Run ID: ERR4799171
Sample name:
Date: 01-04-2023 08:55:19
Number of reads: 1936870
Percentage reads mapped: 84.54
Strain: lineage4.8
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.98 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.92 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7581 | p.Asp94His | missense_variant | 0.91 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.73 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 0.93 | isoniazid |
pncA | 2288850 | c.391dupG | frameshift_variant | 0.98 | pyrazinamide, pyrazinamide |
embB | 4249518 | p.His1002Arg | missense_variant | 0.93 | ethambutol |
ethA | 4326922 | c.550_551dupGG | frameshift_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6196 | c.957C>T | synonymous_variant | 0.14 |
gyrB | 6268 | c.1029C>G | synonymous_variant | 0.14 |
gyrB | 6280 | c.1041T>C | synonymous_variant | 0.15 |
gyrB | 6286 | c.1047T>C | synonymous_variant | 0.18 |
gyrB | 6292 | c.1053G>T | synonymous_variant | 0.2 |
gyrB | 6295 | c.1056A>G | synonymous_variant | 0.2 |
gyrA | 6307 | c.-995T>G | upstream_gene_variant | 0.17 |
gyrA | 6970 | c.-332C>T | upstream_gene_variant | 0.13 |
gyrA | 6973 | c.-329G>C | upstream_gene_variant | 0.14 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7694 | c.393A>G | synonymous_variant | 0.17 |
gyrA | 7697 | c.396C>G | synonymous_variant | 0.15 |
gyrA | 7710 | c.409_411delTTGinsCTC | synonymous_variant | 0.15 |
gyrA | 8177 | c.876A>C | synonymous_variant | 0.16 |
gyrA | 8693 | c.1392T>C | synonymous_variant | 0.14 |
gyrA | 8711 | c.1410A>C | synonymous_variant | 0.14 |
gyrA | 8717 | c.1416C>G | synonymous_variant | 0.14 |
gyrA | 8719 | p.Glu473Gly | missense_variant | 0.14 |
gyrA | 8729 | c.1428T>C | synonymous_variant | 0.14 |
gyrA | 8740 | p.Arg480His | missense_variant | 0.2 |
gyrA | 8747 | c.1446A>G | synonymous_variant | 0.2 |
gyrA | 8751 | p.Ala484Ser | missense_variant | 0.19 |
gyrA | 8762 | c.1461G>C | synonymous_variant | 0.19 |
gyrA | 8767 | p.Arg489Lys | missense_variant | 0.18 |
gyrA | 8796 | p.Ile499Val | missense_variant | 0.16 |
gyrA | 8801 | c.1500G>C | synonymous_variant | 0.15 |
gyrA | 8810 | c.1509A>T | synonymous_variant | 0.15 |
gyrA | 8818 | p.Ser506Asn | missense_variant | 0.14 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.16 |
gyrA | 8918 | c.1617C>G | synonymous_variant | 0.18 |
gyrA | 8946 | c.1645T>C | synonymous_variant | 0.23 |
gyrA | 8966 | c.1665C>G | synonymous_variant | 0.2 |
gyrA | 8967 | p.Ala556Arg | missense_variant | 0.18 |
gyrA | 8984 | c.1683C>T | synonymous_variant | 0.19 |
gyrA | 8990 | c.1689C>G | synonymous_variant | 0.19 |
gyrA | 8996 | c.1695T>C | synonymous_variant | 0.2 |
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.18 |
gyrA | 9023 | c.1722A>C | synonymous_variant | 0.16 |
gyrA | 9029 | c.1728T>C | synonymous_variant | 0.15 |
gyrA | 9032 | c.1731T>C | synonymous_variant | 0.15 |
gyrA | 9035 | c.1734G>C | synonymous_variant | 0.17 |
gyrA | 9051 | c.1750T>C | synonymous_variant | 0.18 |
gyrA | 9056 | c.1755C>G | synonymous_variant | 0.18 |
gyrA | 9065 | c.1764C>T | synonymous_variant | 0.18 |
gyrA | 9068 | c.1767G>A | synonymous_variant | 0.18 |
gyrA | 9071 | c.1770G>C | synonymous_variant | 0.18 |
gyrA | 9074 | c.1773G>T | synonymous_variant | 0.18 |
gyrA | 9080 | c.1779G>T | synonymous_variant | 0.18 |
gyrA | 9089 | c.1788G>C | synonymous_variant | 0.15 |
gyrA | 9092 | c.1791C>G | synonymous_variant | 0.15 |
gyrA | 9101 | c.1800A>G | synonymous_variant | 0.14 |
gyrA | 9104 | c.1803C>G | synonymous_variant | 0.15 |
gyrA | 9119 | c.1818A>G | synonymous_variant | 0.15 |
gyrA | 9122 | c.1821C>G | synonymous_variant | 0.14 |
fgd1 | 491144 | p.Ala121Asp | missense_variant | 0.13 |
fgd1 | 491166 | c.384G>C | synonymous_variant | 0.18 |
fgd1 | 491181 | c.399T>C | synonymous_variant | 0.18 |
fgd1 | 491191 | p.Gly137Arg | missense_variant | 0.17 |
fgd1 | 491194 | c.412C>T | synonymous_variant | 0.14 |
fgd1 | 491259 | c.477T>C | synonymous_variant | 0.16 |
mshA | 575617 | c.270C>G | synonymous_variant | 0.16 |
mshA | 575623 | c.276C>G | synonymous_variant | 0.17 |
mshA | 575680 | c.333C>T | synonymous_variant | 0.16 |
mshA | 575704 | c.357T>G | synonymous_variant | 0.18 |
mshA | 575705 | c.358_360delTTGinsCTC | synonymous_variant | 0.18 |
mshA | 575713 | c.366G>A | synonymous_variant | 0.2 |
mshA | 575728 | c.381C>G | synonymous_variant | 0.23 |
mshA | 575734 | c.387T>G | synonymous_variant | 0.21 |
mshA | 575737 | c.390T>C | synonymous_variant | 0.2 |
mshA | 575746 | c.399C>G | synonymous_variant | 0.18 |
