TB-Profiler result

Run: ERR2229542
Summary

Run ID: ERR2229542

Sample name:

Date: 31-03-2023 17:18:19

Number of reads: 1147201

Percentage reads mapped: 71.55

Strain: lineage4.8

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 0.94
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.57 streptomycin
embB 4247448 p.His312Arg missense_variant 0.17 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6123 p.Ala295Gly missense_variant 0.16
gyrB 6196 c.957C>T synonymous_variant 0.16
gyrB 6268 c.1029C>G synonymous_variant 0.17
gyrB 6280 c.1041T>C synonymous_variant 0.26
gyrB 6286 c.1047T>C synonymous_variant 0.28
gyrB 6289 c.1050C>T synonymous_variant 0.25
gyrB 6292 c.1053G>C synonymous_variant 0.26
gyrA 6307 c.-995T>G upstream_gene_variant 0.27
gyrA 6319 c.-983G>C upstream_gene_variant 0.21
gyrA 6598 c.-704C>G upstream_gene_variant 0.19
gyrA 6610 c.-692C>G upstream_gene_variant 0.18
gyrA 6613 c.-689A>G upstream_gene_variant 0.17
gyrA 6616 c.-686A>G upstream_gene_variant 0.17
gyrA 6622 c.-680C>T upstream_gene_variant 0.2
gyrA 6634 c.-668T>C upstream_gene_variant 0.2
gyrA 6637 c.-665T>G upstream_gene_variant 0.19
gyrA 6640 c.-662A>G upstream_gene_variant 0.18
gyrA 6643 c.-659A>G upstream_gene_variant 0.19
gyrA 6649 c.-653T>C upstream_gene_variant 0.25
gyrA 6655 c.-647T>C upstream_gene_variant 0.23
gyrA 6670 c.-632G>C upstream_gene_variant 0.26
gyrA 6673 c.-629A>C upstream_gene_variant 0.23
gyrA 6676 c.-626T>G upstream_gene_variant 0.25
gyrA 6700 c.-602T>C upstream_gene_variant 0.3
gyrA 6703 c.-599G>C upstream_gene_variant 0.33
gyrA 6709 c.-593A>G upstream_gene_variant 0.29
gyrA 6712 c.-590G>C upstream_gene_variant 0.26
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.29
gyrA 6973 c.-329G>C upstream_gene_variant 0.2
gyrA 7018 c.-284G>A upstream_gene_variant 0.16
gyrA 7033 c.-269G>C upstream_gene_variant 0.18
gyrB 7051 p.Glu604Asp missense_variant 0.18
gyrA 7075 c.-227T>C upstream_gene_variant 0.16
gyrA 7078 c.-224A>C upstream_gene_variant 0.16
gyrA 7093 c.-209T>G upstream_gene_variant 0.15
gyrA 7141 c.-161T>C upstream_gene_variant 0.19
gyrA 7147 c.-155G>C upstream_gene_variant 0.23
gyrA 7165 c.-137C>G upstream_gene_variant 0.27
gyrA 7178 c.-124T>C upstream_gene_variant 0.19
gyrA 7186 c.-116C>G upstream_gene_variant 0.17
gyrA 7234 c.-68C>T upstream_gene_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7391 c.90C>T synonymous_variant 0.15
gyrA 7394 c.93T>C synonymous_variant 0.17
gyrA 7427 c.126G>C synonymous_variant 0.31
gyrA 7442 c.141G>C synonymous_variant 0.33
gyrA 7451 c.150C>G synonymous_variant 0.36
gyrA 7457 c.156T>C synonymous_variant 0.35
gyrA 7475 c.174A>G synonymous_variant 0.21
gyrA 7480 p.Phe60Tyr missense_variant 0.16
gyrA 7490 c.189C>G synonymous_variant 0.17
gyrA 7523 c.222C>G synonymous_variant 0.23
gyrA 7532 c.231T>G synonymous_variant 0.22
gyrA 7541 c.240C>G synonymous_variant 0.28
gyrA 7547 c.246C>T synonymous_variant 0.28
gyrA 7571 c.270G>C synonymous_variant 0.23
gyrA 7585 p.Ser95Thr missense_variant 0.21
gyrA 7595 c.294C>G synonymous_variant 0.2
gyrA 7601 c.300C>G synonymous_variant 0.19
gyrA 7607 c.306C>T synonymous_variant 0.24
gyrA 7622 c.321C>T synonymous_variant 0.18
gyrA 7625 c.324G>C synonymous_variant 0.18
gyrA 7631 c.330G>C synonymous_variant 0.22
gyrA 7637 c.336C>G synonymous_variant 0.22
gyrA 7652 c.351C>T synonymous_variant 0.22
gyrA 7658 c.357A>C synonymous_variant 0.21
gyrA 7664 c.363T>C synonymous_variant 0.22
gyrA 7670 c.369A>G synonymous_variant 0.23
gyrA 7679 c.378G>C synonymous_variant 0.22
gyrA 7685 c.384G>A synonymous_variant 0.16
gyrA 7688 c.387C>T synonymous_variant 0.17
gyrA 7853 c.552C>G synonymous_variant 0.15
gyrA 7858 p.Ala186Glu missense_variant 0.15
gyrA 7865 c.564T>C synonymous_variant 0.18
gyrA 7886 c.585T>C synonymous_variant 0.21
gyrA 8078 c.777A>G synonymous_variant 0.17
gyrA 8090 c.789C>A synonymous_variant 0.29
gyrA 8093 c.792C>T synonymous_variant 0.29
gyrA 8096 c.795T>A synonymous_variant 0.3
gyrA 8099 c.798T>C synonymous_variant 0.3
gyrA 8111 c.810G>C synonymous_variant 0.26
gyrA 8121 c.820T>C synonymous_variant 0.27
gyrA 8129 c.828T>C synonymous_variant 0.28
gyrA 8135 c.834C>G synonymous_variant 0.27
gyrA 8156 c.855T>C synonymous_variant 0.27
gyrA 8168 c.867A>G synonymous_variant 0.33
gyrA 8177 c.876A>C synonymous_variant 0.34
gyrA 8198 c.897T>C synonymous_variant 0.29
gyrA 8207 c.906T>C synonymous_variant 0.27
gyrA 8219 c.918T>C synonymous_variant 0.2
gyrA 8225 c.924T>C synonymous_variant 0.22
gyrA 8234 c.933T>C synonymous_variant 0.24
gyrA 8237 c.936A>G synonymous_variant 0.27
gyrA 8247 p.Ile316Val missense_variant 0.32
gyrA 8264 c.963T>C synonymous_variant 0.29
gyrA 8267 c.966G>C synonymous_variant 0.29
gyrA 8270 c.969G>C synonymous_variant 0.26
gyrA 8276 c.975G>A synonymous_variant 0.24
gyrA 8283 p.Ile328Leu missense_variant 0.21
gyrA 8288 c.987T>C synonymous_variant 0.22
gyrA 8294 c.993T>C synonymous_variant 0.28
gyrA 8324 c.1023T>C synonymous_variant 0.2
gyrA 8330 c.1029C>G synonymous_variant 0.2
gyrA 8339 c.1038A>G synonymous_variant 0.19
gyrA 8340 p.Ala347Ser missense_variant 0.19
gyrA 8372 c.1071G>C synonymous_variant 0.17
gyrA 8375 c.1074G>C synonymous_variant 0.17
gyrA 8382 p.Leu361Met missense_variant 0.15
gyrA 8619 c.1318_1320delTTGinsCTA synonymous_variant 0.19
gyrA 8624 c.1323G>C synonymous_variant 0.17
gyrA 8636 c.1335A>C synonymous_variant 0.21
gyrA 8642 c.1341A>G synonymous_variant 0.23
gyrA 8672 c.1371A>G synonymous_variant 0.18
gyrA 8678 c.1377G>A synonymous_variant 0.19
gyrA 8693 c.1392T>C synonymous_variant 0.21
gyrA 8711 c.1410A>C synonymous_variant 0.16
gyrA 9068 c.1767G>C synonymous_variant 0.17
gyrA 9071 c.1770G>C synonymous_variant 0.19
gyrA 9080 c.1779G>T synonymous_variant 0.17
gyrA 9089 c.1788G>C synonymous_variant 0.25
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.25
gyrA 9104 c.1803C>G synonymous_variant 0.26
gyrA 9119 c.1818A>G synonymous_variant 0.33
gyrA 9122 c.1821C>G synonymous_variant 0.31
gyrA 9143 c.1842T>C synonymous_variant 0.33
gyrA 9152 c.1851C>T synonymous_variant 0.33
gyrA 9153 p.Thr618Glu missense_variant 0.33
gyrA 9158 c.1857C>T synonymous_variant 0.36
gyrA 9161 c.1860C>G synonymous_variant 0.36
gyrA 9182 c.1881T>C synonymous_variant 0.26
gyrA 9191 c.1890G>C synonymous_variant 0.28
gyrA 9200 c.1899A>G synonymous_variant 0.34
gyrA 9204 p.Ser635Thr missense_variant 0.35
gyrA 9224 c.1923C>T synonymous_variant 0.22
gyrA 9230 c.1929T>C synonymous_variant 0.23
gyrA 9233 c.1932C>G synonymous_variant 0.22
gyrA 9239 c.1938C>T synonymous_variant 0.21
gyrA 9252 p.Val651Ile missense_variant 0.26
gyrA 9284 c.1983T>C synonymous_variant 0.25
gyrA 9291 c.1990C>T synonymous_variant 0.22
gyrA 9296 c.1995T>C synonymous_variant 0.24
gyrA 9299 c.1998G>C synonymous_variant 0.23
gyrA 9300 p.Ala667Ser missense_variant 0.23
gyrA 9304 p.Gly668Asp missense_variant 0.23
gyrA 9308 p.Asp669Glu missense_variant 0.23
gyrA 9323 c.2022C>G synonymous_variant 0.19
gyrA 9335 c.2034G>C synonymous_variant 0.22
fgd1 491130 c.348C>G synonymous_variant 0.22
fgd1 491144 p.Ala121Asp missense_variant 0.35
fgd1 491151 c.369G>A synonymous_variant 0.36
fgd1 491173 c.391C>A synonymous_variant 0.24
fgd1 491181 c.399T>C synonymous_variant 0.22
fgd1 491184 c.402A>G synonymous_variant 0.23
fgd1 491191 p.Gly137Arg missense_variant 0.19
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 0.19
fgd1 491202 c.420G>C synonymous_variant 0.22
fgd1 491203 p.Gln141Glu missense_variant 0.22
fgd1 491212 p.Ser144Arg missense_variant 0.25
fgd1 491217 c.435T>C synonymous_variant 0.26
fgd1 491232 c.450T>C synonymous_variant 0.28
fgd1 491241 p.Asp153Glu missense_variant 0.24
fgd1 491244 c.462T>C synonymous_variant 0.25
fgd1 491259 c.477T>C synonymous_variant 0.24
mshA 575659 c.312A>G synonymous_variant 0.17
mshA 575665 c.318G>A synonymous_variant 0.15
mshA 575674 c.327G>C synonymous_variant 0.19
mshA 575695 c.348C>G synonymous_variant 0.23
mshA 575701 c.354G>A synonymous_variant 0.21
mshA 575704 c.357T>G synonymous_variant 0.21
mshA 575705 c.358T>C synonymous_variant 0.22
mshA 575713 c.366G>A synonymous_variant 0.19
mshA 575719 c.372C>T synonymous_variant 0.2
mshA 575782 c.435G>C synonymous_variant 0.18
mshA 575812 c.465C>T synonymous_variant 0.33
mshA 575821 c.474G>C synonymous_variant 0.34
mshA 575824 c.477T>G synonymous_variant 0.36
mshA 575830 c.483C>G synonymous_variant 0.39
mshA 575833 c.486C>G synonymous_variant 0.39
mshA 575845 c.498C>T synonymous_variant 0.42
