 763822 c.453C>G synonymous_variant 0.16
rpoC 763825 c.456G>A synonymous_variant 0.15
rpoC 763828 c.459C>G synonymous_variant 0.16
rpoC 763836 p.Ala156Val missense_variant 0.15
rpoC 764188 c.819A>G synonymous_variant 0.17
rpoC 764195 p.Ser276Asn missense_variant 0.16
rpoC 764203 c.834G>T synonymous_variant 0.16
rpoC 764206 p.Asp279Glu missense_variant 0.16
rpoC 764209 c.840C>T synonymous_variant 0.16
rpoC 764217 p.Asn283Ser missense_variant 0.17
rpoC 764227 c.858G>C synonymous_variant 0.17
rpoC 764245 c.876C>T synonymous_variant 0.18
rpoC 764359 c.990C>T synonymous_variant 0.13
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.13
rpoC 764428 c.1059G>C synonymous_variant 0.16
rpoC 764431 c.1062G>C synonymous_variant 0.17
rpoC 764434 c.1065A>G synonymous_variant 0.17
rpoC 764446 c.1077T>C synonymous_variant 0.14
rpoC 764452 c.1083T>C synonymous_variant 0.13
rpoC 764458 c.1089G>C synonymous_variant 0.15
rpoC 764461 c.1092A>G synonymous_variant 0.14
rpoC 764497 c.1128A>G synonymous_variant 0.19
rpoC 764503 c.1134G>C synonymous_variant 0.17
rpoC 764521 c.1152T>C synonymous_variant 0.15
rpoC 764527 c.1158C>T synonymous_variant 0.17
rpoC 764536 c.1167G>C synonymous_variant 0.18
rpoC 764548 c.1179G>A synonymous_variant 0.18
rpoC 764566 c.1197C>G synonymous_variant 0.14
rpoC 764716 c.1347G>C synonymous_variant 0.22
rpoC 765356 p.Met663Val missense_variant 0.12
rpoC 765370 c.2001G>C synonymous_variant 0.15
rpoC 765383 p.Met672Leu missense_variant 0.16
rpoC 765394 c.2025G>A synonymous_variant 0.14
rpoC 765409 c.2040T>C synonymous_variant 0.16
rpoC 765412 c.2043T>C synonymous_variant 0.16
rpoC 765421 c.2052C>G synonymous_variant 0.18
rpoC 765478 c.2109T>C synonymous_variant 0.13
rpoC 765547 c.2178C>A synonymous_variant 0.14
rpoC 765556 c.2187G>C synonymous_variant 0.14
rpoC 765619 c.2250G>A synonymous_variant 0.13
rpoC 765676 c.2307G>A synonymous_variant 0.14
rpoC 765688 c.2319G>C synonymous_variant 0.16
rpoC 765694 c.2325G>C synonymous_variant 0.16
rpoC 765700 c.2331T>C synonymous_variant 0.13
rpoC 765734 c.2365T>C synonymous_variant 0.14
rpoC 765811 c.2442T>C synonymous_variant 0.13
rpoC 765865 c.2496C>T synonymous_variant 0.15
rpoC 765871 c.2502T>C synonymous_variant 0.16
rpoC 765875 p.Val836Ile missense_variant 0.18
rpoC 765883 c.2514C>G synonymous_variant 0.15
rpoC 765886 c.2517C>G synonymous_variant 0.15
rpoC 765892 c.2523T>C synonymous_variant 0.15
rpoC 765946 c.2577C>T synonymous_variant 0.15
rpoC 766342 c.2973C>T synonymous_variant 0.17
rpoC 766345 c.2976T>C synonymous_variant 0.16
rpoC 766348 c.2979A>G synonymous_variant 0.16
rpoC 766480 c.3111C>G synonymous_variant 0.13
rpoC 766484 p.Val1039Ile missense_variant 0.13
rpoC 766495 c.3126C>G synonymous_variant 0.18
rpoC 766522 c.3153C>T synonymous_variant 0.19
rpoC 766525 c.3156G>T synonymous_variant 0.2
rpoC 766528 c.3159T>C synonymous_variant 0.19
rpoC 766549 c.3180G>C synonymous_variant 0.2
rpoC 766558 c.3189G>A synonymous_variant 0.2
rpoC 766564 c.3195C>T synonymous_variant 0.15
rpoC 766565 p.Ile1066Val missense_variant 0.15
rpoC 766573 c.3204T>C synonymous_variant 0.17
rpoC 766585 c.3216T>C synonymous_variant 0.21
rpoC 766607 p.Ile1080Leu missense_variant 0.17
rpoC 766618 c.3249G>T synonymous_variant 0.15
rpoC 766624 c.3255G>C synonymous_variant 0.14
rpoC 766645 c.3276A>G synonymous_variant 0.15
rpoC 766657 c.3288A>G synonymous_variant 0.15
rpoC 766667 p.Ser1100Ala missense_variant 0.18
rpoC 766672 c.3303T>C synonymous_variant 0.17
rpoC 766726 c.3357T>C synonymous_variant 0.19
rpoC 766738 c.3369G>C synonymous_variant 0.21
