Rv0676c - c.1803G>C

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
1 Sensitive 1 RR-TB 37 HR-TB 15 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 27 Other
lineage Counts
lineage Count
lineage2.1;lineage4.9 8
La3;M.canetti;lineage4.8;lineage4.9 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.2.1 2
La3;M.canetti;lineage2.1;lineage4.9 11
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.9 12
M.canetti;lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.9 9
lineage2.1 1
La1;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage2.2.1 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage4.3.2 1
lineage4.8 1
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1 1
2
lineage4.9;lineage6.3 2
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage4.9 2
La3;M.canetti;lineage2.1;lineage3.1 1
lineage1;lineage4.9 1
M.canetti;lineage2.2 1
lineage4.1.1.1 2
lineage4.3.4.2.1 1
lineage3 1
lineage3.1.1 1
lineage3.1 1
spoligotype Counts
spoligotype Count
None 83
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6045242 Other lineage2.1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR133825 HR-TB La1;lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR1162864 Other lineage4.1.2.1 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1169194 Other lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR772255 MDR-TB lineage4.3.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2229542 Other lineage4.8 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR212125 HR-TB lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1184381 MDR-TB None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR4820773 HR-TB lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR176793 Other lineage4.1.1.1 None
ERR181887 Other lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR4816999 Other None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4821053 Other lineage3 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR1196474 Other lineage3.1.1 None
SRR1196546 Other lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR4816585 Other lineage2.2.1 None
SRR6325447 HR-TB lineage4.1.1.1 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None