mshA 575884 c.537G>C synonymous_variant 0.36
mshA 575887 c.540G>C synonymous_variant 0.34
mshA 575893 c.546C>G synonymous_variant 0.36
mshA 575896 c.549G>C synonymous_variant 0.34
mshA 575905 c.558G>C synonymous_variant 0.2
mshA 575908 c.561A>G synonymous_variant 0.21
mshA 575917 p.Asp190Glu missense_variant 0.21
mshA 575920 c.573C>G synonymous_variant 0.21
mshA 575924 p.Gly193Ser missense_variant 0.22
mshA 575944 c.597T>C synonymous_variant 0.23
mshA 575950 c.603C>G synonymous_variant 0.23
mshA 575959 c.612G>A synonymous_variant 0.22
mshA 576108 p.Ala254Gly missense_variant 0.2
mshA 576163 c.816A>C synonymous_variant 0.18
mshA 576166 c.819C>G synonymous_variant 0.18
ccsA 619697 c.-194_-192delAGGinsCGC upstream_gene_variant 0.19
ccsA 620310 c.420C>T synonymous_variant 0.18
ccsA 620317 p.Val143Leu missense_variant 0.19
ccsA 620340 c.450C>G synonymous_variant 0.25
ccsA 620346 c.456C>G synonymous_variant 0.23
ccsA 620362 p.Ala158Thr missense_variant 0.23
ccsA 620367 c.477T>C synonymous_variant 0.25
ccsA 620373 c.483C>G synonymous_variant 0.29
ccsA 620376 c.486G>C synonymous_variant 0.29
ccsA 620385 c.495G>C synonymous_variant 0.24
ccsA 620388 c.498A>G synonymous_variant 0.19
ccsA 620389 c.499C>T synonymous_variant 0.19
ccsA 620412 c.522T>C synonymous_variant 0.19
ccsA 620460 c.570T>G synonymous_variant 0.18
ccsA 620461 p.Val191Ile missense_variant 0.18
ccsA 620682 c.792G>A synonymous_variant 0.21
ccsA 620688 c.798G>C synonymous_variant 0.21
ccsA 620710 p.Val274Ile missense_variant 0.18
rpoB 760091 c.285G>C synonymous_variant 0.26
rpoB 760101 c.295T>C synonymous_variant 0.27
rpoB 760112 c.306T>C synonymous_variant 0.27
rpoB 760118 c.312T>G synonymous_variant 0.24
rpoB 760121 c.315T>C synonymous_variant 0.24
rpoB 760130 p.Asp108Glu missense_variant 0.24
rpoB 760139 c.333A>G synonymous_variant 0.27
rpoB 760142 c.336C>G synonymous_variant 0.25
rpoB 760181 c.375T>C synonymous_variant 0.27
rpoB 760184 c.378A>G synonymous_variant 0.27
rpoB 760196 c.390C>G synonymous_variant 0.29
rpoB 760223 c.417T>C synonymous_variant 0.26
rpoB 760235 c.429T>C synonymous_variant 0.31
rpoB 760283 c.477G>C synonymous_variant 0.4
rpoB 760298 c.492G>C synonymous_variant 0.42
rpoB 760307 c.501T>C synonymous_variant 0.39
rpoB 760310 c.504G>C synonymous_variant 0.36
rpoB 760328 c.522G>C synonymous_variant 0.35
rpoB 760331 c.525G>C synonymous_variant 0.35
rpoB 760340 c.534G>T synonymous_variant 0.42
rpoB 760361 c.555T>C synonymous_variant 0.38
rpoB 760370 c.564C>G synonymous_variant 0.34
rpoB 760376 p.Asp190Glu missense_variant 0.29
rpoB 760380 p.Thr192Leu missense_variant 0.29
rpoB 760406 c.600G>C synonymous_variant 0.23
rpoB 760412 c.606C>G synonymous_variant 0.23
rpoB 760522 p.Ser239Asn missense_variant 0.17
rpoB 760532 c.726T>C synonymous_variant 0.17
rpoB 760533 p.Val243Thr missense_variant 0.17
rpoB 760541 c.735G>C synonymous_variant 0.24
rpoB 760547 c.741G>C synonymous_variant 0.26
rpoB 760563 p.Arg253Met missense_variant 0.19
rpoB 760591 p.Val262Ala missense_variant 0.27
rpoB 760595 c.789C>T synonymous_variant 0.27
rpoB 760598 c.792C>A synonymous_variant 0.27
rpoB 760611 c.805T>C synonymous_variant 0.35
rpoB 760646 c.840C>G synonymous_variant 0.26
rpoB 760655 c.849A>G synonymous_variant 0.25
rpoB 760661 c.855A>C synonymous_variant 0.25
rpoB 760982 c.1176G>C synonymous_variant 0.18
rpoB 760985 c.1179G>C synonymous_variant 0.17
rpoB 760991 c.1185G>C synonymous_variant 0.2
rpoB 761006 c.1200C>G synonymous_variant 0.18
rpoB 761057 c.1251G>C synonymous_variant 0.27
rpoB 761102 c.1296A>G synonymous_variant 0.28
rpoB 761129 c.1323G>C synonymous_variant 0.26
rpoB 761132 c.1326G>T synonymous_variant 0.26
rpoB 761133 c.1327T>C synonymous_variant 0.27
rpoB 761150 c.1344A>C synonymous_variant 0.27
rpoB 761153 c.1347G>C synonymous_variant 0.28
rpoB 761165 c.1359G>C synonymous_variant 0.27
rpoB 761180 c.1374A>C synonymous_variant 0.3
rpoB 761189 c.1383T>C synonymous_variant 0.28
rpoB 761195 c.1389G>C synonymous_variant 0.36
rpoB 761207 c.1401C>T synonymous_variant 0.41
rpoB 761213 c.1407G>C synonymous_variant 0.42
rpoB 761219 c.1413G>C synonymous_variant 0.45
rpoB 761249 c.1443A>G synonymous_variant 0.4
rpoB 761255 c.1449T>G synonymous_variant 0.45
rpoB 761261 c.1455G>T synonymous_variant 0.44
rpoB 761306 c.1500C>G synonymous_variant 0.44
rpoB 761312 c.1506G>C synonymous_variant 0.42
rpoB 761327 c.1521A>G synonymous_variant 0.47
rpoB 761330 c.1524G>C synonymous_variant 0.44
rpoB 761354 c.1548C>T synonymous_variant 0.31
rpoB 761360 c.1554T>C synonymous_variant 0.3
rpoB 761362 p.Ser519Thr missense_variant 0.3
rpoB 761373 p.Val523His missense_variant 0.36
rpoB 761408 c.1602G>C synonymous_variant 0.31
rpoB 761414 c.1608A>G synonymous_variant 0.31
rpoB 761423 c.1617T>C synonymous_variant 0.27
rpoB 761438 c.1632G>C synonymous_variant 0.17
rpoB 761439 p.Asp545Lys missense_variant 0.17
rpoB 761444 c.1638T>C synonymous_variant 0.18
rpoB 761452 p.Val549Glu missense_variant 0.16
rpoB 761457 p.Pro551Ser missense_variant 0.17
rpoB 761537 c.1731C>G synonymous_variant 0.18
rpoB 761570 c.1764T>C synonymous_variant 0.2
rpoB 761573 c.1767C>G synonymous_variant 0.19
rpoB 761579 c.1773G>C synonymous_variant 0.23
rpoB 761588 c.1782C>T synonymous_variant 0.23
rpoB 761606 c.1800C>G synonymous_variant 0.17
rpoB 761906 c.2100C>G synonymous_variant 0.17
rpoB 761909 c.2103T>C synonymous_variant 0.17
rpoB 761912 c.2106T>C synonymous_variant 0.18
rpoB 761915 p.Asp703Glu missense_variant 0.18
rpoB 761916 p.Asp704Asn missense_variant 0.19
rpoB 761948 c.2142G>C synonymous_variant 0.3
rpoB 761954 c.2148C>G synonymous_variant 0.27
rpoB 762008 c.2202C>T synonymous_variant 0.23
rpoB 762014 c.2208C>T synonymous_variant 0.21
rpoB 762017 c.2211A>G synonymous_variant 0.19
rpoB 762032 c.2226C>T synonymous_variant 0.27
rpoB 762053 c.2247T>C synonymous_variant 0.31
rpoB 762062 c.2256T>C synonymous_variant 0.31
rpoB 762065 c.2259T>C synonymous_variant 0.31
rpoB 762083 c.2277T>C synonymous_variant 0.24
rpoB 762086 c.2280G>C synonymous_variant 0.23
rpoB 762143 c.2337T>C synonymous_variant 0.17
rpoB 762149 c.2343G>C synonymous_variant 0.19
rpoB 762167 c.2361T>C synonymous_variant 0.22
rpoB 762176 c.2370T>C synonymous_variant 0.29
rpoB 762185 c.2379G>C synonymous_variant 0.29
rpoB 762206 c.2400C>G synonymous_variant 0.32
rpoB 762233 c.2427G>C synonymous_variant 0.19
rpoB 762246 c.2440C>T synonymous_variant 0.23
rpoB 762254 c.2448T>G synonymous_variant 0.2
rpoB 762257 c.2451C>G synonymous_variant 0.2
rpoB 762266 c.2460T>C synonymous_variant 0.22
rpoB 762284 c.2478G>C synonymous_variant 0.2
rpoB 762314 c.2508C>T synonymous_variant 0.16
rpoB 762329 c.2523G>C synonymous_variant 0.25
rpoB 762338 c.2532T>C synonymous_variant 0.23
rpoB 762347 c.2541T>C synonymous_variant 0.37
rpoB 762362 p.Glu852Asp missense_variant 0.38
rpoB 762369 c.2563T>C synonymous_variant 0.38
rpoC 762398 c.-972T>C upstream_gene_variant 0.38
rpoC 762401 c.-969G>C upstream_gene_variant 0.37
rpoC 762404 c.-966T>C upstream_gene_variant 0.38
rpoC 762410 c.-960T>C upstream_gene_variant 0.4
rpoC 762416 c.-954A>G upstream_gene_variant 0.32
rpoC 762419 c.-951C>G upstream_gene_variant 0.33
rpoC 762434 c.-936T>C upstream_gene_variant 0.29
rpoC 762449 c.-921C>A upstream_gene_variant 0.26
rpoC 762467 c.-903C>T upstream_gene_variant 0.2
rpoC 762509 c.-861T>G upstream_gene_variant 0.16
rpoB 762510 p.Ala902Pro missense_variant 0.16
rpoC 762521 c.-849C>T upstream_gene_variant 0.16
rpoC 762929 c.-441G>C upstream_gene_variant 0.19
rpoC 762989 c.-381G>C upstream_gene_variant 0.24
rpoC 762995 c.-375G>T upstream_gene_variant 0.23
rpoC 763013 c.-357C>G upstream_gene_variant 0.29
rpoC 763028 c.-342T>C upstream_gene_variant 0.3
rpoC 763031 c.-339T>G upstream_gene_variant 0.29
rpoC 763034 c.-336C>G upstream_gene_variant 0.29
rpoC 763040 c.-330C>G upstream_gene_variant 0.31
rpoC 763070 c.-300T>C upstream_gene_variant 0.3
rpoC 763085 c.-285C>G upstream_gene_variant 0.28
rpoC 763115 c.-255T>C upstream_gene_variant 0.27
rpoC 763136 c.-234C>T upstream_gene_variant 0.26
rpoC 763148 c.-222G>C upstream_gene_variant 0.25
rpoC 763158 c.-212C>T upstream_gene_variant 0.24
rpoC 763166 c.-204A>G upstream_gene_variant 0.24
rpoC 763190 c.-180C>T upstream_gene_variant 0.21
rpoC 763214 c.-156T>C upstream_gene_variant 0.17
rpoC 763226 c.-144A>G upstream_gene_variant 0.23
rpoC 763227 c.-143C>T upstream_gene_variant 0.23
rpoC 763238 c.-132T>C upstream_gene_variant 0.22