mshA | 575752 | c.405G>C | synonymous_variant | 0.17 |
mshA | 575756 | c.409C>T | synonymous_variant | 0.17 |
mshA | 575770 | c.423G>C | synonymous_variant | 0.17 |
mshA | 575771 | p.Val142Ser | missense_variant | 0.18 |
mshA | 575779 | c.432A>G | synonymous_variant | 0.18 |
mshA | 575785 | c.438T>C | synonymous_variant | 0.18 |
mshA | 575812 | c.465C>T | synonymous_variant | 0.16 |
ccsA | 620226 | c.336G>A | synonymous_variant | 0.2 |
ccsA | 620238 | c.348G>C | synonymous_variant | 0.19 |
ccsA | 620245 | c.355T>C | synonymous_variant | 0.2 |
ccsA | 620249 | p.Ser120Cys | missense_variant | 0.19 |
ccsA | 620256 | c.366C>G | synonymous_variant | 0.18 |
ccsA | 620265 | c.375C>G | synonymous_variant | 0.16 |
ccsA | 620275 | c.385C>T | synonymous_variant | 0.16 |
ccsA | 620283 | c.393T>C | synonymous_variant | 0.16 |
ccsA | 620284 | p.Ala132Pro | missense_variant | 0.16 |
ccsA | 620288 | p.Arg133Gln | missense_variant | 0.16 |
ccsA | 620295 | c.405G>C | synonymous_variant | 0.2 |
ccsA | 620310 | c.420C>T | synonymous_variant | 0.22 |
ccsA | 620319 | c.429C>G | synonymous_variant | 0.21 |
ccsA | 620337 | c.447C>G | synonymous_variant | 0.16 |
ccsA | 620569 | p.Gly227Arg | missense_variant | 0.14 |
ccsA | 620607 | c.717T>G | synonymous_variant | 0.16 |
ccsA | 620613 | c.723C>T | synonymous_variant | 0.16 |
ccsA | 620622 | c.732G>C | synonymous_variant | 0.16 |
ccsA | 620625 | c.735A>C | synonymous_variant | 0.2 |
ccsA | 620631 | c.741T>G | synonymous_variant | 0.2 |
ccsA | 620634 | c.744C>G | synonymous_variant | 0.21 |
ccsA | 620649 | c.759A>G | synonymous_variant | 0.3 |
ccsA | 620659 | c.769_771delCGCinsAGG | synonymous_variant | 0.29 |
ccsA | 620664 | c.774C>T | synonymous_variant | 0.28 |
ccsA | 620682 | c.792G>A | synonymous_variant | 0.26 |
ccsA | 620688 | c.798G>C | synonymous_variant | 0.26 |
ccsA | 620710 | p.Val274Ile | missense_variant | 0.2 |
ccsA | 620718 | c.828G>C | synonymous_variant | 0.15 |
ccsA | 620721 | c.831G>C | synonymous_variant | 0.17 |
ccsA | 620724 | c.834C>T | synonymous_variant | 0.17 |
ccsA | 620733 | c.843G>C | synonymous_variant | 0.18 |
ccsA | 620734 | c.844C>A | synonymous_variant | 0.18 |
ccsA | 620745 | c.855G>C | synonymous_variant | 0.18 |
ccsA | 620748 | c.858T>A | synonymous_variant | 0.19 |
ccsA | 620760 | c.870C>G | synonymous_variant | 0.16 |
ccsA | 620763 | c.873G>A | synonymous_variant | 0.16 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.17 |
rpoB | 760595 | c.789C>G | synonymous_variant | 0.18 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.2 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.16 |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.17 |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.16 |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.16 |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.16 |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.15 |
rpoB | 760730 | c.924T>C | synonymous_variant | 0.14 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.22 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.26 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.3 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.33 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.3 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.33 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.33 |
rpoB | 761075 | c.1269G>A | synonymous_variant | 0.35 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.29 |
rpoB | 761129 | c.1323G>C | synonymous_variant | 0.24 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.24 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.24 |
rpoB | 761147 | c.1341C>T | synonymous_variant | 0.22 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.23 |
rpoB | 761153 | c.1347G>C | synonymous_variant | 0.23 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.18 |
rpoB | 761171 | c.1365C>T | synonymous_variant | 0.18 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.21 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.17 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.17 |
rpoB | 761198 | c.1392G>C | synonymous_variant | 0.18 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.18 |
rpoB | 761220 | c.1414_1416delTCGinsAGC | synonymous_variant | 0.17 |
rpoB | 761492 | c.1686G>C | synonymous_variant | 0.14 |
rpoB | 761510 | c.1704T>C | synonymous_variant | 0.14 |
rpoB | 761834 | c.2028T>C | synonymous_variant | 0.15 |
rpoB | 761858 | c.2052G>C | synonymous_variant | 0.16 |
rpoB | 761867 | c.2061C>T | synonymous_variant | 0.18 |
rpoB | 761873 | c.2067A>C | synonymous_variant | 0.18 |