rpoC 766750 c.3381C>G synonymous_variant 0.21
rpoC 766753 c.3384C>T synonymous_variant 0.23
rpoC 766765 c.3396A>C synonymous_variant 0.23
rpoC 766774 c.3405T>C synonymous_variant 0.21
rpoC 766798 c.3429C>T synonymous_variant 0.16
rpoC 766804 c.3435A>G synonymous_variant 0.16
rpoC 766843 c.3474T>G synonymous_variant 0.14
rpoC 766894 c.3525T>C synonymous_variant 0.13
rpoC 766900 c.3531T>C synonymous_variant 0.13
rpoC 766960 c.3591C>T synonymous_variant 0.13
rpoC 766972 c.3603G>C synonymous_variant 0.14
rpoC 766996 c.3627C>T synonymous_variant 0.15
rpoC 767059 c.3690T>G synonymous_variant 0.13
rpoC 767098 c.3729T>C synonymous_variant 0.13
rpoC 767119 c.3750A>G synonymous_variant 0.13
rpoC 767134 c.3765C>A synonymous_variant 0.15
rpoC 767152 c.3783T>G synonymous_variant 0.19
rpoC 767155 c.3786C>G synonymous_variant 0.17
rpoC 767167 c.3798C>T synonymous_variant 0.19
rpoC 767180 p.Ala1271Gln missense_variant 0.17
rpoC 767191 c.3822C>G synonymous_variant 0.17
rpoC 767206 c.3837C>G synonymous_variant 0.14
rpoC 767209 c.3840T>C synonymous_variant 0.14
rpoC 767212 c.3843G>C synonymous_variant 0.15
rpoC 767233 c.3864T>C synonymous_variant 0.16
rpoC 767239 c.3870T>C synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781649 c.90T>C synonymous_variant 0.14
rpsL 781655 c.96T>C synonymous_variant 0.13
rpsL 781658 c.99A>G synonymous_variant 0.13
rpsL 781703 c.144G>T synonymous_variant 0.14
rpsL 781929 p.Gly124Ser missense_variant 0.13
rplC 800612 c.-197A>G upstream_gene_variant 0.15
rplC 800690 c.-119C>G upstream_gene_variant 0.18
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.15
rplC 800715 c.-94A>C upstream_gene_variant 0.15
rplC 800720 c.-89T>C upstream_gene_variant 0.17
rplC 800723 c.-86C>G upstream_gene_variant 0.16
rplC 800747 c.-62C>G upstream_gene_variant 0.22
rplC 800759 c.-50C>T upstream_gene_variant 0.2
rplC 800771 c.-38C>T upstream_gene_variant 0.19
rplC 800829 c.21C>G synonymous_variant 0.13
rplC 800844 c.36T>C synonymous_variant 0.13
fbiC 1303545 c.615A>G synonymous_variant 0.15
fbiC 1303584 c.654C>G synonymous_variant 0.2
fbiC 1303590 c.660A>G synonymous_variant 0.2
fbiC 1303614 c.684C>G synonymous_variant 0.2
fbiC 1303623 c.693C>T synonymous_variant 0.18
fbiC 1303632 c.702T>G synonymous_variant 0.16
fbiC 1303641 c.711C>T synonymous_variant 0.16
fbiC 1303650 c.720G>C synonymous_variant 0.15
fbiC 1303654 c.724C>T synonymous_variant 0.18
fbiC 1303661 p.Val244Ala missense_variant 0.15
fbiC 1303695 c.765T>C synonymous_variant 0.16
fbiC 1303704 c.774T>G synonymous_variant 0.15
fbiC 1303713 c.783C>G synonymous_variant 0.15
fbiC 1303722 c.792C>T synonymous_variant 0.18
fbiC 1303731 c.801A>G synonymous_variant 0.16
fbiC 1303732 p.Ser268Ala missense_variant 0.16
fbiC 1303740 c.810C>G synonymous_variant 0.15
fbiC 1303746 c.816T>C synonymous_variant 0.15
fbiC 1303752 c.822A>G synonymous_variant 0.14
fbiC 1303785 c.855G>C synonymous_variant 0.16
fbiC 1303791 c.861C>T synonymous_variant 0.16
fbiC 1303794 c.864A>G synonymous_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.13
rrs 1471984 n.139T>A non_coding_transcript_exon_variant 0.15
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.15
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.15
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.14
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.14
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.15
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.16
rrs 1472314 n.469A>G non_coding_transcript_exon_variant 0.16
