lineage | Count |
---|---|
69 | |
lineage4.9 | 10 |
lineage4 | 11 |
lineage2.2.1 | 8 |
lineage4.5 | 1 |
lineage4.3.4.1 | 1 |
lineage3 | 4 |
lineage2 | 2 |
lineage4.9;La3 | 1 |
lineage1.1.2 | 2 |
lineage6.3;lineage2.2.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.8 | 3 |
lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage2.2 | 3 |
La1.8.1 | 4 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage4.1.2 | 1 |
lineage4.1.2.1 | 5 |
lineage1 | 1 |
lineage4.2.1 | 1 |
lineage4.7 | 1 |
La1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage6.3.1 | 1 |
spoligotype | Count |
---|---|
None | 139 |
ID | Drug resistance | Lineage | Country iso2 | SRR1173629 | Other | None | SRR1169194 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR12142341 | HR-TB | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1196546 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR15368973 | Other | None | SRR17658565 | Other | lineage3 | None | SRR25827682 | Other | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR11068570 | Other | lineage4 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675311 | Other | None | ERR4816999 | Other | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | ERR4817060 | RR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675572 | Other | None | ERR212138 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4818615 | Other | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR234659 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4819933 | Other | lineage4.9 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045327 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2747633 | Other | La1.8.1 | None | SRR6044855 | Other | lineage4.9 | None | SRR6045028 | Sensitive | lineage1 | None | SRR6046362 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046460 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR502532 | HR-TB | None | SRR6789626 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7535086 | Other | None | SRR7496517 | Other | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR11049020 | Other | lineage4.8 | None | ERR323043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR4407463 | HR-TB | None | ERR5336148 | Other | None | ERR3797069 | Other | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR4188247 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR736839 | Other | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR736848 | HR-TB | None | ERR736867 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786604 | Other | None | ERR736874 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None |
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