rpoB | 761885 | c.2079T>C | synonymous_variant | 0.19 |
rpoB | 761891 | c.2085G>C | synonymous_variant | 0.16 |
rpoB | 761903 | c.2097T>G | synonymous_variant | 0.15 |
rpoB | 761912 | c.2106T>C | synonymous_variant | 0.15 |
rpoB | 761915 | p.Asp703Glu | missense_variant | 0.15 |
rpoB | 761916 | p.Asp704Asn | missense_variant | 0.15 |
rpoB | 761942 | c.2136C>T | synonymous_variant | 0.15 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.15 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.15 |
rpoB | 762011 | c.2205G>C | synonymous_variant | 0.16 |
rpoB | 762017 | c.2211A>G | synonymous_variant | 0.13 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.15 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.16 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.17 |
rpoB | 762068 | c.2262C>G | synonymous_variant | 0.16 |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.18 |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.21 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.22 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.23 |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.21 |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.19 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.18 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.24 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.24 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.27 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.32 |
rpoB | 762224 | c.2418C>G | synonymous_variant | 0.34 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.33 |
rpoB | 762249 | c.2443C>T | synonymous_variant | 0.34 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.32 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.3 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.29 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.25 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.29 |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.26 |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.22 |
rpoB | 762338 | c.2532T>C | synonymous_variant | 0.18 |
rpoB | 762347 | c.2541T>C | synonymous_variant | 0.16 |
rpoC | 762380 | c.-990T>C | upstream_gene_variant | 0.15 |
rpoC | 762857 | c.-513C>G | upstream_gene_variant | 0.15 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.15 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.18 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.18 |
rpoC | 762957 | c.-413C>T | upstream_gene_variant | 0.23 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.22 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.22 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.2 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.19 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.21 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.16 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.16 |
rpoC | 763049 | c.-321G>A | upstream_gene_variant | 0.16 |
rpoC | 763214 | c.-156T>C | upstream_gene_variant | 0.14 |
rpoC | 763238 | c.-132T>C | upstream_gene_variant | 0.14 |
rpoC | 763414 | c.45T>C | synonymous_variant | 0.14 |
rpoC | 763441 | c.72C>T | synonymous_variant | 0.21 |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.22 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.26 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.24 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.16 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.19 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.16 |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.17 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.16 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.15 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.16 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.2 |
rpoC | 763771 | c.402C>T | synonymous_variant | 0.23 |
rpoC | 763780 | c.411C>G | synonymous_variant | 0.21 |
rpoC | 763792 | p.Glu141Asp | missense_variant | 0.22 |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.2 |
rpoC | 763813 | c.444C>T | synonymous_variant | 0.17 |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.17 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.15 |
rpoC | 763853 | p.Val162Ile | missense_variant | 0.18 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.18 |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.15 |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.14 |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.14 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.15 |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.17 |