rrs 1472315 n.470T>C non_coding_transcript_exon_variant 0.16
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.16
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.15
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.12
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.13
rrl 1473831 n.174G>A non_coding_transcript_exon_variant 0.13
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 0.16
rrl 1474029 n.372G>A non_coding_transcript_exon_variant 0.14
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.15
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.17
rrl 1474716 n.1059A>C non_coding_transcript_exon_variant 0.22
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.19
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.13
rrl 1475061 n.1404C>A non_coding_transcript_exon_variant 0.13
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.13
rrl 1475337 n.1680C>T non_coding_transcript_exon_variant 0.16
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.25
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.26
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.23
rrl 1475403 n.1746T>A non_coding_transcript_exon_variant 0.21
rrl 1475404 n.1747A>C non_coding_transcript_exon_variant 0.21
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.26
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.25
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.24
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.24
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.31
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.23
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.14
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.14
rrl 1475619 n.1962C>T non_coding_transcript_exon_variant 0.2
rrl 1475622 n.1965G>T non_coding_transcript_exon_variant 0.2
rrl 1475635 n.1978G>A non_coding_transcript_exon_variant 0.17
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 0.18
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.18
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.13
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.18
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.18
rrl 1475988 n.2331A>T non_coding_transcript_exon_variant 0.2
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.14
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.15
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.15
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.13
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.14
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.15
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.15
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.15
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.15
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.16
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.2
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.2
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.16
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.17
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.18
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.19
inhA 1673991 c.-211C>T upstream_gene_variant 0.14
inhA 1674015 c.-187C>G upstream_gene_variant 0.13
rpsA 1833664 c.123C>A synonymous_variant 0.13
rpsA 1833802 c.261A>G synonymous_variant 0.18
rpsA 1833811 c.270G>T synonymous_variant 0.17
rpsA 1833817 c.276C>G synonymous_variant 0.18
rpsA 1833820 c.279G>A synonymous_variant 0.19
rpsA 1833856 c.315A>G synonymous_variant 0.14
