TB-Profiler result

Run: ERR9786346
Summary

Run ID: ERR9786346

Sample name:

Date: 02-04-2023 12:20:26

Number of reads: 1563026

Percentage reads mapped: 87.42

Strain: lineage4.3.4.2

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3 Euro-American (LAM) mainly-LAM None 1.0
lineage4.3.4 Euro-American (LAM) LAM RD174 1.0
lineage4.3.4.2 Euro-American (LAM) LAM1;LAM4;LAM11 RD174 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7457 c.156T>C synonymous_variant 0.12
gyrA 7475 c.174A>C synonymous_variant 0.13
gyrA 7511 c.210C>T synonymous_variant 0.14
gyrA 7514 c.213C>G synonymous_variant 0.14
gyrA 7517 c.216G>A synonymous_variant 0.15
gyrA 7526 c.225G>C synonymous_variant 0.15
gyrA 7529 c.228G>C synonymous_variant 0.15
gyrA 7532 c.231T>G synonymous_variant 0.15
gyrA 7541 c.240C>G synonymous_variant 0.15
gyrA 7568 c.267C>T synonymous_variant 0.15
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.13
gyrA 7595 c.294C>G synonymous_variant 0.14
gyrA 7637 c.336C>G synonymous_variant 0.13
gyrA 7658 c.357A>G synonymous_variant 0.14
gyrA 7664 c.363T>C synonymous_variant 0.13
gyrA 7670 c.369A>G synonymous_variant 0.14
gyrA 7676 c.375G>C synonymous_variant 0.14
gyrA 7679 c.378G>C synonymous_variant 0.15
gyrA 8828 c.1527T>C synonymous_variant 0.14
gyrA 8829 c.1528T>C synonymous_variant 0.14
gyrA 8852 c.1551T>C synonymous_variant 0.14
gyrA 8858 c.1557T>G synonymous_variant 0.13
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9345 c.2044A>C synonymous_variant 0.12
gyrA 9356 c.2055G>A synonymous_variant 0.13
gyrA 9374 c.2073G>C synonymous_variant 0.13
gyrA 9377 c.2076A>G synonymous_variant 0.13
gyrA 9383 c.2082T>C synonymous_variant 0.13
gyrA 9395 c.2094G>C synonymous_variant 0.12
gyrA 9398 c.2097T>C synonymous_variant 0.12
fgd1 491037 c.255C>G synonymous_variant 0.14
fgd1 491043 c.261T>G synonymous_variant 0.14
fgd1 491049 c.267T>G synonymous_variant 0.13
fgd1 491083 p.Val101Ile missense_variant 0.12
fgd1 491091 c.309T>C synonymous_variant 0.14
fgd1 491094 c.312C>G synonymous_variant 0.14
fgd1 491106 c.324T>A synonymous_variant 0.14
fgd1 491115 c.333G>C synonymous_variant 0.14
fgd1 491121 c.339A>G synonymous_variant 0.14
fgd1 491144 p.Ala121Asp missense_variant 0.13
fgd1 491181 c.399T>C synonymous_variant 0.15
mshA 575466 p.Ala40Val missense_variant 1.0
rpoB 760430 c.624T>C synonymous_variant 0.14
rpoB 760475 c.669A>G synonymous_variant 0.16
rpoB 760478 c.672C>T synonymous_variant 0.16
rpoB 760481 c.675G>C synonymous_variant 0.16
rpoB 760484 c.678A>G synonymous_variant 0.15
rpoB 760487 c.681G>C synonymous_variant 0.16
rpoB 760502 c.696C>G synonymous_variant 0.18
rpoB 760522 p.Ser239Asn missense_variant 0.14
rpoB 760533 p.Val243Ile missense_variant 0.12
rpoB 760946 c.1140A>G synonymous_variant 0.14
rpoB 762065 c.2259T>C synonymous_variant 0.13
rpoB 762083 c.2277T>C synonymous_variant 0.13
rpoB 762101 c.2295C>G synonymous_variant 0.14
rpoB 762114 p.Ile770Val missense_variant 0.13
rpoB 762122 c.2316C>T synonymous_variant 0.14
rpoB 762131 c.2325C>G synonymous_variant 0.16
rpoB 762140 c.2334G>C synonymous_variant 0.15
rpoB 762143 c.2337T>C synonymous_variant 0.15
rpoB 762149 c.2343G>C synonymous_variant 0.15
rpoB 762158 c.2352G>C synonymous_variant 0.15
rpoB 762167 c.2361T>C synonymous_variant 0.14
rpoB 762176 c.2370T>C synonymous_variant 0.15
rpoB 762233 c.2427G>C synonymous_variant 0.16
rpoB 762257 c.2451C>G synonymous_variant 0.16
rpoB 762275 c.2469C>G synonymous_variant 0.17
rpoB 762284 c.2478G>C synonymous_variant 0.17
rpoB 762293 c.2487T>G synonymous_variant 0.16
rpoB 762314 c.2508C>T synonymous_variant 0.15
rpoB 762317 c.2511A>G synonymous_variant 0.16
rpoB 762338 c.2532T>C synonymous_variant 0.19
rpoB 762341 c.2535G>T synonymous_variant 0.19
rpoB 762347 c.2541T>C synonymous_variant 0.19
rpoB 762362 p.Glu852Asp missense_variant 0.17
rpoB 762369 c.2563T>C synonymous_variant 0.16
rpoC 762374 c.-996G>C upstream_gene_variant 0.16
rpoC 762380 c.-990T>C upstream_gene_variant 0.16
rpoC 762390 c.-980C>T upstream_gene_variant 0.17
rpoC 762395 c.-975G>C upstream_gene_variant 0.17
rpoC 762398 c.-972T>C upstream_gene_variant 0.17