rpoC | 764102 | p.Val245Ile | missense_variant | 0.18 |
rpoC | 764112 | p.Tyr248Phe | missense_variant | 0.14 |
rpoC | 764131 | c.762T>C | synonymous_variant | 0.16 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.2 |
rpoC | 764194 | p.Glu275Asp | missense_variant | 0.18 |
rpoC | 764195 | p.Ser276Thr | missense_variant | 0.18 |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.21 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.19 |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.19 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.19 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.18 |
rpoC | 764272 | c.903G>C | synonymous_variant | 0.19 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.15 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.22 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.22 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.23 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.26 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.26 |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.28 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.29 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.28 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.27 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.27 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.22 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.19 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.19 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.19 |
rpoC | 764669 | p.Pro434Thr | missense_variant | 0.74 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.22 |
rpoC | 764719 | c.1350G>A | synonymous_variant | 0.21 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.25 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.25 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.33 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.31 |
rpoC | 764797 | c.1428G>C | synonymous_variant | 0.3 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.25 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.27 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.22 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.23 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.25 |
rpoC | 765379 | c.2010G>C | synonymous_variant | 0.16 |
rpoC | 765383 | p.Met672Leu | missense_variant | 0.16 |
rpoC | 765398 | c.2029C>T | synonymous_variant | 0.18 |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.18 |
rpoC | 765409 | c.2040T>G | synonymous_variant | 0.21 |
rpoC | 765452 | p.Ala695Ser | missense_variant | 0.19 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.23 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.19 |
rpoC | 765508 | c.2139C>G | synonymous_variant | 0.17 |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.14 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.18 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.14 |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.14 |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.16 |
rpoC | 765784 | c.2415C>G | synonymous_variant | 0.18 |
rpoC | 765793 | c.2424C>G | synonymous_variant | 0.19 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.21 |
rpoC | 765811 | c.2442T>G | synonymous_variant | 0.22 |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.21 |
rpoC | 765871 | c.2502T>C | synonymous_variant | 0.25 |
rpoC | 765877 | c.2508C>G | synonymous_variant | 0.25 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.24 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.25 |
rpoC | 765982 | c.2613C>G | synonymous_variant | 0.28 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.24 |
rpoC | 766010 | c.2641_2642delTCinsAG | synonymous_variant | 0.18 |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.17 |
rpoC | 766027 | c.2658G>C | synonymous_variant | 0.17 |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.14 |
rpoC | 766597 | c.3228C>G | synonymous_variant | 0.15 |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.15 |
rpoC | 766645 | c.3276A>G | synonymous_variant | 0.16 |
rpoC | 766651 | c.3282T>C | synonymous_variant | 0.17 |
rpoC | 766657 | c.3288A>G | synonymous_variant | 0.19 |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.16 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.17 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.19 |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.22 |