rpsA 1833859 c.318C>T synonymous_variant 0.14
rpsA 1834099 c.558C>G synonymous_variant 0.12
rpsA 1834102 c.561T>C synonymous_variant 0.13
rpsA 1834123 c.582C>G synonymous_variant 0.15
rpsA 1834189 c.648G>C synonymous_variant 0.14
rpsA 1834249 c.708T>C synonymous_variant 0.13
rpsA 1834264 c.723G>C synonymous_variant 0.15
rpsA 1834297 c.756C>G synonymous_variant 0.18
rpsA 1834303 c.762T>G synonymous_variant 0.16
rpsA 1834306 c.765T>C synonymous_variant 0.18
rpsA 1834348 c.807T>C synonymous_variant 0.2
rpsA 1834366 c.825A>G synonymous_variant 0.13
rpsA 1834369 c.828C>G synonymous_variant 0.15
rpsA 1834396 c.855G>C synonymous_variant 0.17
rpsA 1834411 c.870T>C synonymous_variant 0.16
rpsA 1834451 c.910T>C synonymous_variant 0.21
rpsA 1834456 c.915T>G synonymous_variant 0.2
rpsA 1834459 c.918G>C synonymous_variant 0.21
rpsA 1834468 c.927A>G synonymous_variant 0.21
rpsA 1834477 c.936C>A synonymous_variant 0.19
rpsA 1834489 c.948T>C synonymous_variant 0.17
rpsA 1834499 c.958C>T synonymous_variant 0.15
rpsA 1834507 c.966C>T synonymous_variant 0.13
rpsA 1834528 c.987T>C synonymous_variant 0.13
rpsA 1834534 c.993C>G synonymous_variant 0.14
rpsA 1834546 c.1005T>C synonymous_variant 0.15
rpsA 1834606 c.1065C>T synonymous_variant 0.14
rpsA 1834609 c.1068T>C synonymous_variant 0.13
rpsA 1834654 c.1113G>A synonymous_variant 0.15
rpsA 1834666 c.1125G>C synonymous_variant 0.16
rpsA 1834669 c.1128G>C synonymous_variant 0.16
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169320 p.Leu431Phe missense_variant 0.17
Rv1979c 2222460 c.704delT frameshift_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
kasA 2518795 c.681C>G synonymous_variant 0.13
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
thyA 3073806 c.666C>G synonymous_variant 0.14
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339567 c.450A>G synonymous_variant 0.14
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiB 3640560 c.-975G>A upstream_gene_variant 0.96
rpoA 3877569 c.939G>C synonymous_variant 0.13
rpoA 3877587 c.921A>G synonymous_variant 0.14
rpoA 3877656 c.852T>C synonymous_variant 0.14
rpoA 3878070 c.438T>C synonymous_variant 0.13
rpoA 3878082 c.426T>C synonymous_variant 0.15
rpoA 3878103 c.405A>G synonymous_variant 0.16
rpoA 3878106 c.402G>C synonymous_variant 0.16
rpoA 3878118 c.390T>C synonymous_variant 0.18
rpoA 3878127 c.381G>C synonymous_variant 0.2
rpoA 3878130 c.378C>G synonymous_variant 0.2
rpoA 3878141 c.365_366delGC frameshift_variant 0.19
rpoA 3878145 c.362_363insGT frameshift_variant 0.2
rpoA 3878283 p.Glu75Asp missense_variant 0.13
rpoA 3878295 c.213A>G synonymous_variant 0.17
rpoA 3878298 c.210A>G synonymous_variant 0.14
rpoA 3878370 c.138T>C synonymous_variant 0.16
rpoA 3878385 c.123C>G synonymous_variant 0.17
rpoA 3878406 c.102G>T synonymous_variant 0.21
rpoA 3878415 c.93C>T synonymous_variant 0.24
rpoA 3878442 c.66G>C synonymous_variant 0.16
rpoA 3878454 c.54A>G synonymous_variant 0.16
rpoA 3878458 p.Asn17Ser missense_variant 0.13
rpoA 3878460 c.48C>T synonymous_variant 0.12
clpC1 4038236 p.Thr823Ala missense_variant 0.15
clpC1 4038239 c.2466T>A synonymous_variant 0.17
clpC1 4038266 c.2439C>T synonymous_variant 0.15
clpC1 4038270 p.Pro812Ser missense_variant 0.14
clpC1 4038272 c.2433T>C synonymous_variant 0.14
clpC1 4038275 c.2430A>G synonymous_variant 0.17
clpC1 4038278 c.2427T>C synonymous_variant 0.17
clpC1 4038293 c.2412G>C synonymous_variant 0.14
clpC1 4038761 c.1944C>T synonymous_variant 0.13
clpC1 4038773 c.1932T>C synonymous_variant 0.15
clpC1 4038790 c.1915C>T synonymous_variant 0.19
clpC1 4038812 c.1893T>C synonymous_variant 0.22
clpC1 4038815 c.1890G>C synonymous_variant 0.22
clpC1 4038838 c.1867C>T synonymous_variant 0.17
clpC1 4038839 c.1866G>C synonymous_variant 0.18
clpC1 4038845 c.1860G>C synonymous_variant 0.17
clpC1 4038857 c.1848C>A synonymous_variant 0.16
clpC1 4038997 c.1708T>C synonymous_variant 0.16
clpC1 4039010 c.1695G>C synonymous_variant 0.17
clpC1 4039076 c.1629G>A synonymous_variant 0.21
clpC1 4039112 c.1593C>G synonymous_variant 0.12
clpC1 4039121 c.1584T>C synonymous_variant 0.14
clpC1 4039124 c.1581C>G synonymous_variant 0.14
clpC1 4039140 p.Glu522Val missense_variant 0.15
clpC1 4039142 c.1563A>G synonymous_variant 0.15
clpC1 4039145 c.1560G>C synonymous_variant 0.16
clpC1 4039370 c.1335G>A synonymous_variant 0.15
clpC1 4039382 c.1323C>T synonymous_variant 0.15
clpC1 4039391 c.1314T>G synonymous_variant 0.13
clpC1 4039430 c.1275T>C synonymous_variant 0.16
clpC1 4039439 c.1266C>T synonymous_variant 0.17
clpC1 4039442 c.1263A>G synonymous_variant 0.18
clpC1 4039463 c.1242C>G synonymous_variant 0.25
clpC1 4039466 c.1239T>C synonymous_variant 0.25
clpC1 4039469 c.1236T>C synonymous_variant 0.27
clpC1 4039481 c.1224T>C synonymous_variant 0.3
clpC1 4039484 c.1221T>C synonymous_variant 0.29
clpC1 4039487 c.1218G>C synonymous_variant 0.27
clpC1 4039517 c.1188C>G synonymous_variant 0.26
clpC1 4039661 c.1044T>C synonymous_variant 0.25
clpC1 4039691 c.1014G>C synonymous_variant 0.25
clpC1 4039724 c.981A>G synonymous_variant 0.15
clpC1 4039733 c.972G>C synonymous_variant 0.13
clpC1 4039865 c.840T>C synonymous_variant 0.13
clpC1 4039931 c.774T>C synonymous_variant 0.15
clpC1 4039937 c.768G>C synonymous_variant 0.15
clpC1 4039952 c.753T>C synonymous_variant 0.16
clpC1 4039958 c.747G>C synonymous_variant 0.17
clpC1 4039985 c.720G>A synonymous_variant 0.19
clpC1 4040009 c.696C>G synonymous_variant 0.2
clpC1 4040015 c.690G>T synonymous_variant 0.19
clpC1 4040018 c.687G>C synonymous_variant 0.18
clpC1 4040030 c.675C>G synonymous_variant 0.2
clpC1 4040033 c.672G>C synonymous_variant 0.19
embC 4240765 c.903C>G synonymous_variant 0.15
embC 4240777 c.915G>A synonymous_variant 0.16
embC 4240780 c.918T>C synonymous_variant 0.16
embC 4240783 c.921G>C synonymous_variant 0.16
embC 4240789 c.927T>C synonymous_variant 0.17
embC 4240795 c.933C>G synonymous_variant 0.18
embC 4240819 c.957A>G synonymous_variant 0.17
embC 4240831 c.969T>G synonymous_variant 0.17
embC 4242075 p.Arg738Gln missense_variant 0.97
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245128 c.1896G>C synonymous_variant 0.14
embA 4245137 c.1905T>C synonymous_variant 0.14
embA 4245167 c.1935G>C synonymous_variant 0.13
embB 4248185 c.1672T>C synonymous_variant 0.13
embB 4248305 c.1792C>T synonymous_variant 0.21
embB 4248316 c.1803C>G synonymous_variant 0.21
embB 4248319 c.1806A>G synonymous_variant 0.18
embB 4248322 c.1809G>T synonymous_variant 0.18
embB 4248334 c.1821C>G synonymous_variant 0.18
embB 4248338 c.1825C>T synonymous_variant 0.17
embB 4249276 c.2763A>C synonymous_variant 0.16
embB 4249282 c.2769A>C synonymous_variant 0.15
embB 4249321 c.2808A>G synonymous_variant 0.19
embB 4249323 p.Ala937Asp missense_variant 0.19
embB 4249339 c.2826T>C synonymous_variant 0.17
embB 4249369 c.2856T>C synonymous_variant 0.16
embB 4249376 c.2863C>T synonymous_variant 0.18
embB 4249381 c.2868A>G synonymous_variant 0.19
embB 4249396 c.2883C>T synonymous_variant 0.18
embB 4249429 c.2916C>G synonymous_variant 0.14
ubiA 4269903 c.-70C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0