rpoC 763441 c.72C>T synonymous_variant 0.16
rpoC 763528 c.159G>A synonymous_variant 0.19
rpoC 763546 c.177A>G synonymous_variant 0.21
rpoC 763570 c.201G>C synonymous_variant 0.23
rpoC 763573 c.204G>C synonymous_variant 0.22
rpoC 763594 c.225C>T synonymous_variant 0.25
rpoC 763603 c.234C>T synonymous_variant 0.23
rpoC 763636 c.267T>C synonymous_variant 0.17
rpoC 763702 c.333C>G synonymous_variant 0.16
rpoC 763717 c.348T>C synonymous_variant 0.17
rpoC 763741 c.372C>T synonymous_variant 0.19
rpoC 763744 c.375G>C synonymous_variant 0.21
rpoC 763765 c.396T>C synonymous_variant 0.26
rpoC 763774 c.405G>C synonymous_variant 0.22
rpoC 763807 c.438T>C synonymous_variant 0.26
rpoC 763816 c.447C>G synonymous_variant 0.26
rpoC 763825 c.456G>A synonymous_variant 0.28
rpoC 763835 p.Ala156Met missense_variant 0.27
rpoC 763853 p.Val162Ile missense_variant 0.21
rpoC 763858 c.489A>G synonymous_variant 0.18
rpoC 763987 c.618C>T synonymous_variant 0.17
rpoC 764002 c.633C>G synonymous_variant 0.19
rpoC 764005 c.636G>C synonymous_variant 0.24
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.33
rpoC 764032 p.Asp221Glu missense_variant 0.3
rpoC 764040 p.Ser224Thr missense_variant 0.32
rpoC 764044 c.675T>C synonymous_variant 0.32
rpoC 764059 c.690G>T synonymous_variant 0.36
rpoC 764083 c.714A>G synonymous_variant 0.44
rpoC 764098 c.729A>G synonymous_variant 0.33
rpoC 764101 c.732C>G synonymous_variant 0.33
rpoC 764102 p.Val245Ile missense_variant 0.33
rpoC 764112 p.Tyr248Phe missense_variant 0.26
rpoC 764116 c.747C>T synonymous_variant 0.23
rpoC 764131 c.762T>C synonymous_variant 0.41
rpoC 764140 c.771C>T synonymous_variant 0.45
rpoC 764188 c.819A>G synonymous_variant 0.41
rpoC 764195 p.Ser276Ile missense_variant 0.33
rpoC 764203 c.834G>C synonymous_variant 0.34
rpoC 764206 c.837T>C synonymous_variant 0.34
rpoC 764215 c.846A>G synonymous_variant 0.43
rpoC 764236 c.867G>A synonymous_variant 0.54
rpoC 764248 c.879C>G synonymous_variant 0.48
rpoC 764257 c.888G>C synonymous_variant 0.35
rpoC 764266 c.897T>C synonymous_variant 0.4
rpoC 764269 c.900G>C synonymous_variant 0.36
rpoC 764272 c.903G>C synonymous_variant 0.38
rpoC 764278 c.909A>G synonymous_variant 0.31
rpoC 764338 c.969G>A synonymous_variant 0.39
rpoC 764353 c.984G>C synonymous_variant 0.38
rpoC 764365 c.996C>T synonymous_variant 0.37
rpoC 764380 c.1011G>C synonymous_variant 0.3
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.3
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.27
rpoC 764405 c.1036A>C synonymous_variant 0.23
rpoC 764419 c.1050C>G synonymous_variant 0.29
rpoC 764428 c.1059G>C synonymous_variant 0.26
rpoC 764431 c.1062G>C synonymous_variant 0.26
rpoC 764434 c.1065A>G synonymous_variant 0.26
rpoC 764446 c.1077T>C synonymous_variant 0.3
rpoC 764449 c.1080G>C synonymous_variant 0.32
rpoC 764452 c.1083T>C synonymous_variant 0.34
rpoC 764458 c.1089G>C synonymous_variant 0.37
rpoC 764461 c.1092A>G synonymous_variant 0.38
rpoC 764489 c.1120C>T synonymous_variant 0.38
rpoC 764497 c.1128A>G synonymous_variant 0.37
rpoC 764510 c.1141C>T synonymous_variant 0.33
rpoC 764521 c.1152T>C synonymous_variant 0.32
rpoC 764527 c.1158C>T synonymous_variant 0.32
rpoC 764536 c.1167G>C synonymous_variant 0.37
rpoC 764539 c.1170C>G synonymous_variant 0.37
rpoC 764554 c.1185C>T synonymous_variant 0.39
rpoC 764560 c.1191T>C synonymous_variant 0.39
rpoC 764566 c.1197C>G synonymous_variant 0.4
rpoC 764575 c.1206T>G synonymous_variant 0.35
rpoC 764581 c.1212T>C synonymous_variant 0.36
rpoC 764593 c.1224C>T synonymous_variant 0.32
rpoC 764611 c.1242G>T synonymous_variant 0.28
rpoC 764650 c.1281G>C synonymous_variant 0.28
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.29
rpoC 764752 c.1383G>C synonymous_variant 0.27
rpoC 764764 c.1395T>C synonymous_variant 0.26
rpoC 764809 c.1440C>T synonymous_variant 0.23
rpoC 764815 c.1446A>G synonymous_variant 0.27
rpoC 764827 c.1458G>C synonymous_variant 0.27
rpoC 764858 c.1489T>C synonymous_variant 0.27
rpoC 764872 c.1503A>G synonymous_variant 0.23
rpoC 764888 c.1519T>C synonymous_variant 0.18
rpoC 764911 c.1542A>G synonymous_variant 0.18
rpoC 764932 c.1563C>A synonymous_variant 0.22
rpoC 764935 c.1566T>C synonymous_variant 0.21
rpoC 764948 c.1579T>C synonymous_variant 0.27
rpoC 764968 c.1599T>C synonymous_variant 0.21
rpoC 764995 c.1626C>G synonymous_variant 0.27
rpoC 765019 c.1650A>G synonymous_variant 0.26
rpoC 765034 c.1665T>C synonymous_variant 0.34
rpoC 765040 c.1671T>C synonymous_variant 0.27
rpoC 765041 c.1672T>C synonymous_variant 0.26
rpoC 765047 c.1678T>C synonymous_variant 0.27
rpoC 765053 c.1684_1685delTCinsAG synonymous_variant 0.27
rpoC 765073 c.1704G>C synonymous_variant 0.3
rpoC 765076 c.1707A>G synonymous_variant 0.3
rpoC 765079 c.1710T>G synonymous_variant 0.29
rpoC 765082 c.1713G>C synonymous_variant 0.29
rpoC 765089 c.1720T>C synonymous_variant 0.3
rpoC 765103 c.1734G>T synonymous_variant 0.22
rpoC 765292 c.1923G>C synonymous_variant 0.18
rpoC 765298 c.1929G>C synonymous_variant 0.19
rpoC 765300 p.Val644Ala missense_variant 0.19
rpoC 765319 c.1950A>G synonymous_variant 0.2
rpoC 765326 p.His653Ala missense_variant 0.2
rpoC 765329 p.Ser654Gly missense_variant 0.18
rpoC 765346 c.1977C>G synonymous_variant 0.19
rpoC 765349 c.1980T>C synonymous_variant 0.18
rpoC 765352 c.1983G>C synonymous_variant 0.18
rpoC 765404 p.Leu679Val missense_variant 0.25
rpoC 765409 c.2040T>C synonymous_variant 0.26
rpoC 765421 c.2052C>G synonymous_variant 0.33
rpoC 765478 c.2109T>C synonymous_variant 0.45
rpoC 765499 c.2130C>G synonymous_variant 0.36
rpoC 765529 c.2160C>T synonymous_variant 0.45
rpoC 765541 c.2172C>G synonymous_variant 0.47
rpoC 765553 c.2184C>T synonymous_variant 0.33
rpoC 765556 c.2187G>C synonymous_variant 0.34
rpoC 765559 c.2190G>C synonymous_variant 0.32
rpoC 765580 c.2211G>C synonymous_variant 0.4
rpoC 765613 p.His748Gln missense_variant 0.4
rpoC 765625 c.2256C>G synonymous_variant 0.41
rpoC 765631 p.Asp754Glu missense_variant 0.41
rpoC 765700 c.2331T>C synonymous_variant 0.42
rpoC 765734 c.2365T>C synonymous_variant 0.41
rpoC 765739 c.2370G>T synonymous_variant 0.43
rpoC 765751 c.2382C>G synonymous_variant 0.33
rpoC 765753 p.Asp795Ala missense_variant 0.29
rpoC 765772 c.2403C>G synonymous_variant 0.32
rpoC 765784 c.2415C>G synonymous_variant 0.3
rpoC 765787 c.2418C>T synonymous_variant 0.33
rpoC 765793 c.2424C>G synonymous_variant 0.33
rpoC 765796 c.2427C>T synonymous_variant 0.38
rpoC 765811 c.2442T>C synonymous_variant 0.38
rpoC 765814 c.2445A>G synonymous_variant 0.4
rpoC 765826 c.2457T>C synonymous_variant 0.46
rpoC 765835 c.2466C>T synonymous_variant 0.57
rpoC 765850 c.2481G>C synonymous_variant 0.5
rpoC 765883 c.2514C>G synonymous_variant 0.5
rpoC 765886 c.2517C>G synonymous_variant 0.5
rpoC 765892 c.2523T>C synonymous_variant 0.51
rpoC 765937 c.2568T>C synonymous_variant 0.35
rpoC 765967 c.2598C>T synonymous_variant 0.38
rpoC 765982 c.2613C>G synonymous_variant 0.4
rpoC 765994 c.2625A>T synonymous_variant 0.39
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.36
rpoC 766021 c.2652G>C synonymous_variant 0.36
rpoC 766027 c.2658G>C synonymous_variant 0.34
rpoC 766043 p.Gln892Glu missense_variant 0.31
rpoC 766054 c.2685C>G synonymous_variant 0.33
rpoC 766083 p.Ala905Glu missense_variant 0.14
rpoC 766096 c.2727G>C synonymous_variant 0.19
rpoC 766168 c.2799C>T synonymous_variant 0.22
rpoC 766174 p.Asn935Lys missense_variant 0.2
rpoC 766178 p.Ile937Val missense_variant 0.2
rpoC 766381 c.3012C>T synonymous_variant 0.2
rpoC 766384 c.3015A>G synonymous_variant 0.2
rpoC 766408 c.3039C>G synonymous_variant 0.21
rpoC 766411 c.3042C>G synonymous_variant 0.18
rpoC 766426 c.3057C>T synonymous_variant 0.22
rpoC 766447 c.3078T>C synonymous_variant 0.26
rpoC 766462 c.3093G>C synonymous_variant 0.29
rpoC 766483 c.3114G>C synonymous_variant 0.24
rpoC 766484 p.Val1039Ile missense_variant 0.24
rpoC 766492 c.3123T>C synonymous_variant 0.26
rpoC 766522 c.3153C>G synonymous_variant 0.19
rpoC 766528 c.3159T>C synonymous_variant 0.23
rpoC 766531 c.3162G>C synonymous_variant 0.21
rpoC 766549 c.3180G>C synonymous_variant 0.18
rpoC 766630 c.3261G>C synonymous_variant 0.2
rpoC 766738 c.3369G>C synonymous_variant 0.17
rpoC 766747 c.3378C>T synonymous_variant 0.19
rpoC 766900 c.3531T>C synonymous_variant 0.17
rpoC 766933 c.3564A>G synonymous_variant 0.18
rpoC 766945 c.3576A>G synonymous_variant 0.18
rpoC 766963 c.3594T>C synonymous_variant 0.17
rpoC 766972 c.3603G>C synonymous_variant 0.18