rpoC | 766895 | c.3526T>C | synonymous_variant | 0.21 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.2 |
rpoC | 766933 | c.3564A>C | synonymous_variant | 0.19 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.17 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.19 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.19 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.19 |
rpoC | 767008 | c.3639G>A | synonymous_variant | 0.17 |
rpoC | 767032 | c.3663G>T | synonymous_variant | 0.19 |
rpoC | 767035 | c.3666G>C | synonymous_variant | 0.19 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.17 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.17 |
rpoC | 767074 | c.3705T>C | synonymous_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775901 | c.2580G>A | synonymous_variant | 0.14 |
mmpL5 | 775909 | p.Leu858Phe | missense_variant | 0.19 |
mmpL5 | 775913 | c.2568C>G | synonymous_variant | 0.18 |
mmpL5 | 775916 | c.2565T>G | synonymous_variant | 0.18 |
mmpL5 | 775937 | c.2544G>C | synonymous_variant | 0.19 |
mmpL5 | 775940 | c.2541C>T | synonymous_variant | 0.19 |
mmpL5 | 775951 | c.2530C>T | synonymous_variant | 0.21 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781628 | c.69T>C | synonymous_variant | 0.19 |
rpsL | 781631 | c.72G>C | synonymous_variant | 0.19 |
rpsL | 781649 | c.90T>C | synonymous_variant | 0.19 |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.19 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.18 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.19 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.22 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.21 |
rpsL | 781733 | c.174G>C | synonymous_variant | 0.21 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.2 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.21 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.21 |
rpsL | 781769 | c.210G>A | synonymous_variant | 0.16 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.16 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.17 |
rpsL | 781820 | c.261G>C | synonymous_variant | 0.17 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.15 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.23 |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.16 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.15 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.15 |
rpsL | 781877 | c.318T>C | synonymous_variant | 0.15 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.14 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.14 |
rplC | 800814 | c.6A>G | synonymous_variant | 0.17 |
rplC | 800817 | c.9A>T | synonymous_variant | 0.17 |
rplC | 800844 | c.36T>C | synonymous_variant | 0.17 |
rplC | 800865 | c.57A>G | synonymous_variant | 0.16 |
rplC | 800867 | p.Ser20Asn | missense_variant | 0.14 |
fbiC | 1303890 | c.960G>C | synonymous_variant | 0.17 |
fbiC | 1303956 | c.1026A>G | synonymous_variant | 0.14 |
fbiC | 1303961 | p.Arg344Leu | missense_variant | 0.14 |
fbiC | 1303974 | c.1044C>T | synonymous_variant | 0.14 |
fbiC | 1303986 | c.1056C>T | synonymous_variant | 0.14 |
fbiC | 1304868 | c.1938G>C | synonymous_variant | 0.14 |
fbiC | 1304869 | c.1939C>T | synonymous_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472300 | n.455C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472753 | n.908A>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473717 | n.60G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473746 | n.89T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1473943 | n.286G>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1473945 | n.288T>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1473946 | n.289A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473986 | n.329T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1473987 | n.330G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474409 | n.756_766delACCCACACGCG | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474427 | n.770A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474429 | n.772G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474435 | n.780_783delGAAT | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474961 | n.1304T>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474963 | n.1306G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474964 | n.1307T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474969 | n.1312G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475006 | n.1349A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475013 | n.1356G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475289 | n.1632G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475436 | n.1779C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475765 | n.2111delG | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476031 | n.2374C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476033 | n.2376T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476034 | n.2377C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476048 | n.2391G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476214 | n.2557G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476716 | n.3059A>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476723 | n.3066T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476726 | n.3069A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476732 | n.3075T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476750 | n.3093T>C | non_coding_transcript_exon_variant | 0.14 |
inhA | 1673799 | c.-403T>G | upstream_gene_variant | 0.22 |
inhA | 1673802 | c.-400A>G | upstream_gene_variant | 0.19 |
inhA | 1673808 | c.-394A>C | upstream_gene_variant | 0.21 |
fabG1 | 1673832 | p.Lys131Asn | missense_variant | 0.14 |
inhA | 1673838 | c.-364T>C | upstream_gene_variant | 0.15 |
inhA | 1673841 | c.-361A>G | upstream_gene_variant | 0.16 |
fabG1 | 1673844 | p.Met135Ile | missense_variant | 0.15 |
inhA | 1673853 | c.-349A>C | upstream_gene_variant | 0.14 |
inhA | 1673856 | c.-346T>G | upstream_gene_variant | 0.16 |
inhA | 1673862 | c.-340C>G | upstream_gene_variant | 0.14 |
inhA | 1673871 | c.-331C>T | upstream_gene_variant | 0.17 |
inhA | 1673877 | c.-325C>T | upstream_gene_variant | 0.17 |
inhA | 1673901 | c.-301A>G | upstream_gene_variant | 0.21 |
fabG1 | 1673905 | p.Ser156Ala | missense_variant | 0.19 |
inhA | 1673916 | c.-286A>C | upstream_gene_variant | 0.17 |
fabG1 | 1673917 | p.Val160Leu | missense_variant | 0.17 |
inhA | 1673922 | c.-280T>C | upstream_gene_variant | 0.17 |
fabG1 | 1673941 | p.Ala168Ser | missense_variant | 0.16 |
inhA | 1673950 | c.-252C>T | upstream_gene_variant | 0.16 |
inhA | 1673961 | c.-241A>C | upstream_gene_variant | 0.15 |
inhA | 1673976 | c.-226T>C | upstream_gene_variant | 0.18 |
inhA | 1673985 | c.-217C>G | upstream_gene_variant | 0.18 |
fabG1 | 1674006 | p.Asp189Glu | missense_variant | 0.14 |
inhA | 1674018 | c.-184G>C | upstream_gene_variant | 0.14 |
inhA | 1674542 | p.Ala114Glu | missense_variant | 0.15 |
inhA | 1674555 | c.354G>A | synonymous_variant | 0.15 |
inhA | 1674561 | c.360C>T | synonymous_variant | 0.18 |
inhA | 1674589 | p.Met130Leu | missense_variant | 0.19 |
inhA | 1674597 | p.Lys132Asn | missense_variant | 0.18 |
inhA | 1674618 | c.417C>T | synonymous_variant | 0.17 |
inhA | 1674624 | c.423A>C | synonymous_variant | 0.16 |
inhA | 1674636 | c.435C>G | synonymous_variant | 0.15 |
inhA | 1674660 | c.459G>C | synonymous_variant | 0.16 |
inhA | 1674690 | c.489C>G | synonymous_variant | 0.17 |
inhA | 1674703 | c.502T>C | synonymous_variant | 0.23 |
inhA | 1674708 | c.507G>A | synonymous_variant | 0.23 |
inhA | 1674718 | c.517A>C | synonymous_variant | 0.24 |
inhA | 1674738 | c.537C>G | synonymous_variant | 0.31 |
inhA | 1674746 | p.Tyr182Phe | missense_variant | 0.3 |
inhA | 1674753 | c.552G>C | synonymous_variant | 0.32 |
inhA | 1674756 | c.555T>C | synonymous_variant | 0.32 |
inhA | 1674759 | c.558G>C | synonymous_variant | 0.32 |
inhA | 1674774 | c.573A>G | synonymous_variant | 0.28 |
inhA | 1674777 | c.576C>A | synonymous_variant | 0.26 |
inhA | 1674780 | c.579T>G | synonymous_variant | 0.27 |
inhA | 1674801 | c.600T>C | synonymous_variant | 0.2 |
inhA | 1674816 | c.615T>C | synonymous_variant | 0.2 |
inhA | 1674846 | p.Ile215Met | missense_variant | 0.19 |
inhA | 1674870 | c.669T>C | synonymous_variant | 0.18 |
inhA | 1674879 | c.678T>C | synonymous_variant | 0.14 |
rpsA | 1833637 | c.96C>T | synonymous_variant | 0.17 |
rpsA | 1833649 | c.108C>T | synonymous_variant | 0.19 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.18 |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.2 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.16 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.14 |
rpsA | 1833730 | c.189C>T | synonymous_variant | 0.14 |
rpsA | 1833733 | c.192C>G | synonymous_variant | 0.16 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.16 |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.15 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.19 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.2 |
rpsA | 1833971 | c.430C>T | synonymous_variant | 0.22 |