rpoC 762401 c.-969G>C upstream_gene_variant 0.16
rpoC 762404 c.-966T>C upstream_gene_variant 0.16
rpoC 762407 c.-963G>C upstream_gene_variant 0.18
rpoC 762410 c.-960T>G upstream_gene_variant 0.18
rpoC 762416 c.-954A>G upstream_gene_variant 0.18
rpoC 762434 c.-936T>C upstream_gene_variant 0.17
rpoC 762449 c.-921C>A upstream_gene_variant 0.15
rpoC 762452 c.-918G>C upstream_gene_variant 0.13
rpoC 762929 c.-441G>C upstream_gene_variant 0.14
rpoC 762995 c.-375G>C upstream_gene_variant 0.21
rpoC 763004 c.-366G>A upstream_gene_variant 0.21
rpoC 763007 c.-363C>T upstream_gene_variant 0.21
rpoC 763028 c.-342T>C upstream_gene_variant 0.17
rpoC 763031 c.-339T>G upstream_gene_variant 0.17
rpoC 763034 c.-336C>G upstream_gene_variant 0.16
rpoC 763040 c.-330C>G upstream_gene_variant 0.15
rpoC 763070 c.-300T>C upstream_gene_variant 0.17
rpoC 763085 c.-285C>G upstream_gene_variant 0.16
rpoC 763115 c.-255T>C upstream_gene_variant 0.15
rpoC 763127 c.-243G>C upstream_gene_variant 0.15
rpoC 763133 c.-237G>C upstream_gene_variant 0.12
rpoC 763139 c.-231C>T upstream_gene_variant 0.12
rpoC 763528 c.159G>A synonymous_variant 0.18
rpoC 763546 c.177A>G synonymous_variant 0.21
rpoC 763570 c.201G>C synonymous_variant 0.22
rpoC 763573 c.204G>C synonymous_variant 0.22
rpoC 763594 c.225C>T synonymous_variant 0.2
rpoC 763660 c.291T>G synonymous_variant 0.19
rpoC 763675 c.306C>G synonymous_variant 0.17
rpoC 763702 c.333C>G synonymous_variant 0.14
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.13
rpoC 763711 c.342G>C synonymous_variant 0.14
rpoC 763717 c.348T>C synonymous_variant 0.14
rpoC 763723 c.354G>C synonymous_variant 0.15
rpoC 763732 c.363C>G synonymous_variant 0.18
rpoC 763735 c.366G>C synonymous_variant 0.18
rpoC 763741 c.372C>T synonymous_variant 0.18
rpoC 763744 c.375G>C synonymous_variant 0.18
rpoC 763765 c.396T>C synonymous_variant 0.21
rpoC 763768 c.399C>T synonymous_variant 0.21
rpoC 763774 c.405G>C synonymous_variant 0.22
rpoC 763781 p.Ser138Glu missense_variant 0.2
rpoC 763807 c.438T>C synonymous_variant 0.2
rpoC 763813 c.444C>G synonymous_variant 0.16
rpoC 763816 c.447C>G synonymous_variant 0.16
rpoC 763822 c.453C>G synonymous_variant 0.16
rpoC 763831 c.462A>G synonymous_variant 0.15
rpoC 763837 c.468G>C synonymous_variant 0.16
rpoC 763840 c.471G>C synonymous_variant 0.14
rpoC 763849 c.480G>A synonymous_variant 0.13
rpoC 763910 p.Leu181Met missense_variant 0.12
rpoC 763933 c.564C>T synonymous_variant 0.12
rpoC 763940 p.Ala191Ser missense_variant 0.13
rpoC 763945 c.576T>C synonymous_variant 0.13
rpoC 763947 p.Ala193Val missense_variant 0.13
rpoC 763951 c.582G>C synonymous_variant 0.13
rpoC 763960 c.591T>G synonymous_variant 0.13
rpoC 764098 c.729A>G synonymous_variant 0.13
rpoC 764101 c.732C>G synonymous_variant 0.13
rpoC 764103 p.Val245Glu missense_variant 0.13
rpoC 764131 c.762T>C synonymous_variant 0.16
rpoC 764491 c.1122G>T synonymous_variant 0.12
rpoC 764497 c.1128A>G synonymous_variant 0.13
rpoC 764521 c.1152T>C synonymous_variant 0.14
rpoC 764527 c.1158C>T synonymous_variant 0.14
rpoC 764536 c.1167G>T synonymous_variant 0.14
rpoC 764539 c.1170C>G synonymous_variant 0.14
rpoC 764575 c.1206T>G synonymous_variant 0.17
rpoC 764578 c.1209C>G synonymous_variant 0.16
rpoC 764585 c.1216_1218delCTCinsTTG synonymous_variant 0.14
rpoC 764611 c.1242G>T synonymous_variant 0.16
rpoC 764650 c.1281G>T synonymous_variant 0.15
rpoC 764686 c.1317C>T synonymous_variant 0.15
rpoC 764713 c.1344G>A synonymous_variant 0.13
rpoC 764803 c.1434C>T synonymous_variant 0.13
rpoC 764809 c.1440C>T synonymous_variant 0.13
rpoC 764812 c.1443C>G synonymous_variant 0.13
rpoC 764824 c.1455T>C synonymous_variant 0.13
rpoC 764995 c.1626C>G synonymous_variant 0.97
rpoC 766951 c.3582G>T synonymous_variant 0.12
rpoC 766963 c.3594T>C synonymous_variant 0.15
rpoC 766978 c.3609C>T synonymous_variant 0.14
rpoC 766981 c.3612T>C synonymous_variant 0.13
rpoC 766996 c.3627C>T synonymous_variant 0.14
rpoC 767002 c.3633G>C synonymous_variant 0.13
rpoC 767020 c.3651C>T synonymous_variant 0.12
rpoC 767023 c.3654C>T synonymous_variant 0.13