rpoC 766987 c.3618G>C synonymous_variant 0.17
rpoC 766996 c.3627C>T synonymous_variant 0.2
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.23
rpoC 767014 c.3645G>C synonymous_variant 0.23
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 0.25
rpoC 767059 c.3690T>G synonymous_variant 0.23
rpoC 767062 c.3693C>A synonymous_variant 0.23
rpoC 767098 c.3729T>C synonymous_variant 0.35
rpoC 767119 c.3750A>G synonymous_variant 0.32
rpoC 767134 c.3765C>A synonymous_variant 0.36
rpoC 767158 c.3789T>C synonymous_variant 0.31
rpoC 767180 p.Ala1271Gln missense_variant 0.29
rpoC 767191 c.3822C>G synonymous_variant 0.32
rpoC 767206 c.3837C>G synonymous_variant 0.33
rpoC 767209 c.3840T>C synonymous_variant 0.33
rpoC 767212 c.3843G>C synonymous_variant 0.33
rpoC 767221 c.3852C>G synonymous_variant 0.27
rpoC 767230 c.3861G>C synonymous_variant 0.25
rpoC 767233 c.3864T>C synonymous_variant 0.26
rpoC 767265 p.Ala1299Glu missense_variant 0.16
rpoC 767275 c.3906T>C synonymous_variant 0.17
rpoC 767281 c.3912C>G synonymous_variant 0.17
rpoC 767284 c.3915C>T synonymous_variant 0.17
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775975 c.2506T>C synonymous_variant 0.2
mmpL5 775981 p.Leu834Met missense_variant 0.19
mmpL5 776636 p.Glu615Asp missense_variant 0.19
mmpL5 776646 p.Val612Thr missense_variant 0.17
mmpL5 776654 c.1827A>C synonymous_variant 0.17
mmpL5 776664 p.Thr606Gly missense_variant 0.23
mmpL5 776678 c.1803G>C synonymous_variant 0.21
mmpL5 776693 p.Val596Ala missense_variant 0.23
mmpL5 776705 c.1776C>T synonymous_variant 0.26
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781571 c.12C>T synonymous_variant 0.18
rpsL 781595 c.36T>C synonymous_variant 0.32
rpsL 781605 p.Ile16Val missense_variant 0.31
rpsL 781608 p.Ser17Ala missense_variant 0.31
rpsL 781628 c.69T>C synonymous_variant 0.2
rpsL 781631 c.72G>C synonymous_variant 0.19
rpsL 781649 c.90T>C synonymous_variant 0.22
rpsL 781655 c.96T>C synonymous_variant 0.23
rpsL 781700 c.141G>C synonymous_variant 0.25
rpsL 781703 c.144G>T synonymous_variant 0.26
rpsL 781715 c.156T>C synonymous_variant 0.28
rpsL 781728 c.169T>C synonymous_variant 0.24
rpsL 781736 c.177T>C synonymous_variant 0.18
rpsL 781742 c.183C>T synonymous_variant 0.21
rpsL 781748 c.189C>G synonymous_variant 0.22
rpsL 781754 c.195G>C synonymous_variant 0.26
rpsL 781760 c.201T>C synonymous_variant 0.26
rpsL 781772 c.213C>A synonymous_variant 0.27
rpsL 781808 c.249C>T synonymous_variant 0.21
rpsL 781811 c.252C>T synonymous_variant 0.19
rpsL 781838 c.279G>C synonymous_variant 0.16
rpsL 781841 c.282C>G synonymous_variant 0.16
rpsL 781892 c.333A>G synonymous_variant 0.17
rpsL 781898 c.339A>T synonymous_variant 0.17
rpsL 781929 p.Gly124Ser missense_variant 0.16
rplC 800612 c.-197A>G upstream_gene_variant 0.18
rplC 800648 c.-161A>T upstream_gene_variant 0.17
rplC 800654 c.-155T>C upstream_gene_variant 0.17
rplC 800693 c.-116A>G upstream_gene_variant 0.22
rplC 800703 c.-106T>C upstream_gene_variant 0.23
rplC 800715 c.-94A>C upstream_gene_variant 0.18
rplC 800720 c.-89T>C upstream_gene_variant 0.18
rplC 800723 c.-86C>G upstream_gene_variant 0.18
rplC 800771 c.-38C>T upstream_gene_variant 0.16
rplC 800814 c.6A>G synonymous_variant 0.18
rplC 800817 c.9A>T synonymous_variant 0.18
rplC 800844 c.36T>C synonymous_variant 0.19
rplC 801339 c.531T>C synonymous_variant 0.22
rplC 801341 p.Leu178Gln missense_variant 0.22
rplC 801348 c.540T>G synonymous_variant 0.23
rplC 801357 c.549T>C synonymous_variant 0.29
rplC 801367 p.Ala187Thr missense_variant 0.28
rplC 801402 c.594T>C synonymous_variant 0.22
rplC 801405 c.597T>C synonymous_variant 0.21
fbiC 1303737 c.807G>A synonymous_variant 0.15
fbiC 1303746 c.816T>C synonymous_variant 0.19
fbiC 1303747 p.Thr273Ala missense_variant 0.81
fbiC 1303752 c.822A>G synonymous_variant 0.18
fbiC 1303755 c.825T>C synonymous_variant 0.18
fbiC 1303761 c.831T>C synonymous_variant 0.17
fbiC 1303785 c.855G>C synonymous_variant 0.17
fbiC 1303818 c.888C>G synonymous_variant 0.23
fbiC 1303836 c.906G>C synonymous_variant 0.18
fbiC 1303845 c.915C>G synonymous_variant 0.19
fbiC 1303860 c.930A>C synonymous_variant 0.16
fbiC 1303866 p.Glu312Asp missense_variant 0.18
fbiC 1303867 p.Asp313Asn missense_variant 0.18
fbiC 1303884 c.954T>G synonymous_variant 0.21
fbiC 1303905 c.975G>C synonymous_variant 0.2
fbiC 1303914 c.984C>G synonymous_variant 0.22
fbiC 1303920 c.990C>T synonymous_variant 0.21
fbiC 1304526 c.1596T>G synonymous_variant 0.19
fbiC 1304535 c.1605G>A synonymous_variant 0.28
fbiC 1304544 c.1614T>C synonymous_variant 0.23
fbiC 1304545 p.Val539Thr missense_variant 0.22
fbiC 1304553 c.1623C>T synonymous_variant 0.32
fbiC 1304559 p.Glu543Asp missense_variant 0.28
fbiC 1304565 c.1635C>G synonymous_variant 0.27
fbiC 1304568 c.1638T>C synonymous_variant 0.28
fbiC 1304580 c.1650T>C synonymous_variant 0.18
fbiC 1304778 c.1848T>C synonymous_variant 0.18
fbiC 1304784 c.1854T>C synonymous_variant 0.21
fbiC 1304787 c.1857T>G synonymous_variant 0.21
fbiC 1304808 c.1878C>G synonymous_variant 0.26
fbiC 1304811 c.1881C>G synonymous_variant 0.29
fbiC 1304817 c.1887T>C synonymous_variant 0.3
fbiC 1304829 c.1899T>C synonymous_variant 0.32
fbiC 1304832 c.1902C>T synonymous_variant 0.31
fbiC 1304856 c.1926C>G synonymous_variant 0.34
fbiC 1304869 c.1939C>T synonymous_variant 0.28
fbiC 1304875 p.Ile649Val missense_variant 0.26
fbiC 1304883 p.Glu651Asp missense_variant 0.31
fbiC 1304891 p.Ile654Thr missense_variant 0.29
fbiC 1304893 p.Gly655Ser missense_variant 0.31
fbiC 1304907 c.1977C>G synonymous_variant 0.27
fbiC 1304910 c.1980G>C synonymous_variant 0.3
fbiC 1304916 c.1986T>C synonymous_variant 0.3
fbiC 1304928 c.1998T>C synonymous_variant 0.28
fbiC 1304937 c.2007G>C synonymous_variant 0.27
fbiC 1304958 c.2028T>G synonymous_variant 0.27
fbiC 1304983 c.2053C>T synonymous_variant 0.21
fbiC 1305030 c.2100G>C synonymous_variant 0.21
fbiC 1305033 c.2103T>G synonymous_variant 0.21
fbiC 1305042 c.2112A>G synonymous_variant 0.2
fbiC 1305045 c.2115A>G synonymous_variant 0.18
atpE 1460852 c.-193C>G upstream_gene_variant 0.19
atpE 1460855 c.-190T>C upstream_gene_variant 0.19
atpE 1460861 c.-184C>G upstream_gene_variant 0.16
atpE 1460882 c.-163T>C upstream_gene_variant 0.25
atpE 1460894 c.-151A>G upstream_gene_variant 0.25
atpE 1460897 c.-148A>C upstream_gene_variant 0.21
atpE 1460900 c.-145T>C upstream_gene_variant 0.23
atpE 1460915 c.-130C>G upstream_gene_variant 0.27
atpE 1460918 c.-127A>G upstream_gene_variant 0.26
atpE 1461113 c.69C>T synonymous_variant 0.17
atpE 1461132 p.Val30Ile missense_variant 0.2
atpE 1461149 c.105T>G synonymous_variant 0.17
atpE 1461159 p.Val39Ile missense_variant 0.17
atpE 1461170 c.126A>G synonymous_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.17
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.17
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.17
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.19
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.19
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.14
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.22
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.49
rrs 1472300 n.455C>T non_coding_transcript_exon_variant 0.53
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.27
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.27
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.26
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.28
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.22
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.24
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.22
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.26
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.17
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.2
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.2
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.28
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.39
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.16
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.2
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.25
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.19
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.21
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.22
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.21
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.21