rpsA | 1833976 | c.435C>G | synonymous_variant | 0.25 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.24 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.23 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.24 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.21 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.15 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.16 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.15 |
rpsA | 1834259 | c.718_720delCTAinsTTG | synonymous_variant | 0.16 |
rpsA | 1834262 | c.721_723delTCGinsAGT | synonymous_variant | 0.15 |
rpsA | 1834279 | c.738C>T | synonymous_variant | 0.17 |
rpsA | 1834297 | c.756C>T | synonymous_variant | 0.18 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.26 |
rpsA | 1834396 | c.855G>T | synonymous_variant | 0.17 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.15 |
rpsA | 1834414 | c.873C>T | synonymous_variant | 0.16 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.16 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.16 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.16 |
rpsA | 1834606 | c.1065C>T | synonymous_variant | 0.17 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.18 |
rpsA | 1834622 | c.1081_1083delTCGinsAGC | synonymous_variant | 0.2 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.21 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.21 |
rpsA | 1834654 | c.1113G>A | synonymous_variant | 0.26 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.26 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289969 | c.-728G>C | upstream_gene_variant | 0.91 |
pncA | 2289997 | c.-756G>C | upstream_gene_variant | 0.14 |
pncA | 2290006 | c.-765T>C | upstream_gene_variant | 0.15 |
pncA | 2290009 | c.-768A>G | upstream_gene_variant | 0.15 |
kasA | 2517923 | c.-192C>G | upstream_gene_variant | 0.32 |
kasA | 2517926 | c.-189G>A | upstream_gene_variant | 0.32 |
kasA | 2517968 | c.-147T>C | upstream_gene_variant | 0.24 |
kasA | 2517974 | c.-141T>G | upstream_gene_variant | 0.24 |
kasA | 2518843 | c.729T>G | synonymous_variant | 0.16 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.15 |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.16 |
kasA | 2518882 | c.768C>T | synonymous_variant | 0.15 |
kasA | 2518885 | c.771T>C | synonymous_variant | 0.15 |
kasA | 2518898 | c.784T>C | synonymous_variant | 0.15 |
kasA | 2518906 | c.792A>G | synonymous_variant | 0.14 |
kasA | 2518910 | p.Leu266Met | missense_variant | 0.14 |
folC | 2746353 | p.Ala416Ser | missense_variant | 0.14 |
Rv2752c | 3066018 | c.174T>C | synonymous_variant | 0.13 |
thyA | 3073983 | c.489C>G | synonymous_variant | 0.13 |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.14 |
thyA | 3074034 | c.438T>C | synonymous_variant | 0.14 |
thyA | 3074037 | c.435C>G | synonymous_variant | 0.14 |
ald | 3087647 | c.830dupG | frameshift_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.14 |
rpoA | 3877590 | c.918G>C | synonymous_variant | 0.14 |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.15 |
rpoA | 3877617 | c.891G>C | synonymous_variant | 0.13 |
rpoA | 3877803 | c.705G>C | synonymous_variant | 0.14 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.15 |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.14 |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.16 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.15 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.14 |
rpoA | 3878022 | c.486T>C | synonymous_variant | 0.16 |
rpoA | 3878025 | c.483C>T | synonymous_variant | 0.16 |
rpoA | 3878028 | c.480G>C | synonymous_variant | 0.17 |
rpoA | 3878031 | c.477T>C | synonymous_variant | 0.17 |
rpoA | 3878040 | c.468T>C | synonymous_variant | 0.16 |
rpoA | 3878046 | c.462T>C | synonymous_variant | 0.16 |
rpoA | 3878055 | c.453A>G | synonymous_variant | 0.16 |
rpoA | 3878061 | c.447G>C | synonymous_variant | 0.16 |
rpoA | 3878067 | c.441C>G | synonymous_variant | 0.16 |
rpoA | 3878070 | c.438T>C | synonymous_variant | 0.16 |
rpoA | 3878076 | c.432C>T | synonymous_variant | 0.17 |
rpoA | 3878094 | c.414C>G | synonymous_variant | 0.17 |
rpoA | 3878103 | c.405A>G | synonymous_variant | 0.16 |
rpoA | 3878106 | c.402G>C | synonymous_variant | 0.14 |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.15 |
rpoA | 3878127 | c.381G>C | synonymous_variant | 0.13 |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.16 |
clpC1 | 4038740 | c.1965G>C | synonymous_variant | 0.2 |