rpoC 767098 c.3729T>C synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800693 c.-116A>C upstream_gene_variant 0.12
rplC 800702 c.-107G>A upstream_gene_variant 0.13
rplC 800703 c.-106T>C upstream_gene_variant 0.14
rplC 800715 c.-94A>C upstream_gene_variant 0.15
rplC 800720 c.-89T>C upstream_gene_variant 0.14
rplC 800723 c.-86C>G upstream_gene_variant 0.15
rplC 800735 c.-74C>G upstream_gene_variant 0.14
rplC 800738 c.-71T>C upstream_gene_variant 0.14
rplC 800747 c.-62C>G upstream_gene_variant 0.13
rplC 800762 c.-47T>G upstream_gene_variant 0.13
rplC 800774 c.-35C>T upstream_gene_variant 0.12
rplC 800815 c.7C>A synonymous_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 0.15
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.14
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.14
rrs 1472297 n.453_454delGT non_coding_transcript_exon_variant 0.14
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.18
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.18
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.16
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.18
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.17
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.17
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.25
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.19
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.18
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.18
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.13
rrs 1473289 n.1444T>G non_coding_transcript_exon_variant 0.13
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.14
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.14
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.16
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.16
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.16
rrl 1473807 n.150T>C non_coding_transcript_exon_variant 0.16
rrl 1473811 n.154C>A non_coding_transcript_exon_variant 0.16
rrl 1473813 n.156C>G non_coding_transcript_exon_variant 0.17
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.17
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.17
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.17
rrl 1473822 n.165A>G non_coding_transcript_exon_variant 0.17
rrl 1473828 n.171G>C non_coding_transcript_exon_variant 0.18
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.18
rrl 1473830 n.173T>G non_coding_transcript_exon_variant 0.2
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.2
rrl 1473833 n.176G>T non_coding_transcript_exon_variant 0.19
rrl 1473836 n.179A>G non_coding_transcript_exon_variant 0.2
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.21
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.21
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 0.2
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.13
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 0.14
rrl 1474350 n.693G>C non_coding_transcript_exon_variant 0.17
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.17
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.2
rrl 1474374 n.717T>G non_coding_transcript_exon_variant 0.17
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 0.12
rrl 1474452 n.795C>G non_coding_transcript_exon_variant 0.13
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.13
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.13
rrl 1474629 n.972G>A non_coding_transcript_exon_variant 0.13
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.13
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.13
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.13
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.12
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.12
rrl 1474720 n.1063C>T non_coding_transcript_exon_variant 0.17
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.18
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.19
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.21
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.16
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.15
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.15