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.29
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.21
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.18
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.42
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.24
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.3
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.29
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.29
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.23
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.26
rrl 1474961 n.1304T>G non_coding_transcript_exon_variant 0.26
rrl 1474963 n.1306G>A non_coding_transcript_exon_variant 0.24
rrl 1474964 n.1307T>C non_coding_transcript_exon_variant 0.24
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.28
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.3
rrl 1475013 n.1356G>A non_coding_transcript_exon_variant 0.3
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.18
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.4
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.52
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.43
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.41
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.2
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.16
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.21
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.19
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.3
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.33
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.29
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.25
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.25
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.2
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.17
fabG1 1673346 c.-94C>G upstream_gene_variant 0.2
fabG1 1673349 c.-91G>C upstream_gene_variant 0.23
fabG1 1673615 p.Glu59Val missense_variant 0.25
fabG1 1673637 p.Asp66Glu missense_variant 0.19
fabG1 1673641 p.Val68Ile missense_variant 0.17
inhA 1673685 c.-517C>T upstream_gene_variant 0.19
fabG1 1673710 p.Leu91Ile missense_variant 0.21
fabG1 1673716 p.Ala93Lys missense_variant 0.21
inhA 1674624 c.423A>C synonymous_variant 0.19
inhA 1674660 c.459G>C synonymous_variant 0.17
inhA 1674672 c.471C>G synonymous_variant 0.17
rpsA 1833554 p.Thr5Ala missense_variant 0.25
rpsA 1833568 c.27G>C synonymous_variant 0.32
rpsA 1833589 c.48A>T synonymous_variant 0.29
rpsA 1833595 c.54T>C synonymous_variant 0.27
rpsA 1833661 c.120A>G synonymous_variant 0.32
rpsA 1833667 c.126C>G synonymous_variant 0.33
rpsA 1833721 c.180A>G synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.19
rpsA 1833742 c.201A>G synonymous_variant 0.29
rpsA 1833745 c.204G>C synonymous_variant 0.29
rpsA 1833748 c.207C>G synonymous_variant 0.27
rpsA 1833787 c.246C>G synonymous_variant 0.21
rpsA 1833790 c.249T>C synonymous_variant 0.24
rpsA 1833802 c.261A>G synonymous_variant 0.29
rpsA 1833811 c.270G>T synonymous_variant 0.23
rpsA 1833838 c.297G>C synonymous_variant 0.26
rpsA 1833841 c.300C>G synonymous_variant 0.27
rpsA 1833847 c.306C>G synonymous_variant 0.29
rpsA 1833856 c.315A>G synonymous_variant 0.26
rpsA 1833874 c.333T>C synonymous_variant 0.24
rpsA 1833886 c.345C>G synonymous_variant 0.28
rpsA 1833928 c.387G>C synonymous_variant 0.29
rpsA 1833940 c.399C>G synonymous_variant 0.27
rpsA 1833971 c.430C>T synonymous_variant 0.2
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1834000 c.459G>C synonymous_variant 0.17
rpsA 1834021 c.480C>T synonymous_variant 0.23
rpsA 1834030 c.489C>G synonymous_variant 0.22
rpsA 1834081 c.540C>T synonymous_variant 0.26
rpsA 1834096 c.555G>C synonymous_variant 0.25
rpsA 1834099 c.558C>G synonymous_variant 0.21
rpsA 1834102 c.561T>C synonymous_variant 0.22
rpsA 1834105 c.564C>G synonymous_variant 0.23
rpsA 1834108 c.567C>G synonymous_variant 0.23
rpsA 1834123 c.582C>G synonymous_variant 0.22
rpsA 1834150 c.609G>C synonymous_variant 0.16
rpsA 1834153 c.612T>C synonymous_variant 0.16
rpsA 1834157 c.616T>C synonymous_variant 0.18
rpsA 1834162 c.621A>G synonymous_variant 0.18
rpsA 1834165 c.624A>G synonymous_variant 0.18
rpsA 1834169 p.Thr210Ala missense_variant 0.18
rpsA 1834189 c.648G>C synonymous_variant 0.18
rpsA 1834195 c.654G>C synonymous_variant 0.19
rpsA 1834210 c.669C>T synonymous_variant 0.17
rpsA 1834222 c.681T>C synonymous_variant 0.16
rpsA 1834306 c.765T>C synonymous_variant 0.16
rpsA 1834435 c.894G>C synonymous_variant 0.16
rpsA 1834513 c.972C>G synonymous_variant 0.17
rpsA 1834528 c.987T>C synonymous_variant 0.17
rpsA 1834546 c.1005T>C synonymous_variant 0.21
rpsA 1834555 c.1014T>G synonymous_variant 0.21
rpsA 1834609 c.1068T>C synonymous_variant 0.2
rpsA 1834618 c.1077G>C synonymous_variant 0.23
rpsA 1834633 c.1092A>G synonymous_variant 0.27
rpsA 1834639 c.1098T>C synonymous_variant 0.23
rpsA 1834654 p.Glu371Asp missense_variant 0.21
rpsA 1834732 c.1191T>C synonymous_variant 0.32
rpsA 1834733 p.Ala398Ser missense_variant 0.32
rpsA 1834738 c.1197A>G synonymous_variant 0.32
rpsA 1834753 c.1212T>C synonymous_variant 0.23
rpsA 1834765 p.Glu408Asp missense_variant 0.17
tlyA 1917940 p.Val1Met missense_variant 0.15
tlyA 1917943 p.Ala2Ser missense_variant 0.15
tlyA 1917951 c.12T>C synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1917975 c.36C>G synonymous_variant 0.21
tlyA 1917981 c.42G>C synonymous_variant 0.21
tlyA 1917990 c.51G>C synonymous_variant 0.2
tlyA 1917993 c.54A>G synonymous_variant 0.2
tlyA 1917996 c.57A>G synonymous_variant 0.2
tlyA 1918002 c.63A>G synonymous_variant 0.19
tlyA 1918206 c.267G>C synonymous_variant 0.19
tlyA 1918212 c.273A>G synonymous_variant 0.17
tlyA 1918218 c.279C>G synonymous_variant 0.16
tlyA 1918221 c.282T>C synonymous_variant 0.16
tlyA 1918236 c.297A>C synonymous_variant 0.17
tlyA 1918248 c.309T>C synonymous_variant 0.18
tlyA 1918251 c.312T>G synonymous_variant 0.19
tlyA 1918258 p.His107Glu missense_variant 0.18
ndh 2101804 c.1239T>G synonymous_variant 0.26
ndh 2101808 p.Thr412Ser missense_variant 0.24
ndh 2101830 p.Ile405Val missense_variant 0.28
ndh 2101837 p.Ala402Val missense_variant 0.24
ndh 2101912 c.1131G>C synonymous_variant 0.17
katG 2155695 c.417C>G synonymous_variant 0.17
katG 2155722 c.390G>C synonymous_variant 0.16
PPE35 2168728 p.Gly629Arg missense_variant 1.0
PPE35 2169085 p.Ser510Thr missense_variant 0.22
PPE35 2170048 p.Leu189Val missense_variant 0.56
PPE35 2170053 p.Thr187Ser missense_variant 0.54
PPE35 2170385 c.228G>T synonymous_variant 0.15
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289930 c.-689A>G upstream_gene_variant 0.18
pncA 2289943 c.-702T>G upstream_gene_variant 0.2
pncA 2289948 c.-707C>T upstream_gene_variant 0.19
pncA 2289949 c.-708A>G upstream_gene_variant 0.2
pncA 2289987 c.-746C>T upstream_gene_variant 0.18
pncA 2289991 c.-750G>C upstream_gene_variant 0.18
pncA 2289994 c.-753A>G upstream_gene_variant 0.18
pncA 2289997 c.-756G>C upstream_gene_variant 0.18
pncA 2290009 c.-768A>G upstream_gene_variant 0.23
pncA 2290015 c.-774A>C upstream_gene_variant 0.23
pncA 2290024 c.-783C>G upstream_gene_variant 0.17
pncA 2290042 c.-801T>C upstream_gene_variant 0.19
kasA 2517950 c.-165C>G upstream_gene_variant 0.34
kasA 2517989 c.-126T>C upstream_gene_variant 0.28
kasA 2517993 c.-122G>T upstream_gene_variant 0.3
kasA 2518019 c.-96A>G upstream_gene_variant 0.23
kasA 2518132 c.18C>T synonymous_variant 0.21
kasA 2518138 c.24T>C synonymous_variant 0.26
kasA 2518146 p.Phe11Tyr missense_variant 0.2
kasA 2518162 c.48G>A synonymous_variant 0.2
kasA 2518174 c.60A>G synonymous_variant 0.22
kasA 2518190 p.Ser26Ala missense_variant 0.22
kasA 2518199 p.Ile29Val missense_variant 0.27
kasA 2518220 c.106C>T synonymous_variant 0.28
kasA 2518234 c.120G>A synonymous_variant 0.27
kasA 2518248 p.Ala45Val missense_variant 0.26
kasA 2518519 c.405G>C synonymous_variant 0.16
kasA 2518528 c.414C>G synonymous_variant 0.2
kasA 2518540 c.426T>C synonymous_variant 0.25
kasA 2518561 c.447T>C synonymous_variant 0.21
kasA 2518567 c.453G>C synonymous_variant 0.22
kasA 2518570 c.456G>C synonymous_variant 0.23
kasA 2518574 p.Ile154Val missense_variant 0.24
kasA 2518579 c.465T>C synonymous_variant 0.23
kasA 2518588 c.474T>C synonymous_variant 0.24
kasA 2518591 c.477G>C synonymous_variant 0.24
kasA 2518609 p.Met165Ile missense_variant 0.35
kasA 2518624 c.510C>G synonymous_variant 0.32
kasA 2518639 c.525G>C synonymous_variant 0.35
