lineage | Count |
---|---|
148 | |
lineage2.2.1 | 19 |
La1.8.1 | 5 |
lineage3 | 6 |
lineage4.5 | 2 |
lineage2.2 | 5 |
lineage1.1.2 | 3 |
lineage7 | 71 |
lineage4.1.2.1 | 20 |
lineage9;lineage3.1 | 1 |
lineage2 | 3 |
lineage4.9 | 39 |
lineage4 | 39 |
lineage4.4.1.1 | 5 |
lineage4.1.1.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.3.4 | 1 |
lineage2.2.1;La3 | 1 |
lineage4.1 | 3 |
lineage4.1.1 | 2 |
lineage4.3.4.2.1 | 4 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.8 | 8 |
lineage4.1.1.3 | 1 |
lineage1.1.1.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.1.2 | 2 |
lineage1.1.1 | 2 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage2.2.1.1 | 2 |
lineage1.1 | 1 |
lineage5.2 | 2 |
lineage4.2.1 | 1 |
lineage3.1 | 4 |
La2 | 1 |
lineage4.7 | 1 |
lineage4.3.4.2 | 2 |
lineage4.3.2.1 | 1 |
lineage4.3.3 | 6 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage3;La3 | 1 |
La1 | 2 |
lineage4.6.2.2 | 3 |
lineage4.1.3 | 2 |
lineage1.2.2.2 | 1 |
lineage4.3.4.1 | 2 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 2 |
lineage1.1.3.1 | 1 |
lineage6 | 2 |
lineage6.3.1 | 1 |
lineage6.2.3 | 1 |
lineage6.1.3 | 2 |
La3 | 1 |
lineage1.2.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 443 |
ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | None | SRR1640750 | HR-TB | None | SRR15723286 | Sensitive | lineage2.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR17658565 | Other | lineage3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1791747 | Other | La1.8.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR18911237 | Sensitive | lineage7 | None | SRR19303884 | HR-TB | None | SRR2101360 | MDR-TB | lineage4.1.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR11068570 | Other | lineage4 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR11068109 | Sensitive | lineage7 | None | SRR9588018 | MDR-TB | lineage4.4.1.1 | None | ERR11068585 | Sensitive | lineage7 | None | ERR181744 | HR-TB | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR27332343 | Sensitive | lineage7 | None | ERR176751 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675383 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR233354 | Sensitive | lineage7 | None | SRR3675510 | Other | None | ERR4816999 | Other | None | ERR2229542 | Other | lineage4.8 | None | ERR212033 | HR-TB | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | ERR212001 | HR-TB | None | SRR3675572 | Other | None | SRR3675558 | HR-TB | None | ERR212034 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | ERR212121 | HR-TB | None | ERR233355 | Sensitive | lineage7 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR5073748 | Sensitive | lineage1.1.1.1 | vn | ERR233349 | Other | lineage7 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818021 | Other | La1.8.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR234659 | HR-TB | None | ERR234681 | Sensitive | lineage7 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4818394 | Other | lineage4.9 | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | SAMEA4791119 | Sensitive | lineage7 | au | ERR4818347 | Other | lineage4.1.2 | None | ERR4818561 | HR-TB | lineage4 | None | ERR181435 | Sensitive | lineage7 | dj | ERR400415 | Sensitive | lineage7 | gb | ERR4819314 | Other | lineage1.1.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | SRR5341299 | Sensitive | lineage4 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | ERR4819975 | Sensitive | lineage7 | None | ERR2514821 | Other | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR1971864 | Sensitive | lineage7 | et | ERR1971859 | Sensitive | lineage7 | et | ERR1971870 | Sensitive | lineage7 | et | ERR1971876 | Sensitive | lineage7 | et | ERR1971867 | Sensitive | lineage7 | et | ERR1971877 | Sensitive | lineage7 | et | ERR1971873 | Sensitive | lineage7 | et | ERR1971854 | Sensitive | lineage7 | et | ERR1971874 | Sensitive | lineage7 | et | ERR1971852 | Sensitive | lineage7 | et | ERR1971860 | Sensitive | lineage7 | et | ERR1971856 | Sensitive | lineage7 | et | SRR5341469 | Other | lineage4 | None | ERR1971872 | Sensitive | lineage7 | et | ERR1971863 | Sensitive | lineage7 | et | ERR1971871 | Sensitive | lineage7 | et | ERR1971869 | Sensitive | lineage7 | et | ERR1971868 | Sensitive | lineage7 | et | ERR1971862 | Sensitive | lineage7 | et | ERR1971849 | Sensitive | lineage7 | et | ERR1971850 | Sensitive | lineage7 | et | ERR1971853 | Sensitive | lineage7 | et | ERR1971861 | Sensitive | lineage7 | et | ERR1971855 | Sensitive | lineage7 | et | ERR1971858 | Sensitive | lineage7 | et | ERR1971865 | Sensitive | lineage7 | et | ERR1971866 | Sensitive | lineage7 | et | ERR4821053 | Other | lineage3 | None | ERR1971857 | Sensitive | lineage7 | et | ERR2693239 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2704710 | Sensitive | lineage7 | None | ERR2704711 | Sensitive | lineage7 | None | SRR15723256 | Sensitive | lineage2.2 | None | SRR6045577 | Sensitive | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045952 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046015 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045399 | Other | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046397 | Other | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | ERR1200631 | Sensitive | lineage7 | et | ERR1200619 | Sensitive | lineage7 | et | SRR6046878 | HR-TB | lineage4 | None | ERR1200625 | Sensitive | lineage7 | et | ERR1200604 | Sensitive | lineage7 | et | ERR1200617 | Other | lineage7 | et | ERR1200613 | Sensitive | lineage7 | et | ERR1200612 | Sensitive | lineage7 | et | ERR1200635 | Sensitive | lineage7 | et | ERR1200636 | Other | lineage7 | et | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR1200602 | Sensitive | lineage7 | et | ERR1200639 | Sensitive | lineage7 | et | ERR1200624 | Sensitive | lineage7 | et | ERR1200610 | Sensitive | lineage7 | et | ERR1200640 | Sensitive | lineage7 | et | ERR3077978 | Other | lineage1.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR1200606 | Sensitive | lineage7 | et | ERR1200623 | Sensitive | lineage7 | et | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | ERR1200608 | Sensitive | lineage7 | et | ERR1200633 | Sensitive | lineage7 | et | ERR1200634 | Sensitive | lineage7 | et | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR4814968 | Sensitive | lineage7 | gb | SRR6789626 | Other | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR294248 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | SRR7535086 | Other | None | SRR7585435 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR11641184 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323038 | HR-TB | None | ERR323043 | HR-TB | None | ERR11488822 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR1034652 | Other | None | ERR323085 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR1035157 | Other | lineage4.9 | None | ERR1035122 | Sensitive | None | ERR1063857 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063859 | HR-TB | None | ERR11043150 | Sensitive | lineage7 | None | ERR1063896 | Sensitive | None | ERR3283017 | HR-TB | None | ERR11049020 | Other | lineage4.8 | None | ERR11049146 | Sensitive | lineage7 | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR11044943 | Sensitive | lineage7 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3323719 | Sensitive | lineage7 | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797069 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407463 | HR-TB | None | ERR4024991 | Other | None | ERR4188350 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797474 | Other | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4800341 | Other | lineage3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5336148 | Other | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6358991 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR702404 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736835 | HR-TB | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736839 | Other | None | ERR736872 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR756347 | Sensitive | lineage7 | None | ERR756345 | Sensitive | lineage7 | None | ERR756348 | Sensitive | lineage7 | None | ERR756344 | Sensitive | lineage7 | None | ERR7737753 | MDR-TB | lineage7 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR756346 | Sensitive | lineage7 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9787030 | Sensitive | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787061 | Sensitive | lineage6.2.3 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787165 | Other | lineage6 | None | SRR1158918 | Sensitive | lineage4 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787197 | Other | None | SRR10315567 | Other | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1196768 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196494 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13837696 | HR-TB | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13837498 | Sensitive | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861376 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861606 | Sensitive | lineage4.9 | None | SRR13861575 | Other | lineage4.9 | None | SRR13861627 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14801749 | Sensitive | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None |
---|