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.13
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.14
rrl 1475603 n.1946G>C non_coding_transcript_exon_variant 0.13
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.13
rrl 1475606 n.1949T>C non_coding_transcript_exon_variant 0.13
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.13
rrl 1475613 n.1956A>T non_coding_transcript_exon_variant 0.13
rrl 1475615 n.1958C>A non_coding_transcript_exon_variant 0.13
rrl 1475616 n.1959A>G non_coding_transcript_exon_variant 0.14
rrl 1475626 n.1969T>C non_coding_transcript_exon_variant 0.14
rrl 1475627 n.1970G>C non_coding_transcript_exon_variant 0.14
rrl 1475628 n.1971G>C non_coding_transcript_exon_variant 0.14
rrl 1475629 n.1972G>A non_coding_transcript_exon_variant 0.14
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 0.13
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.13
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.13
rrl 1475643 n.1986C>G non_coding_transcript_exon_variant 0.13
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.16
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.14
rrl 1475707 n.2050T>G non_coding_transcript_exon_variant 0.15
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.15
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.19
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.18
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.19
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.19
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.17
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.17
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.17
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.18
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.18
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.17
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.17
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.17
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.17
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.17
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.17
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.22
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.25
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.24
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.22
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.22
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.24
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.21
rrl 1476252 n.2595T>A non_coding_transcript_exon_variant 0.21
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.2
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.22
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.22
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.19
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.16
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.12
rpsA 1833733 c.192C>T synonymous_variant 0.13
rpsA 1833734 p.Ala65Ser missense_variant 0.13
rpsA 1833745 c.204G>C synonymous_variant 0.16
rpsA 1833787 c.246C>G synonymous_variant 0.15
rpsA 1833790 c.249T>C synonymous_variant 0.15
rpsA 1833793 c.252C>T synonymous_variant 0.15
rpsA 1833811 c.270G>C synonymous_variant 0.15
rpsA 1833832 c.291G>A synonymous_variant 0.18
rpsA 1833841 c.300C>G synonymous_variant 0.19
rpsA 1833847 c.306C>G synonymous_variant 0.21
rpsA 1833856 c.315A>G synonymous_variant 0.2
rpsA 1833862 c.321G>C synonymous_variant 0.19
rpsA 1833874 c.333T>C synonymous_variant 0.14
rpsA 1833892 c.351G>A synonymous_variant 0.15
rpsA 1833894 p.Ala118Glu missense_variant 0.15
rpsA 1833901 c.360G>A synonymous_variant 0.12
rpsA 1833928 c.387G>C synonymous_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv2752c 3065293 p.Val300Ala missense_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 0.98
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339014 c.-104C>A upstream_gene_variant 0.97
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612009 p.Ala370Thr missense_variant 1.0
rpoA 3877794 c.714G>T synonymous_variant 0.14
rpoA 3877818 c.690A>G synonymous_variant 0.14
rpoA 3877848 c.660C>T synonymous_variant 0.14
rpoA 3877856 c.652T>C synonymous_variant 0.14
rpoA 3877857 c.651G>A synonymous_variant 0.14
rpoA 3877866 c.642G>C synonymous_variant 0.15
rpoA 3877872 c.636C>T synonymous_variant 0.15
rpoA 3877875 c.633T>C synonymous_variant 0.15
rpoA 3877896 c.612G>C synonymous_variant 0.12
rpoA 3877920 c.588G>C synonymous_variant 0.13
rpoA 3877926 c.582G>C synonymous_variant 0.13
rpoA 3877962 c.546G>T synonymous_variant 0.17
rpoA 3877971 p.Asp179Glu missense_variant 0.17
rpoA 3877986 c.522G>C synonymous_variant 0.18
rpoA 3877989 c.519A>G synonymous_variant 0.19
rpoA 3878001 c.505_507delTCAinsAGC synonymous_variant 0.2
rpoA 3878019 c.489A>G synonymous_variant 0.19
rpoA 3878022 c.486T>C synonymous_variant 0.19
rpoA 3878028 c.480G>C synonymous_variant 0.18
rpoA 3878031 c.477T>C synonymous_variant 0.18
rpoA 3878034 c.474A>G synonymous_variant 0.17
rpoA 3878040 c.468T>C synonymous_variant 0.17
rpoA 3878046 c.462T>C synonymous_variant 0.16
rpoA 3878050 p.Arg153Lys missense_variant 0.16
rpoA 3878055 c.453A>G synonymous_variant 0.16
rpoA 3878061 c.447G>C synonymous_variant 0.19
rpoA 3878064 c.444G>C synonymous_variant 0.19
rpoA 3878070 c.438T>C synonymous_variant 0.21
rpoA 3878082 c.426T>C synonymous_variant 0.24
rpoA 3878103 c.405A>G synonymous_variant 0.24
rpoA 3878106 c.402G>C synonymous_variant 0.24
rpoA 3878118 c.390T>C synonymous_variant 0.23
rpoA 3878124 c.384G>C synonymous_variant 0.22
rpoA 3878127 c.381G>C synonymous_variant 0.22
rpoA 3878143 p.Gly122Asp missense_variant 0.23
rpoA 3878160 c.348C>G synonymous_variant 0.19
rpoA 3878163 c.345C>T synonymous_variant 0.2
rpoA 3878172 c.336G>C synonymous_variant 0.2
rpoA 3878187 c.321C>G synonymous_variant 0.18
rpoA 3878193 c.315T>C synonymous_variant 0.19
rpoA 3878202 c.306G>T synonymous_variant 0.21
rpoA 3878205 c.303T>C synonymous_variant 0.22
rpoA 3878217 c.291A>G synonymous_variant 0.21
rpoA 3878247 c.261G>C synonymous_variant 0.21
rpoA 3878253 c.255G>C synonymous_variant 0.19
rpoA 3878256 c.252G>C synonymous_variant 0.18
rpoA 3878264 p.Ser82Gly missense_variant 0.19
rpoA 3878271 c.237T>C synonymous_variant 0.14
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038812 c.1893T>C synonymous_variant 0.15
clpC1 4038932 c.1773G>C synonymous_variant 0.14
clpC1 4038953 c.1752A>G synonymous_variant 0.15
clpC1 4038956 c.1749T>C synonymous_variant 0.15
clpC1 4038965 c.1740T>C synonymous_variant 0.15
clpC1 4038971 c.1734T>C synonymous_variant 0.15
clpC1 4038974 c.1731T>G synonymous_variant 0.15
clpC1 4038989 c.1716T>C synonymous_variant 0.13
clpC1 4038997 c.1708T>C synonymous_variant 0.14
clpC1 4039004 c.1701C>G synonymous_variant 0.13
clpC1 4039724 c.981A>G synonymous_variant 0.14
clpC1 4040105 c.600C>G synonymous_variant 0.15
clpC1 4040144 c.561G>C synonymous_variant 0.18
clpC1 4040147 c.558A>G synonymous_variant 0.16
clpC1 4040153 c.552A>G synonymous_variant 0.19
clpC1 4040162 c.543G>C synonymous_variant 0.16
clpC1 4040165 c.540G>C synonymous_variant 0.16
clpC1 4040168 c.537G>C synonymous_variant 0.16
clpC1 4040171 c.534C>G synonymous_variant 0.16
clpC1 4040180 c.525C>T synonymous_variant 0.18
clpC1 4040200 c.505T>C synonymous_variant 0.19
clpC1 4040201 c.504C>G synonymous_variant 0.18
clpC1 4040207 c.498T>G synonymous_variant 0.18
clpC1 4040210 c.495G>C synonymous_variant 0.19
clpC1 4040213 c.492T>A synonymous_variant 0.19
clpC1 4040228 c.477G>A synonymous_variant 0.21
clpC1 4040237 c.468C>T synonymous_variant 0.21
clpC1 4040243 c.462C>T synonymous_variant 0.21
clpC1 4040249 c.456A>G synonymous_variant 0.22
clpC1 4040257 p.Ala150Thr missense_variant 0.23
clpC1 4040267 c.438A>G synonymous_variant 0.24
clpC1 4040273 c.432T>A synonymous_variant 0.22
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.19
clpC1 4040279 c.426C>G synonymous_variant 0.19
clpC1 4040291 c.414G>C synonymous_variant 0.21
clpC1 4040300 c.405C>T synonymous_variant 0.2
clpC1 4040330 c.375C>G synonymous_variant 0.16
clpC1 4040335 c.370C>T synonymous_variant 0.16
clpC1 4040345 c.360C>G synonymous_variant 0.14
embC 4239763 c.-100C>T upstream_gene_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0