kasA 2518657 c.543G>C synonymous_variant 0.25
kasA 2518672 c.558G>C synonymous_variant 0.2
kasA 2518711 c.597A>G synonymous_variant 0.18
kasA 2518714 c.600A>C synonymous_variant 0.18
kasA 2518732 c.618C>G synonymous_variant 0.2
kasA 2518744 c.630C>T synonymous_variant 0.17
kasA 2518747 c.633C>G synonymous_variant 0.17
kasA 2518768 c.654C>T synonymous_variant 0.16
kasA 2518795 c.681C>G synonymous_variant 0.17
kasA 2518825 c.711T>C synonymous_variant 0.19
kasA 2518864 c.750G>C synonymous_variant 0.2
kasA 2518879 c.765A>G synonymous_variant 0.28
kasA 2518885 c.771T>C synonymous_variant 0.25
kasA 2518898 c.784T>C synonymous_variant 0.17
kasA 2518906 c.792A>G synonymous_variant 0.17
kasA 2518910 p.Leu266Met missense_variant 0.17
kasA 2519167 c.1053T>G synonymous_variant 0.21
kasA 2519173 c.1059C>G synonymous_variant 0.24
kasA 2519196 p.Thr361Ser missense_variant 0.23
ahpC 2726493 p.Asn101Glu missense_variant 0.21
ahpC 2726638 p.Ala149Val missense_variant 0.15
ahpC 2726693 c.501C>G synonymous_variant 0.19
ahpC 2726696 c.504C>G synonymous_variant 0.19
folC 2746426 c.1173G>C synonymous_variant 0.24
folC 2746438 c.1161G>C synonymous_variant 0.24
folC 2746451 p.Gly383Ala missense_variant 0.25
folC 2746478 p.Phe374Tyr missense_variant 0.27
folC 2746480 c.1119A>C synonymous_variant 0.27
folC 2746492 c.1107G>A synonymous_variant 0.25
folC 2746495 p.His368Gly missense_variant 0.25
folC 2746507 c.1092A>G synonymous_variant 0.27
folC 2746510 c.1089A>G synonymous_variant 0.29
folC 2746516 c.1083T>G synonymous_variant 0.33
folC 2746519 p.Ser360Ala missense_variant 0.33
folC 2746525 c.1074G>T synonymous_variant 0.32
folC 2746531 c.1068G>C synonymous_variant 0.29
folC 2747314 c.285A>C synonymous_variant 0.19
folC 2747317 c.282C>G synonymous_variant 0.17
folC 2747335 c.264G>C synonymous_variant 0.19
folC 2747355 p.Val82Ile missense_variant 0.16
folC 2747362 c.237G>C synonymous_variant 0.23
Rv2752c 3064832 p.Ala454Thr missense_variant 0.15
Rv2752c 3065055 c.1137T>C synonymous_variant 0.16
Rv2752c 3065064 c.1128G>C synonymous_variant 0.19
Rv2752c 3065073 c.1119C>G synonymous_variant 0.2
Rv2752c 3065079 c.1113T>C synonymous_variant 0.21
Rv2752c 3065082 c.1110G>C synonymous_variant 0.2
Rv2752c 3065087 c.1105A>C synonymous_variant 0.19
Rv2752c 3065088 c.1104A>G synonymous_variant 0.17
Rv2752c 3065109 c.1081_1083delAGAinsCGC synonymous_variant 0.19
Rv2752c 3065115 c.1077C>A synonymous_variant 0.18
Rv2752c 3065146 p.Phe349Tyr missense_variant 0.14
Rv2752c 3065412 c.780G>A synonymous_variant 0.21
Rv2752c 3065418 c.774A>G synonymous_variant 0.22
Rv2752c 3065421 c.771G>A synonymous_variant 0.22
Rv2752c 3065442 c.750T>C synonymous_variant 0.23
Rv2752c 3065451 c.741G>A synonymous_variant 0.28
Rv2752c 3065457 c.735A>C synonymous_variant 0.23
Rv2752c 3065463 c.729T>C synonymous_variant 0.23
Rv2752c 3065481 c.711T>C synonymous_variant 0.29
Rv2752c 3065487 c.705T>G synonymous_variant 0.22
Rv2752c 3065490 c.702A>C synonymous_variant 0.22
Rv2752c 3065493 c.699G>C synonymous_variant 0.21
Rv2752c 3065499 c.693A>C synonymous_variant 0.25
Rv2752c 3065502 p.Asp230Glu missense_variant 0.27
Rv2752c 3065508 c.684T>C synonymous_variant 0.25
Rv2752c 3065511 c.681G>C synonymous_variant 0.24
Rv2752c 3065517 c.675C>G synonymous_variant 0.25
Rv2752c 3065523 c.669C>T synonymous_variant 0.22
Rv2752c 3065553 c.639A>G synonymous_variant 0.17
Rv2752c 3066994 c.-804_-803delCAinsGC upstream_gene_variant 0.2
Rv2752c 3066996 c.-805T>C upstream_gene_variant 0.2
Rv2752c 3067001 c.-810G>A upstream_gene_variant 0.18
Rv2752c 3067017 c.-827_-826delGGinsAC upstream_gene_variant 0.16
Rv2752c 3067020 c.-829G>C upstream_gene_variant 0.16
Rv2752c 3067038 c.-847G>T upstream_gene_variant 0.15
Rv2752c 3067047 c.-856T>C upstream_gene_variant 0.16
Rv2752c 3067052 c.-861G>C upstream_gene_variant 0.16
thyX 3067316 c.630A>G synonymous_variant 0.16
thyX 3067325 c.621A>G synonymous_variant 0.35
thyX 3067349 c.597G>C synonymous_variant 0.25
thyX 3067355 c.591A>C synonymous_variant 0.25
thyX 3067367 c.579G>C synonymous_variant 0.33
thyX 3067373 c.573C>G synonymous_variant 0.19
thyX 3067376 c.570G>A synonymous_variant 0.19
thyX 3067391 c.555G>C synonymous_variant 0.22
thyX 3067394 c.552G>C synonymous_variant 0.22
thyX 3067439 c.507A>G synonymous_variant 0.19
thyX 3067445 c.501C>G synonymous_variant 0.25
thyX 3067457 c.489C>G synonymous_variant 0.21
thyX 3067465 p.Ile161Val missense_variant 0.2
thyX 3067475 c.471A>G synonymous_variant 0.16
thyX 3067490 c.456C>G synonymous_variant 0.29
thyX 3067493 c.453A>G synonymous_variant 0.29
thyX 3067515 p.Ser144Thr missense_variant 0.35
thyX 3067530 p.Ala139Ser missense_variant 0.37
thyX 3067545 p.Glu134Ala missense_variant 0.41
thyX 3067549 p.Thr133Ala missense_variant 0.44
thyX 3067556 p.His130Gln missense_variant 0.4
thyX 3067559 c.387C>G synonymous_variant 0.41
thyX 3067565 p.Asp127Glu missense_variant 0.35
thyX 3067570 p.Ala126Pro missense_variant 0.32
thyX 3067577 c.369G>A synonymous_variant 0.26
thyX 3067583 c.363C>G synonymous_variant 0.31
thyX 3067601 p.Arg115His missense_variant 0.29
thyX 3067611 p.Lys112Thr missense_variant 0.23
thyX 3067619 c.327A>C synonymous_variant 0.23
thyX 3067631 c.315C>G synonymous_variant 0.21
thyX 3067634 c.312C>G synonymous_variant 0.21
thyX 3067652 c.294T>C synonymous_variant 0.21
thyX 3067661 c.285C>G synonymous_variant 0.23
thyX 3067685 c.261A>C synonymous_variant 0.29
thyX 3067691 p.Ile85Leu missense_variant 0.29
thyX 3067694 c.252G>C synonymous_variant 0.3
thyX 3067718 c.228C>G synonymous_variant 0.21
thyX 3067721 c.225T>C synonymous_variant 0.22
thyX 3067727 c.219A>C synonymous_variant 0.21
thyX 3067736 c.210C>T synonymous_variant 0.18
thyX 3067739 c.207T>C synonymous_variant 0.21
thyX 3067761 p.Arg62Lys missense_variant 0.16
thyX 3067765 p.Leu61Ile missense_variant 0.2
thyX 3067772 c.174C>G synonymous_variant 0.2
thyX 3067781 c.165C>A synonymous_variant 0.27
thyX 3067793 c.153T>C synonymous_variant 0.2
thyX 3067799 c.147G>A synonymous_variant 0.21
thyX 3067802 c.144C>G synonymous_variant 0.22
thyX 3067814 c.132T>C synonymous_variant 0.2
thyX 3067850 c.96A>C synonymous_variant 0.22
thyX 3067869 p.Thr26Ser missense_variant 0.19
thyX 3067874 c.72C>G synonymous_variant 0.19
thyA 3073898 p.Ala192Ser missense_variant 0.14
thyA 3073953 c.519T>C synonymous_variant 0.17
thyA 3073977 c.495A>G synonymous_variant 0.2
thyA 3073989 c.483T>C synonymous_variant 0.18
thyA 3074004 c.468T>C synonymous_variant 0.19
thyA 3074010 c.462C>G synonymous_variant 0.18
thyA 3074028 c.444G>C synonymous_variant 0.22
thyA 3074031 c.441T>C synonymous_variant 0.22
thyA 3074034 c.438T>C synonymous_variant 0.22
thyA 3074037 c.435C>G synonymous_variant 0.22
thyA 3074053 p.Arg140Gln missense_variant 0.22
thyA 3074055 p.Glu139Pro missense_variant 0.19
thyA 3074061 c.411A>G synonymous_variant 0.19
thyA 3074097 c.375C>G synonymous_variant 0.18
thyA 3074102 p.Asp124Asn missense_variant 0.17
thyA 3074106 c.366T>C synonymous_variant 0.17
thyA 3074127 c.345G>C synonymous_variant 0.22
thyA 3074130 c.342G>C synonymous_variant 0.23
thyA 3074175 c.297A>G synonymous_variant 0.21
thyA 3074181 c.291A>G synonymous_variant 0.19
thyA 3074187 c.285T>C synonymous_variant 0.2
thyA 3074205 p.Glu89Asp missense_variant 0.2
thyA 3074214 c.258T>C synonymous_variant 0.19
ald 3087272 c.453A>C synonymous_variant 0.2
ald 3087278 p.Gln153His missense_variant 0.2
ald 3087281 c.462G>C synonymous_variant 0.2
ald 3087284 c.465C>G synonymous_variant 0.21
ald 3087290 c.471T>C synonymous_variant 0.21
ald 3087305 c.486G>C synonymous_variant 0.24
ald 3087311 c.492C>G synonymous_variant 0.22
ald 3087318 p.Glu167Lys missense_variant 0.21
ald 3087635 c.816C>T synonymous_variant 0.14
fbiB 3641950 p.Arg139Leu missense_variant 0.14
fbiB 3642701 c.1167C>G synonymous_variant 0.22
fbiB 3642719 c.1185T>C synonymous_variant 0.25
fbiB 3642731 c.1197C>G synonymous_variant 0.25
fbiB 3642743 c.1209T>C synonymous_variant 0.23
fbiB 3642758 c.1224C>G synonymous_variant 0.15
alr 3841001 c.420A>G synonymous_variant 0.16
alr 3841010 c.411A>G synonymous_variant 0.17
alr 3841017 p.Leu135Gln missense_variant 0.17
alr 3841022 c.399C>G synonymous_variant 0.17
alr 3841028 c.393G>C synonymous_variant 0.19
alr 3841033 p.Val130Ile missense_variant 0.18
alr 3841037 c.384G>C synonymous_variant 0.18
alr 3841069 p.Ile118Phe missense_variant 0.18
alr 3841546 c.-126C>A upstream_gene_variant 0.16
rpoA 3877494 p.Glu338Asp missense_variant 0.2