clpC1 | 4038755 | c.1950G>C | synonymous_variant | 0.15 |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.15 |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.14 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.15 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.17 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.16 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.16 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.17 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.16 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.2 |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.2 |
clpC1 | 4039082 | c.1623C>T | synonymous_variant | 0.2 |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.2 |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.21 |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.19 |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.17 |
clpC1 | 4039112 | c.1593C>A | synonymous_variant | 0.17 |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.14 |
clpC1 | 4039292 | c.1413C>G | synonymous_variant | 0.14 |
clpC1 | 4039295 | c.1410A>C | synonymous_variant | 0.16 |
clpC1 | 4039298 | c.1407T>C | synonymous_variant | 0.17 |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.22 |
clpC1 | 4039328 | c.1377A>C | synonymous_variant | 0.24 |
clpC1 | 4039337 | c.1368A>C | synonymous_variant | 0.24 |
clpC1 | 4039349 | c.1356C>T | synonymous_variant | 0.24 |
clpC1 | 4039352 | c.1353C>G | synonymous_variant | 0.24 |
clpC1 | 4039364 | c.1341C>G | synonymous_variant | 0.2 |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 0.2 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.15 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.15 |
clpC1 | 4039415 | p.Glu430Asp | missense_variant | 0.15 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.18 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.16 |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.18 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.16 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.16 |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.17 |
clpC1 | 4039574 | p.Ala377Pro | missense_variant | 0.15 |
clpC1 | 4039601 | c.1104G>C | synonymous_variant | 0.19 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.21 |
clpC1 | 4039661 | c.1044T>G | synonymous_variant | 0.14 |
clpC1 | 4039673 | c.1032G>C | synonymous_variant | 0.15 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.19 |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 0.17 |
clpC1 | 4039996 | p.Glu237Gln | missense_variant | 0.18 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.22 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.22 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.18 |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 0.18 |
clpC1 | 4040090 | c.615T>C | synonymous_variant | 0.23 |
clpC1 | 4040105 | c.600C>G | synonymous_variant | 0.18 |
clpC1 | 4040117 | c.588A>G | synonymous_variant | 0.17 |
embC | 4240615 | c.753G>C | synonymous_variant | 0.16 |
embC | 4240630 | c.768C>G | synonymous_variant | 0.19 |
embC | 4240632 | p.Met257Thr | missense_variant | 0.19 |
embC | 4240642 | c.780G>C | synonymous_variant | 0.21 |
embC | 4240645 | c.783G>C | synonymous_variant | 0.22 |
embC | 4240670 | p.Thr270Val | missense_variant | 0.21 |
embC | 4240678 | c.816T>C | synonymous_variant | 0.21 |
embC | 4240685 | p.Thr275Ala | missense_variant | 0.2 |
embC | 4240693 | c.831T>C | synonymous_variant | 0.19 |
embC | 4240726 | c.864G>C | synonymous_variant | 0.24 |
embC | 4240819 | c.957A>G | synonymous_variant | 0.15 |
embC | 4240828 | c.966G>C | synonymous_variant | 0.16 |
embC | 4240831 | c.969T>C | synonymous_variant | 0.17 |
embC | 4240837 | c.975C>G | synonymous_variant | 0.15 |
embC | 4241107 | c.1245G>C | synonymous_variant | 0.14 |
embC | 4241140 | c.1278A>G | synonymous_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245137 | c.1905T>C | synonymous_variant | 0.15 |
embB | 4248157 | c.1644A>G | synonymous_variant | 0.15 |
embB | 4248173 | p.Val554Met | missense_variant | 0.16 |
embB | 4248205 | c.1692C>G | synonymous_variant | 0.21 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.21 |
embB | 4248211 | c.1698G>A | synonymous_variant | 0.2 |
embB | 4248220 | c.1707A>G | synonymous_variant | 0.2 |
embB | 4248304 | c.1791G>C | synonymous_variant | 0.15 |
ubiA | 4269124 | p.Ala237Val | missense_variant | 0.94 |
ethR | 4326844 | c.-705G>C | upstream_gene_variant | 0.99 |
whiB6 | 4338362 | p.Arg54Gly | missense_variant | 0.95 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408061 | p.His48Asn | missense_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |