EBG00000313339 - n.242A>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
4 RR-TB
33 HR-TB
10 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 24 |
| lineage4.3.4.1 | 3 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La3;lineage4.9 | 6 |
| M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage2.2.1 | 7 |
| La1.7.1 | 1 |
| lineage4.3.3;lineage4.8 | 2 |
| La1.7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| La1.6;La3;lineage4.9 | 1 |
| lineage4.9.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage6.1.1 | 2 |
| lineage3 | 3 |
| 2 | |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.6.1.1 | 3 |
| lineage4.9;lineage6.3 | 2 |
| lineage3.1.2.1 | 1 |
| La1.8.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4 | 1 |
| lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 95 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4819241 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR176557 | Sensitive | lineage4.3.4.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR1815538 | Other | La1.7.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR400529 | Other | lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR6358991 | HR-TB | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR161037 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR176751 | Other | lineage4.9 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4818831 | Other | lineage3 | None | SRR29096150 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR987722 | MDR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None |
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