rpoA 3877515 c.993G>C synonymous_variant 0.21
rpoA 3877553 p.Glu319Gln missense_variant 0.32
rpoA 3877571 p.Pro313Ala missense_variant 0.31
rpoA 3877587 c.921A>G synonymous_variant 0.28
rpoA 3877613 p.Ile299Val missense_variant 0.32
rpoA 3877656 c.852T>G synonymous_variant 0.35
rpoA 3877668 c.840A>G synonymous_variant 0.3
rpoA 3877679 p.Ala277Ser missense_variant 0.3
rpoA 3877686 c.822A>G synonymous_variant 0.29
rpoA 3877692 c.816G>C synonymous_variant 0.25
rpoA 3877704 c.804G>C synonymous_variant 0.19
rpoA 3877737 c.771G>C synonymous_variant 0.21
rpoA 3877743 c.765T>C synonymous_variant 0.24
rpoA 3877764 c.744C>G synonymous_variant 0.22
rpoA 3877770 c.738A>G synonymous_variant 0.22
rpoA 3877776 c.732T>C synonymous_variant 0.19
rpoA 3877782 c.726T>C synonymous_variant 0.17
rpoA 3877818 c.690A>G synonymous_variant 0.22
rpoA 3877839 c.669G>C synonymous_variant 0.29
rpoA 3877848 c.660C>T synonymous_variant 0.31
rpoA 3877857 c.651G>A synonymous_variant 0.26
rpoA 3877866 c.642G>C synonymous_variant 0.24
rpoA 3877875 c.633T>G synonymous_variant 0.3
rpoA 3877878 c.630G>C synonymous_variant 0.24
rpoA 3877890 c.618C>T synonymous_variant 0.24
rpoA 3877896 c.612G>C synonymous_variant 0.26
rpoA 3877900 p.Ser203Asn missense_variant 0.23
rpoA 3877905 c.603A>G synonymous_variant 0.21
rpoA 3877909 p.Asn200Ser missense_variant 0.19
rpoA 3877920 c.588G>C synonymous_variant 0.23
rpoA 3877923 c.585C>T synonymous_variant 0.23
rpoA 3877926 c.582G>C synonymous_variant 0.23
rpoA 3877962 c.546G>T synonymous_variant 0.21
rpoA 3878001 c.507A>G synonymous_variant 0.22
rpoA 3878022 c.486T>C synonymous_variant 0.24
rpoA 3878028 c.480G>C synonymous_variant 0.25
rpoA 3878031 c.477T>C synonymous_variant 0.25
rpoA 3878040 c.468T>C synonymous_variant 0.28
rpoA 3878055 c.453A>G synonymous_variant 0.23
rpoA 3878058 c.450G>T synonymous_variant 0.22
rpoA 3878061 c.447G>C synonymous_variant 0.19
rpoA 3878067 c.441C>G synonymous_variant 0.17
rpoA 3878070 c.438T>C synonymous_variant 0.17
rpoA 3878076 c.432C>T synonymous_variant 0.17
rpoA 3878094 c.414C>G synonymous_variant 0.18
rpoA 3878103 c.405A>G synonymous_variant 0.16
rpoA 3878106 c.402G>C synonymous_variant 0.17
rpoA 3878115 c.393G>A synonymous_variant 0.16
rpoA 3878118 c.390T>C synonymous_variant 0.16
rpoA 3878130 c.378C>G synonymous_variant 0.17
rpoA 3878247 c.261G>C synonymous_variant 0.19
rpoA 3878271 c.237T>C synonymous_variant 0.16
rpoA 3878415 c.93C>T synonymous_variant 0.17
rpoA 3878424 c.84G>C synonymous_variant 0.18
rpoA 3878436 c.72A>G synonymous_variant 0.19
rpoA 3878442 c.66G>C synonymous_variant 0.2
rpoA 3878454 c.54A>C synonymous_variant 0.19
rpoA 3878496 c.12A>T synonymous_variant 0.15
rpoA 3878665 c.-158A>G upstream_gene_variant 0.25
rpoA 3878672 c.-165A>T upstream_gene_variant 0.27
rpoA 3878698 c.-191A>G upstream_gene_variant 0.19
clpC1 4038177 p.Pro843Leu missense_variant 0.13
clpC1 4038239 c.2466T>C synonymous_variant 0.17
clpC1 4038255 p.Val817Lys missense_variant 0.19
clpC1 4038272 c.2433T>C synonymous_variant 0.16
clpC1 4038293 c.2412G>C synonymous_variant 0.33
clpC1 4038302 c.2403C>G synonymous_variant 0.21
clpC1 4038308 p.Val799Ile missense_variant 0.19
clpC1 4038314 c.2391T>C synonymous_variant 0.17
clpC1 4038317 c.2388G>C synonymous_variant 0.17
clpC1 4038320 c.2385G>C synonymous_variant 0.21
clpC1 4038356 c.2349T>C synonymous_variant 0.24
clpC1 4038359 c.2346A>G synonymous_variant 0.24
clpC1 4038368 c.2337T>C synonymous_variant 0.21
clpC1 4038388 c.2317T>C synonymous_variant 0.19
clpC1 4038392 c.2313C>T synonymous_variant 0.19
clpC1 4038398 c.2307G>T synonymous_variant 0.15
clpC1 4038407 c.2298G>C synonymous_variant 0.18
clpC1 4038419 c.2286T>C synonymous_variant 0.16
clpC1 4038456 p.Val750Glu missense_variant 0.19
clpC1 4038460 p.Leu749Met missense_variant 0.19
clpC1 4038486 p.Gly740Asn missense_variant 0.21
clpC1 4038489 p.Ala739Gly missense_variant 0.19
clpC1 4038497 p.Ser736Gln missense_variant 0.18
clpC1 4038530 p.Glu725Asp missense_variant 0.28
clpC1 4038596 c.2109A>G synonymous_variant 0.18
clpC1 4038683 c.2022T>C synonymous_variant 0.24
clpC1 4038695 c.2010C>G synonymous_variant 0.28
clpC1 4038701 c.2004G>C synonymous_variant 0.27
clpC1 4038704 c.2001T>C synonymous_variant 0.26
clpC1 4038707 c.1998C>G synonymous_variant 0.28
clpC1 4038710 c.1995G>C synonymous_variant 0.3
clpC1 4038713 c.1992T>C synonymous_variant 0.32
clpC1 4038749 c.1956C>G synonymous_variant 0.39
clpC1 4038755 c.1950G>T synonymous_variant 0.37
clpC1 4038770 c.1935C>T synonymous_variant 0.39
clpC1 4038773 c.1932T>C synonymous_variant 0.37
clpC1 4038782 c.1923G>C synonymous_variant 0.39
clpC1 4038812 c.1893T>C synonymous_variant 0.23
clpC1 4038821 c.1884G>A synonymous_variant 0.23
clpC1 4038845 c.1860G>C synonymous_variant 0.25
clpC1 4038860 c.1845G>C synonymous_variant 0.26
clpC1 4038878 c.1827A>G synonymous_variant 0.26
clpC1 4038908 c.1797C>G synonymous_variant 0.22
clpC1 4038914 c.1791G>C synonymous_variant 0.26
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.27
clpC1 4038953 c.1752A>G synonymous_variant 0.28
clpC1 4038956 c.1749T>C synonymous_variant 0.28
clpC1 4038965 c.1740T>C synonymous_variant 0.3
clpC1 4038971 c.1734T>C synonymous_variant 0.28
clpC1 4038974 c.1731T>C synonymous_variant 0.31
clpC1 4038989 c.1716T>C synonymous_variant 0.34
clpC1 4038997 c.1708T>C synonymous_variant 0.31
clpC1 4039004 c.1701C>G synonymous_variant 0.32
clpC1 4039022 c.1683A>G synonymous_variant 0.34
clpC1 4039064 c.1641C>T synonymous_variant 0.39
clpC1 4039097 c.1608G>C synonymous_variant 0.4
clpC1 4039103 c.1602T>C synonymous_variant 0.36
clpC1 4039106 c.1599G>C synonymous_variant 0.37
clpC1 4039112 c.1593C>G synonymous_variant 0.38
clpC1 4039121 c.1584T>C synonymous_variant 0.37
clpC1 4039142 c.1563A>G synonymous_variant 0.39
clpC1 4039145 c.1560G>C synonymous_variant 0.39
clpC1 4039169 p.Glu512Asp missense_variant 0.25
clpC1 4039172 c.1533A>G synonymous_variant 0.26
clpC1 4039178 c.1527G>C synonymous_variant 0.21
clpC1 4039183 c.1522T>C synonymous_variant 0.21
clpC1 4039186 c.1519C>T synonymous_variant 0.2
clpC1 4039226 c.1479T>C synonymous_variant 0.22
clpC1 4039229 c.1476C>G synonymous_variant 0.19
clpC1 4039274 c.1431G>C synonymous_variant 0.3
clpC1 4039286 c.1419T>C synonymous_variant 0.34
clpC1 4039295 c.1410A>C synonymous_variant 0.39
clpC1 4039298 c.1407T>C synonymous_variant 0.34
clpC1 4039319 c.1386T>C synonymous_variant 0.33
clpC1 4039322 c.1383T>C synonymous_variant 0.33
clpC1 4039328 c.1377A>C synonymous_variant 0.29
clpC1 4039331 c.1374C>G synonymous_variant 0.29
clpC1 4039337 p.Thr456Gln missense_variant 0.29
clpC1 4039349 c.1356C>T synonymous_variant 0.3
clpC1 4039352 c.1353C>G synonymous_variant 0.32
clpC1 4039364 c.1341C>G synonymous_variant 0.28
clpC1 4039391 c.1314T>G synonymous_variant 0.19
clpC1 4039397 c.1308A>G synonymous_variant 0.19
clpC1 4039409 c.1296T>C synonymous_variant 0.22
clpC1 4039412 c.1293T>G synonymous_variant 0.22
clpC1 4039415 p.Glu430Asp missense_variant 0.22
clpC1 4039430 c.1275T>C synonymous_variant 0.21
clpC1 4039442 c.1263A>G synonymous_variant 0.17
clpC1 4039469 c.1236T>C synonymous_variant 0.18
clpC1 4039480 c.1225C>A synonymous_variant 0.24
clpC1 4039481 c.1224T>G synonymous_variant 0.24
clpC1 4039517 c.1188C>G synonymous_variant 0.3
clpC1 4039556 c.1149G>C synonymous_variant 0.2
clpC1 4039559 c.1146C>G synonymous_variant 0.2
clpC1 4039562 c.1143C>G synonymous_variant 0.21
clpC1 4039565 c.1140G>C synonymous_variant 0.21
clpC1 4039570 p.Met379Leu missense_variant 0.21
clpC1 4039576 p.Ala377Pro missense_variant 0.21
clpC1 4039577 c.1128T>C synonymous_variant 0.21
clpC1 4039589 c.1116G>C synonymous_variant 0.2
clpC1 4039661 c.1044T>G synonymous_variant 0.26
clpC1 4039664 c.1041G>C synonymous_variant 0.24
clpC1 4039694 c.1011G>C synonymous_variant 0.26
clpC1 4039790 c.915C>G synonymous_variant 0.17
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.17
clpC1 4039937 c.768G>C synonymous_variant 0.18
clpC1 4039946 c.759A>C synonymous_variant 0.2
clpC1 4039952 c.753T>C synonymous_variant 0.21
clpC1 4039979 c.726C>G synonymous_variant 0.23
clpC1 4039988 c.717C>G synonymous_variant 0.29
clpC1 4039991 c.714G>C synonymous_variant 0.3
clpC1 4040021 c.684A>C synonymous_variant 0.26
clpC1 4040024 c.681A>G synonymous_variant 0.27
clpC1 4040033 c.672G>C synonymous_variant 0.27
clpC1 4040036 c.669C>G synonymous_variant 0.26
clpC1 4040090 p.Ser205Thr missense_variant 0.15
clpC1 4040093 c.612C>G synonymous_variant 0.16
clpC1 4040105 c.600C>G synonymous_variant 0.2
clpC1 4040147 c.558A>G synonymous_variant 0.23
clpC1 4040162 c.543G>C synonymous_variant 0.19
clpC1 4040165 c.540G>C synonymous_variant 0.18
clpC1 4040171 c.534C>G synonymous_variant 0.24
clpC1 4040273 c.432T>C synonymous_variant 0.16
clpC1 4040278 p.Ser143Thr missense_variant 0.15
clpC1 4040291 c.414G>C synonymous_variant 0.3
clpC1 4040318 c.387C>G synonymous_variant 0.33
clpC1 4040330 c.375C>G synonymous_variant 0.31
clpC1 4040342 c.363C>G synonymous_variant 0.21
clpC1 4040546 c.159G>C synonymous_variant 0.15
panD 4044072 c.210C>G synonymous_variant 0.18
panD 4044075 c.207T>C synonymous_variant 0.18
panD 4044165 c.117G>C synonymous_variant 0.17
embC 4240267 c.405T>C synonymous_variant 0.17
embC 4240270 c.408T>C synonymous_variant 0.17
embC 4240277 p.Leu139Val missense_variant 0.19
embC 4240282 c.420C>G synonymous_variant 0.2
embC 4240284 p.Thr141Ser missense_variant 0.2
embC 4240288 c.426C>G synonymous_variant 0.21
embC 4240297 c.435T>C synonymous_variant 0.27
embC 4240313 p.Thr151Ala missense_variant 0.27
embC 4240318 c.456T>C synonymous_variant 0.3
embC 4240654 c.792C>G synonymous_variant 0.16
embC 4240660 c.798C>G synonymous_variant 0.16
embC 4240669 c.807G>C synonymous_variant 0.18
embC 4240671 p.Thr270Ile missense_variant 0.18
embC 4240677 p.Gly272Ala missense_variant 0.17
embC 4240685 p.Thr275Ala missense_variant 0.17
embC 4240693 c.831T>G synonymous_variant 0.15
embC 4240726 c.864G>C synonymous_variant 0.18
embC 4241002 c.1140G>C synonymous_variant 0.23
embC 4241013 p.Met384Thr missense_variant 0.25
embC 4241017 c.1155T>C synonymous_variant 0.21
embC 4241023 c.1161T>G synonymous_variant 0.21
embC 4241032 c.1170G>C synonymous_variant 0.24
embC 4241038 c.1176G>C synonymous_variant 0.23
embC 4241047 c.1185C>G synonymous_variant 0.22
embC 4241050 c.1188T>G synonymous_variant 0.23
embC 4241053 c.1191G>C synonymous_variant 0.21
embC 4241089 c.1227C>G synonymous_variant 0.22
embC 4241095 c.1233C>T synonymous_variant 0.22
embC 4241107 c.1245G>C synonymous_variant 0.27
embC 4241140 c.1278A>G synonymous_variant 0.19
embC 4241146 c.1284C>G synonymous_variant 0.21
embC 4241158 c.1296T>C synonymous_variant 0.21
embC 4241230 c.1368A>G synonymous_variant 0.17
embC 4241233 c.1371G>C synonymous_variant 0.17
embC 4241488 c.1626G>C synonymous_variant 0.17
embC 4241496 p.Ala545Gly missense_variant 0.18
embC 4241500 c.1638A>C synonymous_variant 0.18
embC 4241501 p.Ser547Thr missense_variant 0.19
embC 4241506 c.1644G>C synonymous_variant 0.2
embC 4241518 c.1656A>G synonymous_variant 0.17
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242820 c.-413G>C upstream_gene_variant 0.23
embA 4242823 c.-410G>C upstream_gene_variant 0.23
embA 4242841 c.-392C>T upstream_gene_variant 0.15
embA 4242847 c.-386C>A upstream_gene_variant 0.15
embA 4242859 c.-374C>T upstream_gene_variant 0.16
embC 4242863 p.Tyr1001Asn missense_variant 0.2
embA 4242883 c.-350C>G upstream_gene_variant 0.23
embA 4242892 c.-341G>C upstream_gene_variant 0.24
embA 4242901 c.-332G>C upstream_gene_variant 0.19
embA 4244207 c.975C>G synonymous_variant 0.27
embA 4244219 c.987C>G synonymous_variant 0.15
embA 4244534 c.1302T>C synonymous_variant 0.18
embA 4244537 c.1305T>G synonymous_variant 0.18
embA 4244543 c.1311C>G synonymous_variant 0.18
embA 4244547 p.Ile439Val missense_variant 0.17
embA 4244619 c.1387T>C synonymous_variant 0.16
embA 4244631 p.Thr467Leu missense_variant 0.17
embA 4244880 p.Trp550Arg missense_variant 0.2
embA 4245101 c.1869G>C synonymous_variant 0.17
embA 4245137 c.1905T>C synonymous_variant 0.24
embA 4245146 c.1914G>A synonymous_variant 0.25
embA 4245149 c.1917C>G synonymous_variant 0.26
embA 4245153 p.Ile641Val missense_variant 0.22
embA 4245182 c.1950T>C synonymous_variant 0.18
embA 4245189 c.1957C>T synonymous_variant 0.22
embA 4245198 p.Leu656Ile missense_variant 0.24
embA 4245207 c.1975T>C synonymous_variant 0.23
embA 4245215 c.1983A>C synonymous_variant 0.27
embA 4245222 p.Tyr664Gln missense_variant 0.24
embA 4245248 c.2016G>C synonymous_variant 0.18
embA 4245257 c.2025A>G synonymous_variant 0.21
embA 4245263 c.2031A>G synonymous_variant 0.21
embA 4245282 p.Ile684Val missense_variant 0.19
embA 4245285 c.2053T>C synonymous_variant 0.19
embA 4245290 c.2058C>G synonymous_variant 0.16
embA 4245299 c.2067A>G synonymous_variant 0.19
embA 4245315 p.Val695Met missense_variant 0.19
embB 4245737 c.-777A>C upstream_gene_variant 0.18
embB 4245740 c.-774T>C upstream_gene_variant 0.16
embB 4245764 c.-750G>C upstream_gene_variant 0.17
embA 4245772 p.Asn847Thr missense_variant 0.17
embB 4245785 c.-729G>C upstream_gene_variant 0.17
embB 4245807 c.-707_-705delTTAinsCTG upstream_gene_variant 0.2
embB 4245812 c.-702G>C upstream_gene_variant 0.23
embA 4245813 p.Pro861Ala missense_variant 0.23
embA 4245820 p.Ser863Thr missense_variant 0.21
embB 4245824 c.-690G>C upstream_gene_variant 0.24
embB 4245833 c.-681G>C upstream_gene_variant 0.29
embB 4245842 c.-672G>C upstream_gene_variant 0.29
embB 4245845 c.-669T>C upstream_gene_variant 0.29
embB 4245851 c.-663G>C upstream_gene_variant 0.29
embB 4245860 c.-654C>G upstream_gene_variant 0.26
embB 4246544 p.Thr11Pro missense_variant 0.29
embB 4246548 p.Pro12Gln missense_variant 0.86
embB 4246555 c.42G>C synonymous_variant 0.86
embB 4246556 p.Ala15Pro missense_variant 0.86
embB 4246563 p.Leu17Trp missense_variant 0.5
embB 4246567 c.54G>T synonymous_variant 0.5
embB 4247434 c.921C>G synonymous_variant 0.17
embB 4247437 c.924A>G synonymous_variant 0.17
embB 4247440 c.927C>G synonymous_variant 0.17
embB 4247446 c.933C>T synonymous_variant 0.16
embB 4247491 c.978G>C synonymous_variant 0.21
embB 4247497 c.984T>C synonymous_variant 0.22
embB 4247512 c.999T>C synonymous_variant 0.19
embB 4247539 c.1026T>C synonymous_variant 0.21
embB 4247554 c.1041T>C synonymous_variant 0.21
embB 4247566 c.1053C>A synonymous_variant 0.14
embB 4247629 c.1116C>G synonymous_variant 0.2
embB 4247632 c.1119C>G synonymous_variant 0.21
embB 4247866 c.1353G>C synonymous_variant 0.22
embB 4247875 c.1362G>C synonymous_variant 0.29
embB 4247876 c.1363C>T synonymous_variant 0.27
embB 4247881 c.1368G>C synonymous_variant 0.27
embB 4247887 c.1374C>T synonymous_variant 0.28
embB 4247893 c.1380C>T synonymous_variant 0.28
embB 4247899 p.Met462Ile missense_variant 0.3
embB 4247905 c.1392G>C synonymous_variant 0.32
embB 4247909 c.1396T>C synonymous_variant 0.35
embB 4247932 c.1419C>G synonymous_variant 0.27
embB 4247940 p.Leu476Trp missense_variant 0.38
embB 4247945 c.1432T>C synonymous_variant 0.38
embB 4247951 p.Ser480Ala missense_variant 0.38
embB 4247956 c.1443G>C synonymous_variant 0.44
embB 4247974 c.1461C>G synonymous_variant 0.42
embB 4248035 p.Val508Ile missense_variant 0.26
embB 4248040 c.1527C>G synonymous_variant 0.26
embB 4248041 p.Ala510Thr missense_variant 0.26
embB 4248044 p.Lys511Ala missense_variant 0.26
embB 4248070 c.1557T>C synonymous_variant 0.26
embB 4248085 c.1572T>C synonymous_variant 0.29
embB 4248097 c.1584C>G synonymous_variant 0.3
embB 4248130 c.1617G>C synonymous_variant 0.28
embB 4248133 c.1620C>G synonymous_variant 0.28
embB 4248139 c.1626C>G synonymous_variant 0.28
embB 4248142 c.1629T>C synonymous_variant 0.28
embB 4248143 c.1630T>C synonymous_variant 0.28
embB 4248157 c.1644A>G synonymous_variant 0.22
embB 4248220 c.1707A>C synonymous_variant 0.16
embB 4248319 c.1806A>G synonymous_variant 0.19
embB 4248343 c.1830G>C synonymous_variant 0.19
embB 4248355 c.1842A>G synonymous_variant 0.18
embB 4248358 c.1845C>G synonymous_variant 0.18
embB 4248361 c.1848A>C synonymous_variant 0.17
embB 4248362 p.Ser617Ala missense_variant 0.17
embB 4248373 c.1860C>G synonymous_variant 0.17
aftB 4267256 c.1581C>G synonymous_variant 0.19
aftB 4267262 c.1575T>C synonymous_variant 0.2
aftB 4267266 p.Ala524Gly missense_variant 0.19
aftB 4267268 c.1569T>C synonymous_variant 0.19
ubiA 4269077 p.Ile253Val missense_variant 0.14
aftB 4269084 c.-248G>C upstream_gene_variant 0.16
aftB 4269123 c.-287T>G upstream_gene_variant 0.17
aftB 4269131 c.-295C>T upstream_gene_variant 0.15
aftB 4269132 c.-296G>C upstream_gene_variant 0.15
aftB 4269138 c.-302C>T upstream_gene_variant 0.14
aftB 4269179 c.-343C>A upstream_gene_variant 0.17
aftB 4269183 c.-347T>C upstream_gene_variant 0.16
aftB 4269186 c.-350C>G upstream_gene_variant 0.17
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0